mRNA_E_fasciculatus_S2_contig7020.15182.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7020.15182.1
Unique NamemRNA_E_fasciculatus_S2_contig7020.15182.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7020.15182.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2K9_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 8.270e-107
Identity = 217/280 (77.50%), Postives = 220/280 (78.57%), Query Frame = 1 
Query:    1 MGRVRKYKKVKAMDPFAKGGGGGRMGMGRKGGSDVDRNLPPDVKNHQAQRLNNLEGDGKSKKNKNKRRLPQWAHEELKETAKRVREEHADPEGKGRHPEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSATNKRRKKYLDDKKRKNKLKKQGLWEEVQRRERLDEEHAAAGFDGAERSGXXXXXXXXXXVSAXXXXXXXXXXXXXXXVGGNN--WGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAA 834
            MGRVRKYKKVKAMDPFAKGG GGRMGMGRKGGSD+DRNLPPDVKNHQAQRLNNLE +GK KK KNKRRLPQWAHEELKETAKRVREEHADP GKGR PEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHS+TNK                   LW                         XXXXXXXXXX   XXXXXXXXXXXXXXX       WGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAA
Sbjct:    1 MGRVRKYKKVKAMDPFAKGGCGGRMGMGRKGGSDLDRNLPPDVKNHQAQRLNNLE-EGKDKKKKNKRRLPQWAHEELKETAKRVREEHADPGGKGRQPEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKXXXXXXXXXXXXXXXXXXXLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAA 279
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BLAST of mRNA_E_fasciculatus_S2_contig7020.15182.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.480e-26
Identity = 103/282 (36.52%), Postives = 136/282 (48.23%), Query Frame = 1 
Query:    1 MGRVRKYKKVKAMDPFAKGGGGGRMGMGRKGGSDVDRNLPPDVKNHQAQRLNNLEGDGKSKKNKNKRRLPQWAHEELKETAKRVREEHADPE---GKGRHPEP-----QRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSATNKRRKKYLDDKKRKNKLKKQGLWEEVQRRERLDEEHAAAGFDGAERSGXXXXXXXXXXVSAXXXXXXXXXXXXXXXVGGNNWGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWAR 822
            MGRVR+YKK K +D  +K     R    +K   DV+ NLPPD  NHQAQRL   + DG  K+ + K+RLP+WA EEL+ETAKR RE  AD +   G    P P      +  +  KR DES+R+FN+RVR+  A+ LKD  K  S+T  RRKK+L +K +K KL++QGLWEE + +   +E+  A   D                                                        + E I+FGE  H PP    +PK +G K     KPW R
Sbjct:    1 MGRVRRYKKAKNLDITSK-----RKRADKK---DVEHNLPPDTANHQAQRL---KADGTLKR-RAKQRLPEWAKEELRETAKRERE--ADKQLLAGAAATPLPGENDTPKVKITPKRTDESLREFNERVRKVAAEALKDNAKRASSTVARRKKHLAEKSQKKKLQRQGLWEEHKMQVAREEQGIAEERD------------------------------------------------------FSKPEHIQFGETVHEPPRFQSMPKLKGLKPDLAEKPWLR 214
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7020.15182.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.270e-10777.50protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2K9... [more]
Uncharacterized3.480e-2636.52protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7020contigE_fasciculatus_S2_contig7020:1090..4488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1131
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002610.1
Cds size1131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842362.3010507-CDS-E_fasciculatus_S2_contig7020:1089..14921696842362.3010507-CDS-E_fasciculatus_S2_contig7020:1089..1492Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 1090..1492 -
1696842362.3127193-CDS-E_fasciculatus_S2_contig7020:2074..23681696842362.3127193-CDS-E_fasciculatus_S2_contig7020:2074..2368Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 2075..2368 -
1696842362.3244853-CDS-E_fasciculatus_S2_contig7020:2997..31281696842362.3244853-CDS-E_fasciculatus_S2_contig7020:2997..3128Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 2998..3128 -
1696842362.33822-CDS-E_fasciculatus_S2_contig7020:3650..37841696842362.33822-CDS-E_fasciculatus_S2_contig7020:3650..3784Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 3651..3784 -
1696842362.3504765-CDS-E_fasciculatus_S2_contig7020:4319..44881696842362.3504765-CDS-E_fasciculatus_S2_contig7020:4319..4488Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7020 4320..4488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7020.15182.1prot_E_fasciculatus_S2_contig7020.15182.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7020 1090..4488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7020.15182.1

>prot_E_fasciculatus_S2_contig7020.15182.1 ID=prot_E_fasciculatus_S2_contig7020.15182.1|Name=mRNA_E_fasciculatus_S2_contig7020.15182.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=377bp
MGRVRKYKKVKAMDPFAKGGGGGRMGMGRKGGSDVDRNLPPDVKNHQAQR
LNNLEGDGKSKKNKNKRRLPQWAHEELKETAKRVREEHADPEGKGRHPEP
QRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSATNKRRKKYLDDK
KRKNKLKKQGLWEEVQRRERLDEEHAAAGFDGAERSGGGRGGAGGGGVSA
GRGRQGGGGGSGDGGVGGNNWGVLGRADDDEGAAQLLQKERIRFGEVAHA
PPDLAKIPKPRGFKDQGQAKPWARQAAAAAAGGGMGNVSSPSGDSGGNKG
ESQGQQKKGKRNRKNNAAAGGGGDGQQRQEQRALEAEAKKAQNRQMEEMR
QRVQEAYSGLKKKRRAGQTQFVGSDL*
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mRNA from alignment at E_fasciculatus_S2_contig7020:1090..4488-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7020.15182.1 ID=mRNA_E_fasciculatus_S2_contig7020.15182.1|Name=mRNA_E_fasciculatus_S2_contig7020.15182.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7020:1090..4488- (Ectocarpus fasciculatus EfasUO2)
ATGGGTCGAGTGAGGAAGTACAAGAAGGTGAAGGCGATGGATCCCTTCGC
CAAGGGGGGTGGTGGCGGCAGGATGGGGATGGGGCGCAAGGGAGGCAGCG
ACGTGGACAGAAACCTGCCTCCGGACGTCAAGAACCACCAGGCGCAGCGG
CTCAACAACCTTGAAGGAGGTGTGTGGCGTGTGGGGGTGTTTGCATGCAA
TCAACAGCAGTGCGGTCGTGTGTGAGAGTTTGAGATGGGCTGTAGAGGAT
CGGCCGGGGGTGGTGATTTTCGATTATCATGGATGTTGGTGTCCTACAAC
AACTGCCTGTTGACTGGCTCGTACAACTGCTGTGGGAAGGTGTACTCTGC
AACGAGTACTCCATCTGGATTCCCGAGAGCTGCGTGCGTGTACGTCGGGA
GGGAGGATGGATCAAAGCAGAGGCAGCGAACGAAGCAACAGCAATTCCCA
CATAGGTGGCGTGCCATCCCCTTGCTGTGCCTGCTGCATGGTAGACGAAA
GGCCAAGGAGCAGATGCAGATATTCAATCAGAGAAGGACAAGGTGATTTA
TCGACACATCTTCCGCAGGAACTCTCCTGTTGTATCCTATTTAGCATACC
CCACCACCGAGTGTTGACTGGTCGATGGCCTTCTCACATCGAGACATGTT
GATCACCCCTGCGCTGCTCGTGGGAACGACCCTGATCTTCTGGCCGCCGA
GCAGACGGCAAGAGCAAGAAGAACAAGAACAAGCGCAGGCTGCCCCAGTG
GGCGCACGAGGAGCTCAAGGAGACCGCCAAGAGGGTCCGCGAAGAGCACG
CCGACCCGGAGGGAAAGGGGCGCCATCCCGAGCCTCAGGTGGGTAGCGTC
TTGTCAATGACTCTACCGTTGGGCCTGTCTGTGTCATAAACATGCTCTGA
GTTGTTAGTCCATGCTTGTGCCTTTTGGTGCGTGAAAGGCAGGCACCGCA
GGAGGAAAGCTGGAGAATTCCTCCTGGCCGGTTTTTTCAAACGCATGTAC
AGCAGTAGTTCGAGAGATGTAGACCGACGTCCAGAATATATGAGACGACT
CGGGAACGAGAAAAAAGGGGAAAAACTTGCCCTCAACGTTTACTTGTACA
CGAGAACCGGCTCTACCGTTTCCCTCTCTCTGGCCCATGAGTTGGACCTT
CCCCGCCACGGCTTGGTAGGGATACCGAGCACCTGTGAACCGGAGACTGC
GGTGGTCGTGCATTCCGCTACCCTGAGCAGCAGCCCACTACCCCACACTC
CCCTCGCCCGGTAGCCGCCCCTCCCAGATATAGAAAATGACGGGTTTCCC
TGCTCTTACAACCCTCGCCTCCGTCTCCACCCAACCCCTGTGTCATTTTG
ATCGCTGCAGAGGGCGGCGATGGAGGGGAAGCGCGAGGACGAGAGCATGC
GACAATTCAACAAGCGTGTTCGAGAGGGCACGGCCCAGCTACTCAAGGAC
GAGTTCAAGGAGCACAGCGCCACCAACAAGCGGAGGAAAAAGTGAGACAC
TCGATTGACTTGAGAATAGTGTGCGTAGATGGCGGCCGTTATGCATGATG
CTGACTCCTTGGCAGTTCCCCCAAAGGGGGTTCCGTTGTCTTTTTCGGCG
GGCTCTGCGGGTTCAAATATTCTGGCTGGACATCGCTAACGGGGTCGATT
GAATTCTACTGTACATTTAGGTAGATTCCTGGTGCTGTGGAACGGTTCCA
GATTGGCCTTTTTGTTTGTCGCTTTGCGGGAAACGGTCGTAGTGTAGGAG
GCGATGTACCTACGCAAGGGAGGGTTGGCTCGGGGTGTCTGCCCGGGTGA
TCAAGAAATGGTAGCGCTCTAGCATGACGGGTATCACCCTGTGAATACCG
TGTTTTTCCATGGATGCTCTCCAAATCCACCCGTCTCGGCAGTTCTCGTC
ACGAAATGCATGGGAAGGTGGTCTTGTATCACTGCTCGGTAGTTTTTTTT
GGTACATACTGCGCCGCAAGTCATTCTCTGTCCCTTTGCATGTCTCGTTC
TTTCTCTGTTCACCCCATCTCCCCTCTGCACAACTTGCCTCTCATGTGCA
CAAAATCGTCACAACTCCTCCTCCCTCTCATGACCAAAAACCACCTGTCC
CGATCGGTCCGTCTATGCAGGTATCTCGATGACAAGAAGCGCAAGAACAA
GCTCAAGAAGCAGGGTCTCTGGGAAGAGGTGCAGCGGCGCGAGCGTCTCG
ACGAAGAGCACGCGGCAGCAGGTTTTGATGGGGCGGAGCGAAGCGGCGGC
GGCCGCGGCGGCGCTGGTGGCGGCGGTGTTTCAGCTGGTCGTGGCAGGCA
GGGGGGTGGCGGCGGCAGTGGCGATGGTGGTGTCGGCGGAAACAACTGGG
GGGTGTTGGGGCGGGCGGACGATGACGAAGGCGCGGCGCAGCTTCTCCAG
AAGGAGCGCATCAGGTGCGGTTTATCCTTGACCGGCATAGCGCACCGCCT
GTGTTCGTTCTTCTACATCACCAACCCACTCCCTTCCCCCCCAGGATGAA
AGTATGGCGGTCACAATAGGCCTTGGAAGTGTTGAGCCTACAGTACCTCA
AAGTCGCTGGCGGTGTCTTGTCAATGTTTTTCGTGACACACGTTGAGTTT
GATATTGAGATCTCTTCGTGAGTTGTCGTGCTGCCAAAAGTTGGTCCCAT
GCGTAGAGGGCTGTGCTTTCGTACAACGATGATGCCAGTCTTCTCGAAGG
GTCGCAGACCCTTGGTGCCGCTACTGCACTGCCCCCGCCACATCGGCCAG
AACCTATTCCATGCGTCCGTTCCTCGGAAACTCTTGGTTTTGCTATTGAC
GAAAATTTTGACTGGCTCGATTGCATCGCACATGCTCGCAGCTCACCTCC
ACAGACTGGTGGAAGCTTTCGCATATATATACTCACAAATGCACGCGCAG
GCAATTTCGATCCTGCTCGCTCGCTCGCTGCTCATCGTCTTGGCACGAAC
TCAGCTACGACACCTACACCCCATCTTTTCGGCTTCGTCTTTTTAGGTTT
GGAGAAGTGGCGCACGCGCCCCCAGACCTCGCCAAGATTCCCAAGCCGCG
GGGCTTCAAGGACCAGGGGCAGGCCAAGCCGTGGGCAAGGCAAGCCGCCG
CAGCCGCAGCCGGGGGGGGGATGGGGAATGTTTCGTCTCCCAGTGGTGAC
AGTGGGGGAAATAAGGGCGAGAGCCAGGGGCAGCAGAAGAAGGGAAAGAG
AAATAGGAAAAACAACGCGGCGGCCGGGGGGGGGGGAGATGGGCAGCAGA
GGCAAGAGCAGAGGGCATTGGAGGCGGAAGCGAAGAAGGCCCAGAATCGC
CAGATGGAGGAGATGAGGCAGAGAGTCCAGGAGGCGTACAGCGGGCTGAA
GAAGAAGAGGCGTGCGGGGCAGACGCAGTTCGTCGGCAGCGACCTTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7020:1090..4488-

>mRNA_E_fasciculatus_S2_contig7020.15182.1 ID=mRNA_E_fasciculatus_S2_contig7020.15182.1|Name=mRNA_E_fasciculatus_S2_contig7020.15182.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1131bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7020:1090..4488- (Ectocarpus fasciculatus EfasUO2)
ATGGGTCGAGTGAGGAAGTACAAGAAGGTGAAGGCGATGGATCCCTTCGC
CAAGGGGGGTGGTGGCGGCAGGATGGGGATGGGGCGCAAGGGAGGCAGCG
ACGTGGACAGAAACCTGCCTCCGGACGTCAAGAACCACCAGGCGCAGCGG
CTCAACAACCTTGAAGGAGACGGCAAGAGCAAGAAGAACAAGAACAAGCG
CAGGCTGCCCCAGTGGGCGCACGAGGAGCTCAAGGAGACCGCCAAGAGGG
TCCGCGAAGAGCACGCCGACCCGGAGGGAAAGGGGCGCCATCCCGAGCCT
CAGAGGGCGGCGATGGAGGGGAAGCGCGAGGACGAGAGCATGCGACAATT
CAACAAGCGTGTTCGAGAGGGCACGGCCCAGCTACTCAAGGACGAGTTCA
AGGAGCACAGCGCCACCAACAAGCGGAGGAAAAAGTATCTCGATGACAAG
AAGCGCAAGAACAAGCTCAAGAAGCAGGGTCTCTGGGAAGAGGTGCAGCG
GCGCGAGCGTCTCGACGAAGAGCACGCGGCAGCAGGTTTTGATGGGGCGG
AGCGAAGCGGCGGCGGCCGCGGCGGCGCTGGTGGCGGCGGTGTTTCAGCT
GGTCGTGGCAGGCAGGGGGGTGGCGGCGGCAGTGGCGATGGTGGTGTCGG
CGGAAACAACTGGGGGGTGTTGGGGCGGGCGGACGATGACGAAGGCGCGG
CGCAGCTTCTCCAGAAGGAGCGCATCAGGTTTGGAGAAGTGGCGCACGCG
CCCCCAGACCTCGCCAAGATTCCCAAGCCGCGGGGCTTCAAGGACCAGGG
GCAGGCCAAGCCGTGGGCAAGGCAAGCCGCCGCAGCCGCAGCCGGGGGGG
GGATGGGGAATGTTTCGTCTCCCAGTGGTGACAGTGGGGGAAATAAGGGC
GAGAGCCAGGGGCAGCAGAAGAAGGGAAAGAGAAATAGGAAAAACAACGC
GGCGGCCGGGGGGGGGGGAGATGGGCAGCAGAGGCAAGAGCAGAGGGCAT
TGGAGGCGGAAGCGAAGAAGGCCCAGAATCGCCAGATGGAGGAGATGAGG
CAGAGAGTCCAGGAGGCGTACAGCGGGCTGAAGAAGAAGAGGCGTGCGGG
GCAGACGCAGTTCGTCGGCAGCGACCTTTGA
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