mRNA_E_fasciculatus_S2_contig7017.15176.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7017.15176.1
Unique NamemRNA_E_fasciculatus_S2_contig7017.15176.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT03_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.800e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR
Sbjct:   16 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 82
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BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-18
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   13 QVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            Q +  ++QEL++++T  CF +CAK S GDR++S EQ CLA+CMDRY+DTM LVNKA+V + +R
Sbjct:   20 QAEQASMQELLSKLTSTCFTKCAKPSKGDRLDSGEQSCLALCMDRYVDTMQLVNKAVVDRQDR 82
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BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=3 Tax=Halictidae TaxID=77572 RepID=A0A154PK30_DUFNO)

HSP 1 Score: 65.9 bits (159), Expect = 1.480e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            Q+++Q+     QEL+T+MT++CF +C     G  ++SSEQ C+AMCMDRYMDT  LV+KA   +  R
Sbjct:   20 QIRQQIAVANAQELLTKMTEKCFKKCIN-KPGTTLDSSEQKCVAMCMDRYMDTFNLVSKAYSDRLQR 85
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BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=3 Tax=Hymenoptera TaxID=7399 RepID=A0A6J0CEK4_NEOLC)

HSP 1 Score: 65.1 bits (157), Expect = 3.120e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            Q+Q+Q+     QEL+T+MT++CF +C +   G  ++SSEQ C+AMCMDRYMD   LV+KA   +  R
Sbjct:   22 QVQQQIAVANAQELLTKMTEKCFKKCIQ-KPGTSLDSSEQKCVAMCMDRYMDAWNLVSKAYSNRLQR 87
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BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8XKK0_BLAGE)

HSP 1 Score: 64.3 bits (155), Expect = 5.020e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            Q+++Q+     QEL+T+MT++CF +C     G  ++SSEQ C+AMCMDRYMD   LV+KA  ++  R
Sbjct:   12 QVKQQIAVANAQELLTKMTEKCFKKCIN-KPGTSLDSSEQKCIAMCMDRYMDAWNLVSKAYGSRIQR 77
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BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=3 Tax=Cucujiformia TaxID=41088 RepID=A0A6J2YE62_SITOR)

HSP 1 Score: 64.3 bits (155), Expect = 5.690e-12
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            Q+++Q+     QEL+T+MT++CF +C  +  G  ++SSEQ C+AMCMDRYMD+  LV+KA   +  R
Sbjct:   18 QVKQQIAVANAQELLTKMTEKCFKKCI-SKPGTSLDSSEQKCVAMCMDRYMDSWNLVSKAYSMRIQR 83
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BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: mitochondrial (import inner membrane translocase subunit Tim13 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86BCA)

HSP 1 Score: 63.9 bits (154), Expect = 8.070e-12
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNK 177
            QL++Q+     QEL+T+MT++CF +C  T  G  ++SSEQ C+AMCMDRYMD+  LV++
Sbjct:   18 QLKQQIAVANAQELITKMTEKCFKKCI-TKPGSSLDSSEQKCIAMCMDRYMDSWNLVSR 75
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=4 Tax=Cucujiformia TaxID=41088 RepID=D6WDD5_TRICA)

HSP 1 Score: 63.9 bits (154), Expect = 8.270e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            Q+++Q+     QEL+T+MT++CF +C     G  ++SSEQ C+AMCMDRYMD+  LV+KA   +  R
Sbjct:   19 QVKQQIAVANAQELLTKMTEKCFKKCIN-KPGTSLDSSEQKCVAMCMDRYMDSWNLVSKAYSLRIQR 84
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=2 Tax=Chrysomelidae TaxID=27439 RepID=A0A653BMJ3_CALMS)

HSP 1 Score: 63.5 bits (153), Expect = 1.170e-11
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            Q+++Q+     QEL+T+MT++CF +C     G  ++SSEQ C+AMCMDRYMD+  L++KA   +  R
Sbjct:   18 QVKQQIAVANAQELLTKMTEKCFKKCVN-KPGTSLDSSEQKCVAMCMDRYMDSWNLISKAYGLRIQR 83
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit n=14 Tax=Formicidae TaxID=36668 RepID=A0A6J1PXN8_9HYME)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRYMDTMGLVNKAMVAKANR 201
            QL++Q+     QEL+T+MT++CF +C     G  ++SSEQ C+AMCMDRYMD+  LV+K    +  R
Sbjct:   20 QLKQQIAVANAQELLTKMTEKCFKKCIG-KPGTSLDSSEQKCIAMCMDRYMDSFNLVSKTYSERLQR 85
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7017.15176.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Mitochondrial1.800e-39100.00import inner membrane translocase subunit n=2 Tax=... [more]
Mitochondrial1.480e-1855.56import inner membrane translocase subunit n=1 Tax=... [more]
Mitochondrial1.480e-1247.76import inner membrane translocase subunit n=3 Tax=... [more]
Mitochondrial3.120e-1247.76import inner membrane translocase subunit n=3 Tax=... [more]
Mitochondrial5.020e-1246.27import inner membrane translocase subunit n=1 Tax=... [more]
Mitochondrial5.690e-1246.27import inner membrane translocase subunit n=3 Tax=... [more]
mitochondrial8.070e-1250.85import inner membrane translocase subunit Tim13 n=... [more]
Mitochondrial8.270e-1246.27import inner membrane translocase subunit n=4 Tax=... [more]
Mitochondrial1.170e-1144.78import inner membrane translocase subunit n=2 Tax=... [more]
Mitochondrial1.200e-1146.27import inner membrane translocase subunit n=14 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7017contigE_fasciculatus_S2_contig7017:6771..7209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score134.0
Seed ortholog evalue2.6e-29
Seed eggNOG ortholog2880.D7FT03
Preferred nameTIMM13
Model size204
KEGG koko:K17781
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
Exons2
EggNOG free text desc.protein import into mitochondrial inner membrane
EggNOG OGsKOG1733@1,KOG1733@2759
Ec32 ortholog descriptionMitochondrial protein import TIM8.13 complex subunit, Tim8 homolog
Ec32 orthologEc-24_004310.1
Cds size204
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842361.545135-CDS-E_fasciculatus_S2_contig7017:6770..68281696842361.545135-CDS-E_fasciculatus_S2_contig7017:6770..6828Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7017 6771..6828 -
1696842361.5590167-CDS-E_fasciculatus_S2_contig7017:7063..72091696842361.5590167-CDS-E_fasciculatus_S2_contig7017:7063..7209Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7017 7064..7209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7017.15176.1prot_E_fasciculatus_S2_contig7017.15176.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7017 6771..7209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7017.15176.1

>prot_E_fasciculatus_S2_contig7017.15176.1 ID=prot_E_fasciculatus_S2_contig7017.15176.1|Name=mRNA_E_fasciculatus_S2_contig7017.15176.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
QLQEQVQAKALQELMTQMTDQCFNRCAKTSSGDRINSSEQGCLAMCMDRY
MDTMGLVNKAMVAKANR*
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mRNA from alignment at E_fasciculatus_S2_contig7017:6771..7209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7017.15176.1 ID=mRNA_E_fasciculatus_S2_contig7017.15176.1|Name=mRNA_E_fasciculatus_S2_contig7017.15176.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=439bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7017:6771..7209- (Ectocarpus fasciculatus EfasUO2)
CAGCTGCAAGAGCAAGTCCAGGCAAAAGCTCTGCAGGAGCTGATGACGCA
GATGACCGACCAGTGCTTCAACCGATGCGCCAAGACTTCGAGTGGGGACC
GCATTAACTCGTCAGAGCAAGGGTGCTTGGCCATGTGCATGGACAGGTGT
GTCATTTCACAAGGTCGTGCGACGGTAGGCGCTCGTCAGTTGTACCGCAT
TTTCGATCTGGTTCGTGCTCGGTTTACAATATCAGATGTGTGAATTTCCA
GGGTGGGCGTAGCTGGTAGCCGGAGGCGACCTTGTTGGAGATTTTCGACG
TTTCCTGGACATGCGCCATCCACAAGCGAATCCGTCCCCCTCTACCTCCC
TACCCACCTCCGTCTTGTTCTTTTTCGCCAGGTATATGGATACGATGGGC
TTGGTAAACAAGGCAATGGTCGCAAAGGCGAACAGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7017:6771..7209-

>mRNA_E_fasciculatus_S2_contig7017.15176.1 ID=mRNA_E_fasciculatus_S2_contig7017.15176.1|Name=mRNA_E_fasciculatus_S2_contig7017.15176.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7017:6771..7209- (Ectocarpus fasciculatus EfasUO2)
CAGCTGCAAGAGCAAGTCCAGGCAAAAGCTCTGCAGGAGCTGATGACGCA
GATGACCGACCAGTGCTTCAACCGATGCGCCAAGACTTCGAGTGGGGACC
GCATTAACTCGTCAGAGCAAGGGTGCTTGGCCATGTGCATGGACAGGTAT
ATGGATACGATGGGCTTGGTAAACAAGGCAATGGTCGCAAAGGCGAACAG
GTGA
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