mRNA_E_fasciculatus_S2_contig7004.15161.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7004.15161.1
Unique NamemRNA_E_fasciculatus_S2_contig7004.15161.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Heat (shock protein 70 (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ7_FUCSE)

HSP 1 Score: 104 bits (259), Expect = 2.490e-24
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVA--------GAGGMPDMGDA 225
            MRNTINEEKVAS+LD A K+ IE+KISETIAWLD NQN+EKEEYEEK+K++E VC PII+ + A        G GGMPDMG A
Sbjct:  407 MRNTINEEKVASQLDAADKSAIESKISETIAWLDTNQNAEKEEYEEKQKELEGVCTPIIQKMAAAGGGGMPGGMGGMPDMGGA 489          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: HSP70 (protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.480e-24
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAG 201
            MRNTINEEKV+++LDEA K TIETKISETIAWLDANQN+EKEEYEEK+K++E VCNPII+ +  GAG
Sbjct:  552 MRNTINEEKVSAQLDEADKKTIETKISETIAWLDANQNAEKEEYEEKQKELEGVCNPIIQKMAGGAG 618          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: HSP70 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.160e-23
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 MRNTINEEK---------VASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAGGMP 210
            MRNTIN+EK         VAS+LD A KTTIETKISETIAWLD NQ++EKEEYEEK+K++EAVCNPII+ +  GAGGMP
Sbjct:  616 MRNTINDEKAGRRVVPVKVASKLDAADKTTIETKISETIAWLDGNQSAEKEEYEEKQKELEAVCNPIIQKMAGGAGGMP 694          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Hypothetical (protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQI5_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 1.890e-19
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAGG----MPDMGDAV------------PKIEEID 249
            MRNTI EEKVA++L    K  IE  + ET+AWL+ANQ +E EE+E K+K +E +CNPII  +  GAGG    MPDMG A             PKIEE+D
Sbjct:   71 MRNTIREEKVAAQLSSEDKEKIEKAVDETVAWLEANQLAEVEEFEHKQKDLEGICNPIITKMYQGAGGAPGGMPDMGGAGXXXPXXXXXXGGPKIEEVD 169          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B3H2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.560e-18
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAGG----MPDMGDAV-----------PKIEEID 249
            +RNT+N+EK+  +LDEA K  ++ K++ETI WLDANQ++EKEEYE K+K++E V NPI++ + A  GG    +PD G A            PKIEE+D
Sbjct:  484 LRNTLNDEKLQGKLDEADKKVVDDKVTETINWLDANQSAEKEEYEAKQKELEGVANPIMQKLYAAGGGAPGGVPDFGAAXXXXPPAASAQGPKIEEVD 581          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FCX7_CYPCA)

HSP 1 Score: 81.6 bits (200), Expect = 4.010e-18
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAGGMPDMGDAVP----------KIEEID 249
            MRNTI +EK+AS+L  A K  IE  I  +I WLD NQ +E +E+E+K K++E++CNPII  +  GAGG   M D VP          KIEE+D
Sbjct:   32 MRNTIKDEKIASKLPAADKKKIEDAIESSIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGEVPMDDEVPAPSGGSSAGPKIEEVD 124          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Molecular (chaperone DnaK (Fragment) n=3 Tax=Bacteria TaxID=2 RepID=A0A6L9HCA2_9CLOT)

HSP 1 Score: 83.2 bits (204), Expect = 4.700e-18
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAGGMPDMGD----------AVPKIEEID 249
            MRNTI +EK+AS+L  A K  IE  I E+I WLD NQ +E +E+E+K K++E++CNPII  +  GAGG   M D          A PKIEE+D
Sbjct:   97 MRNTIKDEKIASKLPAADKKKIEDAIEESIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGEAPMDDEAPAPSGGSSAGPKIEEVD 189          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Uncharacterized (protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1WQ66_PIG)

HSP 1 Score: 80.5 bits (197), Expect = 1.230e-17
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAG------GMPDMGDAV-------PKIEEID 249
            MRNTI +EK+AS+LD A K  IE  I E I WLD+NQ +E +E+E+K K++E++CNPII  +  GAG      GM + G +        PKIEE+D
Sbjct:   32 MRNTIKDEKIASKLDPADKKKIEDAIEEAIQWLDSNQLAEADEFEDKMKELESLCNPIIAKMYQGAGADMGGAGMDEDGPSAGGSSGPGPKIEEVD 127          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Uncharacterized (protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498KVK8_MALDO)

HSP 1 Score: 82.4 bits (202), Expect = 2.270e-17
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAGGMPDMGDAV-------------PKIEEID 249
            MRNTI ++K+AS+LD A K  IE  I + I WLD NQ +E +E+E+K K++E +CNPII  +  GAGG PD+G ++             PKIEE+D
Sbjct:  141 MRNTIKDDKIASKLDAADKKKIEDTIDQAIQWLDGNQLAEADEFEDKMKELEGICNPIIAKMYQGAGG-PDVGGSMDDDVPSAGGSGAGPKIEEVD 235          
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Match: Adenosinetriphosphatase (n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CNR4_OPUST)

HSP 1 Score: 79.3 bits (194), Expect = 2.780e-17
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKKVEAVCNPIIRNIVAGAGGMPDMGDAV-------------PKIEEID 249
            MRNT+ +EK+ ++L EA K  IE  I + I WLD NQ +E +E+E+K K++E+VCNPII  +  GAGG  DMG A+             PKIEE+D
Sbjct:   25 MRNTVKDEKIGAKLAEADKKKIEDAIDQAIQWLDNNQLAEADEFEDKMKELESVCNPIIAKMYQGAGG--DMGGAMDDDAPTAGASGPGPKIEEVD 118          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7004.15161.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Heat2.490e-2467.47shock protein 70 (Fragment) n=1 Tax=Fucus serratus... [more]
HSP704.480e-2477.61protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A... [more]
HSP701.160e-2369.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.890e-1950.51protein n=1 Tax=Chlamydomonas euryale TaxID=148691... [more]
Uncharacterized1.560e-1847.96protein n=4 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized4.010e-1848.39protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A... [more]
Molecular4.700e-1849.46chaperone DnaK (Fragment) n=3 Tax=Bacteria TaxID=2... [more]
Uncharacterized1.230e-1747.92protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1... [more]
Uncharacterized2.270e-1746.88protein n=1 Tax=Malus domestica TaxID=3750 RepID=A... [more]
Adenosinetriphosphatase2.780e-1746.88n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7004contigE_fasciculatus_S2_contig7004:83..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score107.5
Seed ortholog evalue3.2e-21
Seed eggNOG ortholog2880.D8LI58
Model size252
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
Exons2
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
Cds size252
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842360.3866434-CDS-E_fasciculatus_S2_contig7004:82..1091696842360.3866434-CDS-E_fasciculatus_S2_contig7004:82..109Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7004 83..109 +
1696842360.401667-CDS-E_fasciculatus_S2_contig7004:249..4741696842360.401667-CDS-E_fasciculatus_S2_contig7004:249..474Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7004 250..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7004.15161.1prot_E_fasciculatus_S2_contig7004.15161.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7004 83..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7004.15161.1

>prot_E_fasciculatus_S2_contig7004.15161.1 ID=prot_E_fasciculatus_S2_contig7004.15161.1|Name=mRNA_E_fasciculatus_S2_contig7004.15161.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=84bp
MRNTINEEKVASRLDEAAKTTIETKISETIAWLDANQNSEKEEYEEKKKK
VEAVCNPIIRNIVAGAGGMPDMGDAVPKIEEID*
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mRNA from alignment at E_fasciculatus_S2_contig7004:83..474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7004.15161.1 ID=mRNA_E_fasciculatus_S2_contig7004.15161.1|Name=mRNA_E_fasciculatus_S2_contig7004.15161.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=392bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7004:83..474+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCAACACCATCAACGAGGAGAAGGTTCGTGTCTTGGCGCAGTGATA ATGTTTTGAGATGGTGCTGGCCCCAATTGTTTTGCGTTCACATGCTTTCT AGATAGATCGACACGTATGCCAACGATTTCATACCTCCTTCCCCCGAAAC TACAACAAAAATAACAGGTTGCCTCTAGGCTGGACGAGGCCGCCAAGACG ACGATCGAGACCAAGATCTCGGAGACCATCGCATGGCTCGACGCCAACCA GAACAGCGAAAAGGAGGAGTATGAGGAGAAGAAGAAGAAGGTTGAGGCCG TGTGCAACCCAATCATCCGGAATATTGTTGCCGGGGCCGGCGGCATGCCG GACATGGGTGACGCCGTCCCTAAGATAGAGGAGATCGACTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7004:83..474+

>mRNA_E_fasciculatus_S2_contig7004.15161.1 ID=mRNA_E_fasciculatus_S2_contig7004.15161.1|Name=mRNA_E_fasciculatus_S2_contig7004.15161.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=252bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7004:83..474+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCAACACCATCAACGAGGAGAAGGTTGCCTCTAGGCTGGACGAGGC
CGCCAAGACGACGATCGAGACCAAGATCTCGGAGACCATCGCATGGCTCG
ACGCCAACCAGAACAGCGAAAAGGAGGAGTATGAGGAGAAGAAGAAGAAG
GTTGAGGCCGTGTGCAACCCAATCATCCGGAATATTGTTGCCGGGGCCGG
CGGCATGCCGGACATGGGTGACGCCGTCCCTAAGATAGAGGAGATCGACT
GA
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