mRNA_E_fasciculatus_S2_contig7.15138.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7.15138.1
Unique NamemRNA_E_fasciculatus_S2_contig7.15138.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7.15138.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA2_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 1.950e-103
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 1 
Query:    1 AAKKAAKAREDAANLYYPIIFGVNLIYVLYRGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQFVSAFSAYGTYIYMLVPGYYACLSGYWVFRKLSGWVRSQQELNASEEPSATDLKRQAKKERKAARAPRVRMR 471
            AAKKAAKAREDAANLYYPIIFGVNLIYVLYRGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQ VS FSAYGTYIYMLVPGYYACL+GYWVFRKL GWVRSQQELNASEEPSA DLKRQAKKERKAARAPRVRMR
Sbjct:   33 AAKKAAKAREDAANLYYPIIFGVNLIYVLYRGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQLVSTFSAYGTYIYMLVPGYYACLAGYWVFRKLGGWVRSQQELNASEEPSAADLKRQAKKERKAARAPRVRMR 189
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BLAST of mRNA_E_fasciculatus_S2_contig7.15138.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.990e-22
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = 1 
Query:    1 AAKKAAKAREDAANLYYPIIFGVNLIYVLYRGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVG-GGAYFDVFAVCVAGQFVSAFSAYGTYIYMLVPGYYACLSGYWVFRKLSGWVRSQQELNASEEPSATDLKRQAKKERKAARA 453
            AAKKAA+A+    ++Y P+I  +N+IYVL+RG++ + +FG+W   GL  TS +YY+ Y G++ A   G G GG YFD+  +    Q V  F+  G YIY++VP Y            L G++  Q+ +  S+EPSA DLK   +  ++A RA
Sbjct:    5 AAKKAAQAQAKTTSVYLPLIIAINVIYVLWRGVYHYDSFGKWHKAGLVFTSFMYYLSYRGVVGAVAMGTGNGGYYFDLLVLTAVNQIVCLFTDKGWYIYLMVPAYV-----------LYGFL--QRAIAKSKEPSAQDLKTPEELAQEAKRA 143
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BLAST of mRNA_E_fasciculatus_S2_contig7.15138.1 vs.
Match: Aste57867_10754 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR68_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.560e-12
Identity = 50/150 (33.33%), Postives = 72/150 (48.00%), Query Frame = 1 
Query:    1 AAKKAAKAREDAANLYYPIIFGVNLIYVLYRGLWCFRTFGRWQVFGLAVTSTVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQFVSAFSAYGTYIYMLVPGYYACLSGYWVFRKLSGWVRSQQELNASEEPSATDLKRQAKKERKAAR 450
            AAKKA KA    +   +  I  VN++Y+LYR LWC+ +F  W   G A+  T  Y  Y   + +A  G       DV  V +  Q  + FS Y  Y+ ++VPGY      Y+V +K  G+  S    +A+        KR AK E++  R
Sbjct:    5 AAKKAQKAGTALSTRLHQTIIPVNVVYILYRVLWCYSSFSSWHATGYAILLTATYASYTMAVGSALEGTNNEYAMDVLIVTIVVQAGTLFSDYFWYLSLIVPGYVL----YYVGQKAIGYFFSGSASDAAGGGEPGVSKRMAKLEKRGVR 150
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7.15138.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.950e-10396.82protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA2... [more]
Uncharacterized1.990e-2239.47protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Aste57867_107541.560e-1233.33protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7contigE_fasciculatus_S2_contig7:28091..29320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score63.9
Seed ortholog evalue7.6e-08
Seed eggNOG ortholog157072.XP_008871289.1
Preferred nameTMEM208
Model size474
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006508,GO:0006605,GO:0006624,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010256,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0051179,GO:0051205,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827,GO:1901564
Exons3
EggNOG free text desc.vacuolar protein processing
EggNOG OGsKOG3269@1,KOG3269@2759
Ec32 ortholog descriptionProtein of unknown function DUF788, TMEM208
Ec32 orthologEc-26_002400.1
Cds size474
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842357.6271324-CDS-E_fasciculatus_S2_contig7:28090..281841696842357.6271324-CDS-E_fasciculatus_S2_contig7:28090..28184Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7 28091..28184 +
1696842357.6417394-CDS-E_fasciculatus_S2_contig7:28663..288691696842357.6417394-CDS-E_fasciculatus_S2_contig7:28663..28869Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7 28664..28869 +
1696842357.654624-CDS-E_fasciculatus_S2_contig7:29146..293201696842357.654624-CDS-E_fasciculatus_S2_contig7:29146..29320Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7 29147..29320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7.15138.1prot_E_fasciculatus_S2_contig7.15138.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7 28091..29320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7.15138.1

>prot_E_fasciculatus_S2_contig7.15138.1 ID=prot_E_fasciculatus_S2_contig7.15138.1|Name=mRNA_E_fasciculatus_S2_contig7.15138.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=158bp
AAKKAAKAREDAANLYYPIIFGVNLIYVLYRGLWCFRTFGRWQVFGLAVT
STVYYVCYHGMLEAAKSGVGGGAYFDVFAVCVAGQFVSAFSAYGTYIYML
VPGYYACLSGYWVFRKLSGWVRSQQELNASEEPSATDLKRQAKKERKAAR
APRVRMR*
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mRNA from alignment at E_fasciculatus_S2_contig7:28091..29320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7.15138.1 ID=mRNA_E_fasciculatus_S2_contig7.15138.1|Name=mRNA_E_fasciculatus_S2_contig7.15138.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1230bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7:28091..29320+ (Ectocarpus fasciculatus EfasUO2)
GCAGCGAAGAAGGCAGCTAAGGCCAGGGAAGATGCGGCCAACCTATACTA
CCCTATCATCTTTGGCGTAAACCTCATCTACGTGCTGTATCGAGGTAGGG
GTCTGCGGGGGGTGGTAAATCGTAAATCGCAGAGTGGGTTGTGTGGGAGC
AGCTGTGACTGCTGTCTCTATAATAGCAGCGCTTTGCTTCATTTCACTAC
TGTATACACCCATGACCCCGATCGTCCACCAGCGCGATCTCGGGCTTCAA
GACTTATTTTGAGAGAGTGCGGCCAAGGAAGTGTTGTGAGGGAAGCTCCA
GCTGCTAGGATCGACCATCTTTCTCTCAAAGCACGGCTTGAATTACATGC
GATGGAGCCCGGAGTGGGGCATCGATTTATCGCGGCAAATTCATTTTCCC
CGTCCCTGGGGATGGACCAGAAGATATTCACGGGACCCCAAGCTTTTTAA
TCCAATGTCCAGCACTCACACTGTGACGTGGCCTGTTGGCAGAATGCATC
AACACACCGATGGCGAGTTGTGCGTCTTACGTTTGTCTCTTGTACGCTCG
TTTCTCGATACCACGCTCGCAAGGCCTATGGTGCTTTCGAACGTTCGGCC
GGTGGCAAGTGTTTGGGCTTGCGGTGACCTCAACGGTGTACTACGTCTGC
TATCACGGAATGCTAGAGGCCGCGAAAAGCGGCGTGGGTGGAGGGGCGTA
CTTCGACGTGTTCGCAGTGTGTGTGGCGGGCCAGTTCGTGTCAGCCTTCA
GTGCGTACGGGACCTACATATACATGTTGGTGAGTAGCGTGTTTCGGGGT
CTTCGTGAGCTTGCACAGCAACATTCACACTTCGTGGGTTATTTGTACGG
GTACATCGGTGTGGTTTTGTACAAGAGGGAGGGCAGTACGTGTGAAAAGC
GCTTCGGTTGCCCATCTCGTATCACAGTTGCACAGCCTTTCTGTTCTGGC
TGCATGTGTAGGTGTTGCTGTTTGTGCCAAGAGTCACTCAATACAGCCGA
GTGGCCGCAGCACGCAACTGACCTGTTGTACATGGGCTTGGTGTTCAACA
TTCCAGGTGCCAGGGTATTACGCGTGCCTATCAGGGTATTGGGTATTCCG
AAAGCTGAGTGGATGGGTGCGCTCTCAACAAGAATTGAATGCGAGCGAGG
AGCCCTCGGCGACAGATCTTAAGCGTCAGGCGAAGAAGGAGAGGAAGGCA
GCGAGAGCTCCAAGAGTTAGGATGCGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7:28091..29320+

>mRNA_E_fasciculatus_S2_contig7.15138.1 ID=mRNA_E_fasciculatus_S2_contig7.15138.1|Name=mRNA_E_fasciculatus_S2_contig7.15138.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=474bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7:28091..29320+ (Ectocarpus fasciculatus EfasUO2)
GCAGCGAAGAAGGCAGCTAAGGCCAGGGAAGATGCGGCCAACCTATACTA
CCCTATCATCTTTGGCGTAAACCTCATCTACGTGCTGTATCGAGGCCTAT
GGTGCTTTCGAACGTTCGGCCGGTGGCAAGTGTTTGGGCTTGCGGTGACC
TCAACGGTGTACTACGTCTGCTATCACGGAATGCTAGAGGCCGCGAAAAG
CGGCGTGGGTGGAGGGGCGTACTTCGACGTGTTCGCAGTGTGTGTGGCGG
GCCAGTTCGTGTCAGCCTTCAGTGCGTACGGGACCTACATATACATGTTG
GTGCCAGGGTATTACGCGTGCCTATCAGGGTATTGGGTATTCCGAAAGCT
GAGTGGATGGGTGCGCTCTCAACAAGAATTGAATGCGAGCGAGGAGCCCT
CGGCGACAGATCTTAAGCGTCAGGCGAAGAAGGAGAGGAAGGCAGCGAGA
GCTCCAAGAGTTAGGATGCGGTAG
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