mRNA_E_fasciculatus_S2_contig6978.15117.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6978.15117.1
Unique NamemRNA_E_fasciculatus_S2_contig6978.15117.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig6978.15117.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P4_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 2.280e-84
Identity = 153/157 (97.45%), Postives = 153/157 (97.45%), Query Frame = 1 
Query:   58 MPGNKKKNKGANKAXXXXARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKQATDKYNALMKQ 528
            MPGNKKKNKGANKA    ARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKQATDKYNALMKQ
Sbjct:    1 MPGNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKQATDKYNALMKQ 157
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BLAST of mRNA_E_fasciculatus_S2_contig6978.15117.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIF9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.760e-22
Identity = 64/127 (50.39%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:  115 RSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKQ 495
            +SNAANK+DL GLDE+L++P  M + + + V  +  K ++G +NA+IG++GF+QAT+NPAMF +AMSML DP+   XXXXXXXXX       ++M +LK + +F++AM  AQ K+Q L+ DPEK++Q
Sbjct:   17 KSNAANKEDLDGLDELLADPALMKQFEDKTVPPA--KKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXXQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6978.15117.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.280e-8497.45protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P4... [more]
Uncharacterized3.760e-2250.39protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6978contigE_fasciculatus_S2_contig6978:570..6576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008620.1
Cds size768
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6978.15117.1prot_E_fasciculatus_S2_contig6978.15117.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6978 627..6576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.2272382-UTR-E_fasciculatus_S2_contig6978:569..6261696842355.2272382-UTR-E_fasciculatus_S2_contig6978:569..626Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig6978 570..626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.2383618-CDS-E_fasciculatus_S2_contig6978:626..7361696842355.2383618-CDS-E_fasciculatus_S2_contig6978:626..736Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6978 627..736 +
1696842355.2479897-CDS-E_fasciculatus_S2_contig6978:2077..21861696842355.2479897-CDS-E_fasciculatus_S2_contig6978:2077..2186Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6978 2078..2186 +
1696842355.2583206-CDS-E_fasciculatus_S2_contig6978:3095..32811696842355.2583206-CDS-E_fasciculatus_S2_contig6978:3095..3281Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6978 3096..3281 +
1696842355.2689445-CDS-E_fasciculatus_S2_contig6978:3896..41511696842355.2689445-CDS-E_fasciculatus_S2_contig6978:3896..4151Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6978 3897..4151 +
1696842355.2790494-CDS-E_fasciculatus_S2_contig6978:6118..61781696842355.2790494-CDS-E_fasciculatus_S2_contig6978:6118..6178Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6978 6119..6178 +
1696842355.2898455-CDS-E_fasciculatus_S2_contig6978:6528..65761696842355.2898455-CDS-E_fasciculatus_S2_contig6978:6528..6576Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6978 6529..6576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6978.15117.1

>prot_E_fasciculatus_S2_contig6978.15117.1 ID=prot_E_fasciculatus_S2_contig6978.15117.1|Name=mRNA_E_fasciculatus_S2_contig6978.15117.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=256bp
MPGNKKKNKGANKAKNASARSNAANKDDLAGLDEILSNPEQMAEAQREAV
EASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSAVKEAEAM
MNDPEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKQATDK
YNALMKQQQDAAAAGTPAAAAAAAAAGGGEGAAAAAGATEAGKEAAAGGE
DDGEPPVPEAGAEEETPAGKDEGASAGKGAAEATPADAPEAEAAAGKETP
AEASS*
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mRNA from alignment at E_fasciculatus_S2_contig6978:570..6576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6978.15117.1 ID=mRNA_E_fasciculatus_S2_contig6978.15117.1|Name=mRNA_E_fasciculatus_S2_contig6978.15117.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6007bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6978:570..6576+ (Ectocarpus fasciculatus EfasUO2)
CCTGGGTACACTGCGGGGCGCACGGCGGCACACACCTGGGGTAAATAGGC
AGCAAGGATGCCAGGCAACAAGAAGAAGAACAAGGGCGCCAACAAGGCCA
AGAACGCGTCTGCTAGGAGTAATGCCGCCAACAAGGATGACCTCGCCGGG
CTTGACGAGATCTTGAGGTGAGGCAAGGCTCCAGGAGCGGAGGCAAACAC
GGCAAACCATCAGACCCAGCTTGGAGCAAGGGCATGCATGCTGCTTCAAC
AGCAACTATGATATGATAGCGGTCGCACCCACCGAGTTTACCCCGATACA
CGTGTGACTCTCCTCCACGTGTGCCACGGTGCACTCTCTTCGCATGAGGC
CGAGGGAGTGGTATCAAGGCATTGGCTCGTTGCCCTGCTGCCCTATTGTG
TAGGCGACTCATGCGCTCGAACCAGCACATGGTAGGACTTGGTCTGCATC
TGCTGGTAATTGTATGCGAAATGTGTTCAGACACACAATCGGCCTCCACG
AATCGGCTCCGTGTACGCGTGTATCGTTCACATCCATACGCATATAAGAG
GGGTGGCGACTACTCCCGTCTCCTAGTGGCCGAAAGGATGTCCCTTGCTA
CAAGTAATCTCCTCCATTGCAATCGCGAAAATCTCGTCCATGTAGCTCTG
CAGCACAATGTACAGCAGCAGGTCTCATCGCACGCTCGTTGGATGTGTCC
GTCCCTTGGTTGCAGTCTATCAGTCTATGCTCGTGCTCGTGGTGTACGTG
CCGACTAGTGCCGACCCAATCAAGGTTGACTGCTTGCATCGGTCTTGTTG
CAGTCATACAAATGCTTCTCTTGCCTGGTTGAGCATTAAGCAGCATCATG
TTTTCAGATTGACATGTGCTGCTGTAGAACACACACGCACCTTCGACCAT
GTACCATGAGTGTGCTGCTGTCGGGCAGTCAGCAGTACACAGCGATGTAT
GTAGACAGCAGTGCGTACGGCGGGAGCACCACCACAAGCAGGAGGTATGC
CCGGAGCTCCGTATAACAGGCGTTACGGCAGCATACCGGGACACAGCAGT
GCGCCCTACCTTTTCTTCGGCTTGATATATCGTTTTCCAATCTTGTTGCC
AAAAAAGTGCATTATCAGTCCGCTGCGTACGCTGATTGCCTCCGTAGGTT
TAATGTTGACGGACCGACGGCGTTTTTTTGGGCAGCCCTCTCTTGATCGC
AACCCCTACCGTTGGTGCTTGATGTGCCCTTCTCCAGACGGCTCTGCACT
CGAAATGCCCCCGTCCAAATCCCGTGGTATCCATATCTGATGGTGCTTGT
TCAAGCTTTGACCACTCCCAAATCCATGTAGATCCCTTAGCGTCCTGTAG
TAGATCAAATACCCTACCCTACCGAAGAAGAAAGCAGAGGTGCGCCTCCA
CAACGGTGCAAGACTAGGTACATTTTGATTTTGCCTCCCCGCTCTCGGCT
GCAATTACTTACCCCCCTCTATCCTCCCGCCTGCTGTGCCCCCCTGCGCT
GTTCTCAGTAACCCGGAGCAAATGGCAGAGGCGCAGCGAGAGGCGGTGGA
AGCGAGCGGTTTTAAGCCGCGCTCGGGCAAGCAGAACGCTCAGATCGGCC
TCAAGGGTTTCACGCAGGTGATTTACAGAAGGCGTTCGTTTGGGTGTGAT
GAATGAGGTGACACGTTGCGGCTCCACCACCCTGTCCGATTTGTGCACCG
CGGCAAGACTTGATGCAGTGCGTGAAGGAATGCGCTATGCGCCAGCACCT
ATCGTAAGAATATCTTGCTTGGCACGAGGTCCGGTTCTCGTTTCCTCTGC
GGGGTAGTCCAACCAAACCGCGACATGTTTATACTATTAGGTTTCAGTGT
AGGATTCTTCACTGAGCTCCTGGTCAAACTCAAGAAAATACATGTTTTTC
TTTAGCCTGAATTACTTATCTCCCAGTTTGTTGAGTTGTAGGGCGTACCG
TGGGAGCATGCTCAGGCGGAGGATTACGCTCCTTTGTGACGACCCGTTCA
CAGCAGCGTACACGGGCCGTGTAGACGATCAGCCGGTTCTGTCTGCGTTG
CTGTGCCCCGACTTCACTTGACGGTGGAGTGCGAGGCGCGAAGCCCCTTC
GATGGCAGAGAGGGAGGCGTGCCCCTCATGCTTGGTGGAGCCTGTCTTTT
CCGAAAGACGTGGGGCACGAACGAGCGCTCGCAATCTAGATAATTACATC
ATTTGTTTTCCACCATGTACTCCGCACAGGATGAAGAAGCGCAAGGATAT
TTGCCCGTCGCGTACGGCGTTGAATTCGGCCGCGCGTGTGTGTTTTGTTT
TGGGCTGCTTTGTACATCTGATGGTGTATCTAGGTCACCACGAACCAAGG
GGGGTCTCCGTTTTCAACTGTGTATGTCGAGCCTTACAAACACGAATGTA
CGGCAAACAATAACACGAACATCAACACCACCACCAACACCTTTTTTTTT
TGTGGAGTCTTACGAACACGGATGACAAAAACAATAACAACAACAACAAC
AACATCAACAACAACAACACACACAGGCGACTCAGAATCCGGCCATGTTC
AAGGACGCGATGAGCATGCTCGGAGACCCTTCGGCCGTGAAGGAGGCGGA
GGCGATGATGAACGACCCGGAGTTCAAGTCGGAGATCAACCAGTACATGG
AGACGCTTAAGAACAACTCGGCCTTCCGCGACGCCATGGCCGAGGCCCAG
CGAAAGTACCAGGTGGGTGGAGGTTAGCATGCCGGGGGTTTTGTTGGGTG
TCTTGGGTGATTTCGGGCAGCCCCTTTGCCCTTCCGAAAACCACAACTTC
ACTGTTTTTTTTTGTTTCTGCGCCAGGCCTTTTCTTTCGGGGGGGGGGGG
GGGGGTGTGCGACAAGGAATATAAGGGGAGTTTTTTTNNNNNNNNNNTTA
AGAGTGTCGGCGCGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGG
GGGGGGGGGGTCACAAGCGATAACAGGGAGTCCTGGTTATTTAGTGGTCG
ACCGGGGAGAAGCAGGGTTTGGGGTTCCGAGCCGGCAAAGGGATATGATC
ACACCACCACCCCGACCGCAAGCATACCAATACCGCAGCGCACAATATGG
GAATATCTACTTGTTGAGTAATACCGACAACACTATAATAACATCAGAAT
ACCAGGTACCAAACTTTGGTTGGCAGGTAGATGCTTGCGGACACTGTCGG
GCAGTTCTGGTGCAATCACACGAGAAATGCGACACGCCGCCAAGAACACA
TTGTTTCTTTGTCAGTATGACACAACCACCAACACCTTTTTGCACCGGCA
ACAACCATGAATGAATTAATTCTACAGGCTCTGTTGGCAGACCCCGAGAA
GATGAAGCAGGCGACGGACAAGTACAATGCCTTGATGAAGCAGCAGCAGG
ACGCCGCAGCGGCGGGAACGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCG
GGGGGTGGCGAGGGAGCGGCGGCGGCGGCGGGGGCGACGGAGGCAGGGAA
GGAGGCGGCGGCGGGGGGGGAGGACGACGGCGAGCCGCCGGTCCCCGAAG
CAGGAGCGGAAGAGGAGACCCCCGCGGGCAAGGTGGGTGTTGATAGCCTA
GAGTAGGGCACCCTCTCTTGTTTTTGTTTTGTGTGTATGAAGGTGCAAGA
GTGTGTTTGTAATCACTTGTGTGCGTGTAGCGGTGGGTGTGAAAACCTAC
CGTTCAGCCCTTCTGTTTTTTTCTCTTCCATGTGTGTATGTCTTTGTTGT
TAGCATCGGCCGCGCTAACCGGCTGGCCAATGAAAAGACGTCCGCCTCAA
TGCGGTTGGAAAAACCAAACACTTCGTAAATGCCATGAAGTGAACTGGGA
CCCCGTGAGGGGGCGGCATGTGTGTTTTATTTGTGTGTATGTATTTTTTT
TGTCCCCAATCGCCTTCATTCTGATGCGTTTACACAAGATTCTCTTTCGG
GGGGTTAGAGGCTTGCCTCCCGGGGGCGGCACAACAGGGCATGGCCAATC
ATGTCGCTGGTTGCGGTGCCAGGTGGGTGCAAGAATCGGTTGCGAAAGTC
ACTGCGCTGATGGTATGTCCTTGCGCGTTCCCTGCGGTTGTGCAACGTGT
TCCGTGATGACATGGTAGTAACCAGGTAGGTTCCTGTCATGTCATCACGG
AACACGTTGCACAAGGGCAGGGAATGCGCACGAAAGTACCACCAGCGCAG
TGACTTTCGCAACCGATTCTTGCACCCACCTGGCACTGCAGCCCACGACA
TGGTCGACCATGCCCTGTTGCGCTGCCCCCGGGAGGCAAGCCACCATCCC
TCAGAAGCAGAGCTTTGAACACCGTGCTCTGTGATGGTGATGGCATTGTC
GTAAGGTTACTATCATGCCTTCAGAGATCCCATTTATCGTGTGCCAGACG
CGCGGAAGCTGGCATCACCAGCGCCGTGACTTGGCGACCGTTTATTGCAC
CCACCCGACGTGCATACGCCTGGTGAGCTCAGGGCATGCGCGGTGATGTG
CCGACGAGTCTTTTGCGTGCCCCTGAGAAGAAAGCGTGACAGAAAGATTC
GTGTTAGCCAGAGGAAGATGTTCCAGGGCACCAATCACATCGAAATGATG
AAAACACAAAACCACCTCTTTCGGTAGAAAAACGTCCCATATTAAAGTCG
CCATGTGATTATTTTCGTTTTTGCATCGGCAGTGTACCGCTTGAGGCACA
GAGTGTGGAATTGAACCCTGTGCTGTAGAGCTCGCTTGAGCCGCATACCG
TTTTTCTTTTGTGAGAGATTGCGAGGAGCATGTTTTGGGCACGGAGCTCA
ACGCGAAAATAAAAACACCCGGCCTGGAGAACCCTGCAAGAACGGCTAGA
ACGGTCCCGTAACTCTATTGTAACTAACTCTAGGTAGCAGAGGGGGACTC
AGAATGTTGGTTTTTGTAACCCTTCGTGAAGATCTGGATTCGTTCGGTCC
AAGCCTGGAAGGTTACCTTAGCCTATAAAAGGGGCGGTCGATTTCAAGTT
GCGAGCTGCTGCTGCTGCTGCTGCTGCGTATTCTGTTGATCGGTGCATTT
GTGTTGATTGTTTGTTCGTGAGTCTGGGTCTGGAGGGCGGCTTCGCGTTA
ATTGGCAGCAGCGGTAGGAGTAGTTCATTTTTGTTCCTCTCTGCGTTCAG
AAGACGGCTATTAAACGTCGCGGTTGTGTAGGTGGTATGTAGGCACGCTT
CACGCTTCAGCTGCCGCCCCTCTGCCCCACACCGATTGTTTCGCCGGTAT
CCTCCCCAACCTTGCCACAAAGAATGTATCCAAAACACGTGTTTGGCGCA
TTCGACGCCCCTTGTTCGCGATGCGGATACATGGACGAGGGGTGTGAACA
GTTGGGCCATGGGCGGGGGAGGTATGCACCTATCCCTGTCGCCAAACGGT
AGATGAACAGCAGTGCTGCTCTCATTAGGTGGCCTGATGAAGCTGCTGCT
GCACACGCGCCCGTGGGAAGGATCTTGACCCCCCCGCTTGTTCCTTGCTC
CTTGCTGTGTGCTGTGTCCATCTACTCGGGCGCGCGATGTTCCCTTCAGG
ACGAGGGGGCTAGTGCGGGAAAGGGAGCGGCAGAGGCTACACCGGCCGAT
GCGCCTGAGGTGCAGTATGCAACACGTGGTGTTGAACCATTGACTGTAGA
TATAGGTTGGTTGTTTTTTTTTCGTTGCGGGACGTTCGTTGGTGAGCGCG
GCGCGTTCATGGCGTTGATTCCGCCCCTCTCATTTTCCTTTTTCAGCCCC
CCTACGTATGTAGCGAGTGTTCTGTCCCTTGATTTGATGGTCGTTCCTCT
TGGCGAATATTCTAGTTCGTCACCAGCAGAACAACTCTGTCTTGCCTTGC
TCTCCAGAACGCCGGGCTGTCGGAACGACCCGACCTCTTGCTGCTTTTCT
CGATTGACGTCACTTTCTCGCTGCCTCGTATTCGGATGGATTCGTGTCGA
CACCTGCAGGCGGAAGCTGCGGCGGGAAAGGAGACCCCGGCGGAGGCGTC
TTCGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6978:570..6576+

>mRNA_E_fasciculatus_S2_contig6978.15117.1 ID=mRNA_E_fasciculatus_S2_contig6978.15117.1|Name=mRNA_E_fasciculatus_S2_contig6978.15117.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=768bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6978:570..6576+ (Ectocarpus fasciculatus EfasUO2)
ATGCCAGGCAACAAGAAGAAGAACAAGGGCGCCAACAAGGCCAAGAACGC
GTCTGCTAGGAGTAATGCCGCCAACAAGGATGACCTCGCCGGGCTTGACG
AGATCTTGAGTAACCCGGAGCAAATGGCAGAGGCGCAGCGAGAGGCGGTG
GAAGCGAGCGGTTTTAAGCCGCGCTCGGGCAAGCAGAACGCTCAGATCGG
CCTCAAGGGTTTCACGCAGGCGACTCAGAATCCGGCCATGTTCAAGGACG
CGATGAGCATGCTCGGAGACCCTTCGGCCGTGAAGGAGGCGGAGGCGATG
ATGAACGACCCGGAGTTCAAGTCGGAGATCAACCAGTACATGGAGACGCT
TAAGAACAACTCGGCCTTCCGCGACGCCATGGCCGAGGCCCAGCGAAAGT
ACCAGGCTCTGTTGGCAGACCCCGAGAAGATGAAGCAGGCGACGGACAAG
TACAATGCCTTGATGAAGCAGCAGCAGGACGCCGCAGCGGCGGGAACGCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGGGGGGTGGCGAGGGAGCGGCGG
CGGCGGCGGGGGCGACGGAGGCAGGGAAGGAGGCGGCGGCGGGGGGGGAG
GACGACGGCGAGCCGCCGGTCCCCGAAGCAGGAGCGGAAGAGGAGACCCC
CGCGGGCAAGGACGAGGGGGCTAGTGCGGGAAAGGGAGCGGCAGAGGCTA
CACCGGCCGATGCGCCTGAGGCGGAAGCTGCGGCGGGAAAGGAGACCCCG
GCGGAGGCGTCTTCGTGA
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