mRNA_E_fasciculatus_S2_contig6976.15115.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6976.15115.1
Unique NamemRNA_E_fasciculatus_S2_contig6976.15115.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 1.160e-148
Identity = 234/293 (79.86%), Postives = 239/293 (81.57%), Query Frame = 1
Query:    4 QGIEIPAVLVSHATGERLWSNRSWIPGRQGRLRASVGAVGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALAFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLENQSDPAGTSGSNSGRMSGTADAT-GRGDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGFMGREDDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRD 879
            QGI+IPAVLVSHATGERLWSNRSW+PGRQGRLRASVGA GHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFAL FTWYQRGYRTRAMRKLKSFTFRRRPPPPTL NQSDPAGTS SNSGR SGT DAT G+  S                                            NGFM REDDDLCAICLETYEDGDSLTGLPCRHSFHT+CIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLR+
Sbjct:  211 QGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLGNQSDPAGTSSSNSGRASGTVDATTGQASSLGNGTGSAASEDNSSSND--------------------------NGFMRREDDDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE 477          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: Protease-associated (RING/U-box zinc finger-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBK1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.420e-22
Identity = 86/276 (31.16%), Postives = 119/276 (43.12%), Query Frame = 1
Query:   10 IEIPAVLVSHATGERLWS------NRSWIPGRQG--RLRASVGAVGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALAFTWYQRGYRTRAMRKLKSFTFRRRP--PPPTLENQSDPAGTSGSNS-GRMSGTADATGRGD------------SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNG---------------FMGREDDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAF 723
            I IP+V VSH+TG  L +       +S  PG +G  R+R ++   GH+    + +G +E L  Y+++S++LL+FSG CGL+ AL  T YQR +R RA+R LK   ++R+     P L   S   G+S S S   +   A  T   D            S                                            +G               +   E+   CAICL+ YEDGD L  LPC+H +H +CI PWL  KS  CPMCK   F
Sbjct:  119 ITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLAYNSKDKGSSASTSPSALLSRASPTSLPDRRKGLRGLWGLLSLRRVINKQRSRIPLPLPAHPRLESVPASGLGKARGGRSPCPLTGDGEAPTACEGVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 394          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZZ7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.750e-21
Identity = 86/276 (31.16%), Postives = 119/276 (43.12%), Query Frame = 1
Query:   10 IEIPAVLVSHATGERLWS------NRSWIPGRQG--RLRASVGAVGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALAFTWYQRGYRTRAMRKLKSFTFRRRP--PPPTLENQSDPAGTSGSNS-----GRMSGTADATGRG---------------DSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGFMG--------REDDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAF 723
            I IP+V VSH+TG  L +       +S  PG +G  R+R ++   GH+    + +G +E L  Y+++S++LL+FSG CGL+ AL  T YQR +R RA+R LK   ++R+     P L   S   G++ S S      R S T+    R                D                                                +G         E+   CAICL+ YEDGD L  LPC+H +H +CI PWL  KS  CPMCK   F
Sbjct:  147 ITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLTYNSKDKGSNASTSPSAPLSRASPTSLPDRRKGLRGLWGLLSLRRVMDKQRSRIPLPLPAHPHLESLPASGLGKGRGGRFPCPLTGDGEAPTAGEVVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 422          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJ90_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.340e-12
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  568 EDDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAFGKGGL 738
            +D+DLC+ICLET+E    +  LPCRH FH ECI PWL  +S+ CP+CK EA     L
Sbjct:  227 DDEDLCSICLETFERETLVKVLPCRHEFHQECIDPWLENRSSQCPLCKREALDNASL 283          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TGT7_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 3.950e-12
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query:  559 MGREDDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEA 720
            M   D D+CAICL+ +EDGD L  LPC+H FH ECI PWL  +   CP+CK ++
Sbjct:  269 MSENDPDVCAICLDDFEDGDDLRKLPCKHEFHIECIDPWLLTRKRTCPICKQDS 322          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Diceros bicornis minor TaxID=77932 RepID=A0A7J7EFK6_DICBM)

HSP 1 Score: 75.5 bits (184), Expect = 4.910e-12
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  553 GFMGREDDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAFGKGG 735
            G +GR++ D+CAICL+ YEDGD L  LPC H++H +C+ PWL+     CP+CK +     G
Sbjct:  151 GKVGRDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQG 211          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: Hypothetical (protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R701_DUNTE)

HSP 1 Score: 71.2 bits (173), Expect = 5.770e-12
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 1
Query:  571 DDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAFGK 729
            D + CA+C++ YE G+++  LPC+H+FH +C+R WLS  S LCP+CK+   G+
Sbjct:   61 DAETCAVCIQEYEPGEAIMHLPCKHAFHDQCVRSWLSTYSKLCPVCKASVTGE 113          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: E3 (ubiquitin-protein ligase RNF13 n=1 Tax=Myotis davidii TaxID=225400 RepID=L5M604_MYODS)

HSP 1 Score: 72.8 bits (177), Expect = 1.090e-11
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  553 GFMGREDDDLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAFGKGG 735
            G   R++ D+CAICL+ YEDGD L  LPC H++H +C+ PWL+     CP+CK +     G
Sbjct:   51 GSNDRDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVSSEG 111          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9S8S5_9CRUS)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-11
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  577 DLCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAFGK 729
            D+CAICLE YE+GDSL  LPC H +HT+C+ PWL+    +CP CK + F +
Sbjct:  235 DVCAICLEEYEEGDSLRILPCSHGYHTKCVDPWLTKNKRVCPCCKRKVFAE 285          
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Match: RING-type (domain-containing protein n=8 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015IC27_RHIIW)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-11
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1
Query:  580 LCAICLETYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCK 711
            +CAICL+ +E+GD L  LPC H FH+ECI PWL+ KS+LCP+CK
Sbjct:  463 MCAICLDEFENGDQLRALPCGHEFHSECIDPWLTQKSSLCPLCK 506          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6976.15115.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type1.160e-14879.86domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Protease-associated8.420e-2231.16RING/U-box zinc finger-containing protein n=1 Tax=... [more]
RING-type1.750e-2131.16domain-containing protein n=1 Tax=Nannochloropsis ... [more]
RING-type2.340e-1254.39domain-containing protein n=1 Tax=Aphanomyces eute... [more]
RING-type3.950e-1253.70domain-containing protein n=1 Tax=Paramicrosporidi... [more]
RING-type4.910e-1247.54domain-containing protein n=1 Tax=Diceros bicornis... [more]
Hypothetical5.770e-1247.17protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 ... [more]
E31.090e-1145.90ubiquitin-protein ligase RNF13 n=1 Tax=Myotis davi... [more]
Hypothetical1.120e-1154.90protein (Fragment) n=1 Tax=Argulus foliaceus TaxID... [more]
RING-type1.380e-1163.64domain-containing protein n=8 Tax=Rhizophagus irre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6976contigE_fasciculatus_S2_contig6976:6580..7900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score434.9
Seed ortholog evalue3e-119
Seed eggNOG ortholog2880.D8LL22
Model size882
KEGG koko:K15692,ko:K19041
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-27_000830.1
EC2.3.2.27
Cds size882
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842355.0687065-CDS-E_fasciculatus_S2_contig6976:6579..72131696842355.0687065-CDS-E_fasciculatus_S2_contig6976:6579..7213Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6976 6580..7213 -
1696842355.0834734-CDS-E_fasciculatus_S2_contig6976:7652..79001696842355.0834734-CDS-E_fasciculatus_S2_contig6976:7652..7900Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6976 7653..7900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6976.15115.1prot_E_fasciculatus_S2_contig6976.15115.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6976 6580..7900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6976.15115.1

>prot_E_fasciculatus_S2_contig6976.15115.1 ID=prot_E_fasciculatus_S2_contig6976.15115.1|Name=mRNA_E_fasciculatus_S2_contig6976.15115.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=294bp
MQGIEIPAVLVSHATGERLWSNRSWIPGRQGRLRASVGAVGHIVMAARPV
GALEMLGIYLLLSVLLLAFSGVCGLVFALAFTWYQRGYRTRAMRKLKSFT
FRRRPPPPTLENQSDPAGTSGSNSGRMSGTADATGRGDSAASAAAASGRG
GDSSSGDAGIASASSLGNGTGSTASADNNNNSNNGFMGREDDDLCAICLE
TYEDGDSLTGLPCRHSFHTECIRPWLSGKSALCPMCKSEAFGKGGLFLAT
APRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRD*
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mRNA from alignment at E_fasciculatus_S2_contig6976:6580..7900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6976.15115.1 ID=mRNA_E_fasciculatus_S2_contig6976.15115.1|Name=mRNA_E_fasciculatus_S2_contig6976.15115.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6976:6580..7900- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGGCATTGAGATCCCGGCGGTGCTGGTTTCGCATGCGACGGGAGA ACGCCTCTGGAGCAATCGCTCCTGGATACCGGGCCGCCAAGGCAGGTTAC GGGCTAGCGTCGGCGCCGTGGGGCACATCGTGATGGCCGCCAGGCCCGTG GGGGCCCTGGAGATGCTCGGGATCTACCTGCTGCTGTCGGTGCTCCTGCT GGCATTTTCCGGCGTGTGTGGGTTGGTGTTTGCCCTGGCGTTTACGTGGT GAGAGGGACAGCAGTCATTTTGTTGAGATCTTTGGGCTCCCGAAAATCCC GTGTGATTTTATGTTGTGTTTTTGCAATGCGTGTGTTTGGAGATCTCGAA CACCACCGTGTTGCTGGAGCCAGTTTTTGTTTTCAAGGGGCTTTCGGCTT GCTGTACGCTTCACAAGGCGGATTATCGATGTTCGATCGCGTACGTGCCG TTTATGTTCGTCGTTGATGTCGCTGCGCTTAGTTGTCAAGCGATTTAGAT GGGATAGGCTGACTCAGCTCCGCCTTGACGGCGGTCTGGGGTTGGGTTGG CACCGCGAGGTTACATGGGCGTGAAGATTAGCTTCCATAGCTTTTCTTCA TTGTCTTTCCGCGCAATTTTTTTTTTCCGTTCGCAATTTTTTTACTCTGC CCCCACCCCGGCTCTTACAACAAAAACCACACGGCAGGTACCAACGGGGC TACCGCACTAGAGCGATGCGAAAGCTCAAGTCGTTCACGTTCCGCAGACG ACCCCCTCCTCCTACCCTTGAGAACCAGTCGGACCCCGCGGGCACTAGCG GCAGCAACAGCGGTAGGATGAGCGGAACGGCGGACGCGACTGGGCGGGGT GATTCTGCTGCTTCGGCCGCCGCCGCATCAGGAAGAGGTGGCGATTCTTC CTCCGGTGATGCGGGGATCGCGTCAGCAAGCTCCCTCGGAAACGGCACCG GTTCCACCGCCAGTGCGGACAACAACAACAACAGCAACAACGGTTTCATG GGAAGGGAGGACGACGACCTGTGCGCGATCTGCCTCGAGACCTACGAGGA CGGGGACAGCCTGACCGGCCTCCCCTGCCGCCACTCGTTCCACACGGAGT GTATCCGGCCTTGGCTGTCCGGCAAGAGCGCGCTCTGCCCCATGTGCAAG AGCGAGGCTTTCGGCAAGGGGGGGCTGTTCCTGGCGACGGCGCCGAGGCT GGAGGCGGCGTTCGCCGAGCTCGCGGCGCTGTGCACGGAGAACCTGGCCG TGTTGGGGCTGTTTTTCTTGGCCAGTGTTGCCTGCGGGGTGATCGCCGCC AAGCTGTCGCTTCGCGACTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6976:6580..7900-

>mRNA_E_fasciculatus_S2_contig6976.15115.1 ID=mRNA_E_fasciculatus_S2_contig6976.15115.1|Name=mRNA_E_fasciculatus_S2_contig6976.15115.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6976:6580..7900- (Ectocarpus fasciculatus EfasUO2)
ATGCAGGGCATTGAGATCCCGGCGGTGCTGGTTTCGCATGCGACGGGAGA
ACGCCTCTGGAGCAATCGCTCCTGGATACCGGGCCGCCAAGGCAGGTTAC
GGGCTAGCGTCGGCGCCGTGGGGCACATCGTGATGGCCGCCAGGCCCGTG
GGGGCCCTGGAGATGCTCGGGATCTACCTGCTGCTGTCGGTGCTCCTGCT
GGCATTTTCCGGCGTGTGTGGGTTGGTGTTTGCCCTGGCGTTTACGTGGT
ACCAACGGGGCTACCGCACTAGAGCGATGCGAAAGCTCAAGTCGTTCACG
TTCCGCAGACGACCCCCTCCTCCTACCCTTGAGAACCAGTCGGACCCCGC
GGGCACTAGCGGCAGCAACAGCGGTAGGATGAGCGGAACGGCGGACGCGA
CTGGGCGGGGTGATTCTGCTGCTTCGGCCGCCGCCGCATCAGGAAGAGGT
GGCGATTCTTCCTCCGGTGATGCGGGGATCGCGTCAGCAAGCTCCCTCGG
AAACGGCACCGGTTCCACCGCCAGTGCGGACAACAACAACAACAGCAACA
ACGGTTTCATGGGAAGGGAGGACGACGACCTGTGCGCGATCTGCCTCGAG
ACCTACGAGGACGGGGACAGCCTGACCGGCCTCCCCTGCCGCCACTCGTT
CCACACGGAGTGTATCCGGCCTTGGCTGTCCGGCAAGAGCGCGCTCTGCC
CCATGTGCAAGAGCGAGGCTTTCGGCAAGGGGGGGCTGTTCCTGGCGACG
GCGCCGAGGCTGGAGGCGGCGTTCGCCGAGCTCGCGGCGCTGTGCACGGA
GAACCTGGCCGTGTTGGGGCTGTTTTTCTTGGCCAGTGTTGCCTGCGGGG
TGATCGCCGCCAAGCTGTCGCTTCGCGACTGA
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