mRNA_E_fasciculatus_S2_contig697.15110.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig697.15110.1
Unique NamemRNA_E_fasciculatus_S2_contig697.15110.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig697.15110.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig697contigE_fasciculatus_S2_contig697:18433..19042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size610
Hectar predicted targeting categoryother localisation
Exons1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.3771214-UTR-E_fasciculatus_S2_contig697:18432..185921696842354.3771214-UTR-E_fasciculatus_S2_contig697:18432..18592Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig697 18433..18592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842354.3896525-CDS-E_fasciculatus_S2_contig697:18592..190421696842354.3896525-CDS-E_fasciculatus_S2_contig697:18592..19042Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig697 18593..19042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig697.15110.1prot_E_fasciculatus_S2_contig697.15110.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig697 18593..19042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig697.15110.1

>prot_E_fasciculatus_S2_contig697.15110.1 ID=prot_E_fasciculatus_S2_contig697.15110.1|Name=mRNA_E_fasciculatus_S2_contig697.15110.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=150bp
MPSDCLIECSTVQLFTLQNSGMKSMRQRQVLPPKHTTCGHELDTPQILRY
GGRQWGIDCVEKIIKWHNASIPLPPGHRHKTLLAIRVPPCELEGYPCYCT
IACFFPPEARKKHCGTTRYHYGGVCLHELGGREVGQHLLRTPRIHSPMLS
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mRNA from alignment at E_fasciculatus_S2_contig697:18433..19042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig697.15110.1 ID=mRNA_E_fasciculatus_S2_contig697.15110.1|Name=mRNA_E_fasciculatus_S2_contig697.15110.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=610bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig697:18433..19042+ (Ectocarpus fasciculatus EfasUO2)
GAGCGAACACCCCTCCCTCTTCCACCTCGGCCTGCGCCACGTATTCCAAG
CACTCGTCCATGTTGGTAGCCGTGGGGTCCTGGAAGAAAAACGACAGAAA
AAGAATGACGGAACGTGGTTTGCACGACGTTCGTAGCCGAACGACAATCT
GCACCAATGGATGCCCTCAGACTGCTTGATTGAATGCAGTACAGTACAAC
TGTTTACCCTTCAGAACTCGGGGATGAAATCGATGAGGCAACGGCAAGTA
CTTCCACCCAAACACACCACTTGCGGGCATGAACTCGACACACCGCAAAT
ATTACGATATGGTGGCCGTCAATGGGGCATAGATTGCGTCGAAAAAATAA
TAAAGTGGCATAATGCGTCTATTCCGTTGCCGCCTGGCCACCGACACAAG
ACGCTACTCGCAATACGTGTACCACCTTGTGAGCTCGAGGGATACCCCTG
CTACTGTACCATTGCGTGCTTCTTCCCTCCGGAGGCAAGGAAGAAACACT
GCGGAACGACGCGCTATCATTACGGTGGTGTATGCCTGCATGAACTCGGA
GGTAGAGAGGTTGGTCAACATCTTCTTCGTACCCCGAGGATCCATTCGCC
CATGCTCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig697:18433..19042+

>mRNA_E_fasciculatus_S2_contig697.15110.1 ID=mRNA_E_fasciculatus_S2_contig697.15110.1|Name=mRNA_E_fasciculatus_S2_contig697.15110.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=450bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig697:18433..19042+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCTCAGACTGCTTGATTGAATGCAGTACAGTACAACTGTTTACCCT
TCAGAACTCGGGGATGAAATCGATGAGGCAACGGCAAGTACTTCCACCCA
AACACACCACTTGCGGGCATGAACTCGACACACCGCAAATATTACGATAT
GGTGGCCGTCAATGGGGCATAGATTGCGTCGAAAAAATAATAAAGTGGCA
TAATGCGTCTATTCCGTTGCCGCCTGGCCACCGACACAAGACGCTACTCG
CAATACGTGTACCACCTTGTGAGCTCGAGGGATACCCCTGCTACTGTACC
ATTGCGTGCTTCTTCCCTCCGGAGGCAAGGAAGAAACACTGCGGAACGAC
GCGCTATCATTACGGTGGTGTATGCCTGCATGAACTCGGAGGTAGAGAGG
TTGGTCAACATCTTCTTCGTACCCCGAGGATCCATTCGCCCATGCTCAGC
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