mRNA_E_fasciculatus_S2_contig692.15058.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig692.15058.1
Unique NamemRNA_E_fasciculatus_S2_contig692.15058.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig692.15058.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX67_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 2.690e-78
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1 
Query:    1 ADGRFSEDIVLEHLKRKLLRGQKLLRFPPRKALIGSKPYLTLLSIDEHNLYYQGKDRVSLPEGSRRGIMLYNLKFVVKGKSTATLKKSARRLSDDACFSLAAEGKVLNFAVPSTVPDDGKSGQ 369
            ADGRFSEDIVLEHLKRKLLRGQKLLRFPPRKALIGSKPYLTLLSID+HNLYYQGKDRVSLPEGSRRGIMLYNLKFVVKGKSTATLKKSARRLSDDACFSLAAEGKVLNFAVPSTVPDDGKSGQ
Sbjct:  102 ADGRFSEDIVLEHLKRKLLRGQKLLRFPPRKALIGSKPYLTLLSIDDHNLYYQGKDRVSLPEGSRRGIMLYNLKFVVKGKSTATLKKSARRLSDDACFSLAAEGKVLNFAVPSTVPDDGKSGQ 224
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig692.15058.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.690e-7899.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig692contigE_fasciculatus_S2_contig692:20937..24077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size601
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionPeptidase C19, ubiquitin-specific peptidase, DUSP domain
Ec32 orthologEc-10_004470.1
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842349.4940841-CDS-E_fasciculatus_S2_contig692:20936..210021696842349.4940841-CDS-E_fasciculatus_S2_contig692:20936..21002Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 20937..21002 +
1696842349.5064995-CDS-E_fasciculatus_S2_contig692:21838..219931696842349.5064995-CDS-E_fasciculatus_S2_contig692:21838..21993Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 21839..21993 +
1696842349.5169313-CDS-E_fasciculatus_S2_contig692:23018..231661696842349.5169313-CDS-E_fasciculatus_S2_contig692:23018..23166Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 23019..23166 +
1696842349.5272112-CDS-E_fasciculatus_S2_contig692:23846..240771696842349.5272112-CDS-E_fasciculatus_S2_contig692:23846..24077Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig692 23847..24077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig692.15058.1prot_E_fasciculatus_S2_contig692.15058.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig692 20937..24077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig692.15058.1

>prot_E_fasciculatus_S2_contig692.15058.1 ID=prot_E_fasciculatus_S2_contig692.15058.1|Name=mRNA_E_fasciculatus_S2_contig692.15058.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=200bp
ADGRFSEDIVLEHLKRKLLRGQKLLRFPPRKALIGSKPYLTLLSIDEHNL
YYQGKDRVSLPEGSRRGIMLYNLKFVVKGKSTATLKKSARRLSDDACFSL
AAEGKVLNFAVPSTVPDDGKSGQRCDLLVWGLQSLIREMQGSQVYVDKDG
AVKRRVKPKDMLTTVRGQQRQQQHPPPPRQQPQQRQQQQQQHAKTSVLS*
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mRNA from alignment at E_fasciculatus_S2_contig692:20937..24077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig692.15058.1 ID=mRNA_E_fasciculatus_S2_contig692.15058.1|Name=mRNA_E_fasciculatus_S2_contig692.15058.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3141bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig692:20937..24077+ (Ectocarpus fasciculatus EfasUO2)
GCGGACGGGCGTTTCAGCGAAGACATCGTGCTCGAGCACCTCAAGCGCAA
GCTCCTGCGGGGACAGGTGACCACGCCTGCCCACGCATATAATAGCGATG
GCAGTGGTGATGGAAACACAAATCAGATTGAAGCACAGAGGGTGGATGAC
AGCACGAAGGTCATTCCTAAGATTATGTTGATGTGTATGTCTTGTAGGAA
GACGGGTGAGAGAGAGAGGTGGGGTAAAATCAGCGCAGTAAACCTGGTAT
TCACAGCAACGGCGAAGGAAGCGATACCAGGAGAGAGACTGCGGGGAAAG
AGAAAAAAAAAGGTAGATGACGTTGCGCTTTGTCCTTCGCCGTTTGAGGC
GTCGGGCACACGTCACGGTCCAACGGCAAGGCAATCTATTTTGAGACGGC
GCATTCGTCAGGCACGTGCTCAGTCGGGGTTGTCTTCCTATAAGGACAAC
ACAAACGAATTTCTTCTACATCCCTTGGGGTAGGGCCGTAGCTCCAGGGT
GGACGAAACGTTCAAGAAGAAGGCAGAGCTTCAAAGGTGCCATCATTGGA
ATGTCCTTGGGTGACTGGAGCCTTCGTCACCACCCACCAACATCTCACCC
TCCCTGCCGCTCCGGTTTGATTCGTGTAATAGATGACCTCTTGTCGTCGC
AGGATCATTTGACCGGCCGCGAGTCAATGATGTTGTGATCGTAGAAAGCA
ACGGTTTCACGCGGCGTCATTGCTCGGAACACCTGTACCGCCTCTCATCC
CGTTCCCTGTGAAAGCGAATTTCACGGGCACGATATTTAAAAAAAAAAAA
AAATGTTGAAACCGTTGCTGCTGCTGCTCCACTGCCGTTTTGTCCATCGA
AAGCATCATCCCCCCCTTTTTTTTTGTTCTACCCAAACACACGTGCTCGC
AGAAACTGCTGAGGTTCCCGCCCAGAAAGGCTCTGATCGGGAGCAAGCCT
TACCTGACCCTCCTCTCCATCGATGAGCACAACCTGTACTACCAGGGGAA
GGACCGTGTCAGCCTTCCTGAAGGCTCCCGGCGCGGCATCATGCTCTACA
ACCTCAAGTGAGGGGCGGGTTGGGGTTGGACGGGGACGGGGCGACACAGT
GAATATCAAGCATGATGAGTTTGTTTCAATGCCTGCCTAGACTCTCACGG
TTGAACAGAGTGGCGCCAGGGGGGGCACACTATCCCACTGTATGGTATTA
TGTGGCCAAGGCGATGTACTACCGGAAACTAGCCTGCATCCCTGCAAAGG
CGCGACTCGACGTCCTTGGTTCTTGTTGAAACGAACAGGAAGTGGTTTGA
CCGAGCGCGCGCAATGACCGGAGTAAGGTGACTCGGTGAAGCGCCGCACA
TGCGATGAGATGCTCCCTACCCCGCCAGTCGTTTAAGATGGAAAAAGACG
TCGCAAACCAGATTAGCCTTCACGAGTGAATTCGACGCTCCAAGTGGGCC
GGCTCTCATTTCAGTGAATCAGTATGACACGTCTGGCATTACAACCGTTT
CTGTAATCACACCCCTTTTTTCATGTTCACAGCAACATTTTCTATTTCGC
AACCGTCGGAAACCACGTGGTAAGCGACACTTGGGGTTGGCCCTAGTCGG
ACAATAGTGCTAAGTGACAACGAGGGGGATTTGTTCATTCGGAGTGAACC
TGCAGCAGAAGCAACATGCGAAACACCCGACACCCTTTCTTCGAACGAAA
CTTGGCGCCGCCTCCAGGGAAAGTTTTTTTTACATGGCTGGCTGGGGTTG
CTCTACTGGTCTGTCGTTCTCTTTTGGAGGTGCTGCCTCGCATGAAATGA
AGGTTCAGCCGCGCTCTCGAGCTTGGCCCGATGAGAGGTTTCCTACACCG
GTTGTCTTCGGGAATGACAGCATGAAAACAAAAATTGCACACCTTTCAAG
AACTGGGGGAGCTTGAACGTACACGTCACAGACAGCCTGTGAGTGAAACC
TTGCGGTCAGGACACCCCACTACTGTTCAACGACATTGATGAGCTTCAAA
CATGCAAGAGTCTAAAACGTCGCGAGTGCTGATTCACTCCCGTTGCTCGA
CAAATACATGTGGTGTGTGGCGTGTGAAAAAGGTTCGTGGTGAAGGGCAA
GTCAACCGCGACCCTCAAGAAGAGCGCCCGCCGGCTGAGCGACGATGCCT
GCTTCAGCCTTGCGGCGGAGGGCAAGGTGCTCAACTTCGCGGTCCCCTCC
ACCGTTCCCGATGACGGCAAGAGCGGCCAGGTATGTATCTGCAGCAGTTC
ATCAAGCTTGGAGGGTAGGGTTGGGGATAGGGATATGAAACTCTCTCCTC
TCTGAGTATATCCCCGAGAAGGCGGGCCATCGACATGGAATGCCTTTGCA
CTACAATTTATGTACAGCAATAGATGCCGTCTCGTTTCAACCCTATGCCC
TGCCGTCACGGTTACGCCTTACCGCCCCCTTCGGGAGTGCTCTGATTTCA
ATCCACGCCTCGTACTAAATAATTGTGGGTGAAGTGGAGAGTACATGGTC
GTGATACCGGACAAACGTATGAAGTTGGATCCAATCCTCGCGTGGTATGT
AGTCTCCATTGGCTCCCCCACTTGAGGATACACTGAACGAGCCTCTCGGT
ATTCTTTGAGCGTATCCAAGTGGTGACTCGTTCTGAGCTACCAGGGAGAA
AAACGAAGCACGACCCTCCTCTTTGTGTCTCCTTCCTGACGGAGTTATGC
CGTATTCTGCCTATTGGTCGCCGAGGTTAGGCACGATACAGGCTGATGTC
TGGGGAACGTCACTTTGGTACAACACCTACCCCCCCCTTTTGGCCATCCT
TCCTCGCTCTGCGAGTACCCGCTTAGTTAGCTGGAAACCACTACTAATAC
AGAGCCCCACCCCCGTCTTCCTCCCTCCTCGTGCTCGAATTTGTCCTTCG
AAATAAACAGCGCTGTGATCTGTTGGTGTGGGGCCTGCAGAGCCTGATCC
GCGAGATGCAGGGGTCTCAGGTGTACGTCGACAAGGACGGAGCCGTGAAG
CGCCGCGTCAAGCCAAAGGACATGCTCACAACCGTACGCGGCCAGCAGCG
ACAGCAGCAGCATCCTCCTCCTCCGCGGCAACAACCACAACAACGACAAC
AACAACAGCAGCAGCACGCCAAAACTTCGGTGCTGTCGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig692:20937..24077+

>mRNA_E_fasciculatus_S2_contig692.15058.1 ID=mRNA_E_fasciculatus_S2_contig692.15058.1|Name=mRNA_E_fasciculatus_S2_contig692.15058.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=600bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig692:20937..24077+ (Ectocarpus fasciculatus EfasUO2)
GCGGACGGGCGTTTCAGCGAAGACATCGTGCTCGAGCACCTCAAGCGCAA
GCTCCTGCGGGGACAGAAACTGCTGAGGTTCCCGCCCAGAAAGGCTCTGA
TCGGGAGCAAGCCTTACCTGACCCTCCTCTCCATCGATGAGCACAACCTG
TACTACCAGGGGAAGGACCGTGTCAGCCTTCCTGAAGGCTCCCGGCGCGG
CATCATGCTCTACAACCTCAAGTTCGTGGTGAAGGGCAAGTCAACCGCGA
CCCTCAAGAAGAGCGCCCGCCGGCTGAGCGACGATGCCTGCTTCAGCCTT
GCGGCGGAGGGCAAGGTGCTCAACTTCGCGGTCCCCTCCACCGTTCCCGA
TGACGGCAAGAGCGGCCAGCGCTGTGATCTGTTGGTGTGGGGCCTGCAGA
GCCTGATCCGCGAGATGCAGGGGTCTCAGGTGTACGTCGACAAGGACGGA
GCCGTGAAGCGCCGCGTCAAGCCAAAGGACATGCTCACAACCGTACGCGG
CCAGCAGCGACAGCAGCAGCATCCTCCTCCTCCGCGGCAACAACCACAAC
AACGACAACAACAACAGCAGCAGCACGCCAAAACTTCGGTGCTGTCGTGA
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