mRNA_E_fasciculatus_S2_contig6905.15043.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6905.15043.1
Unique NamemRNA_E_fasciculatus_S2_contig6905.15043.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.200e-67
Identity = 103/118 (87.29%), Postives = 108/118 (91.53%), Query Frame = 1
Query:    1 MSNPVTQPDIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRTVCRDIAALGRLDLLVSAREQHECAWDEDTCSYASENGHGDVLRWAFANG 354
            M NP+ QPDIVFRL EFVGGEQY+FFAGVSRTWRDAWEG PTTTRA TADT +PQLSQSF+CGLAPR TVCRDIAALGRLDLLVSAREQHEC WDE+TCS ASENGH DVLRWAFANG
Sbjct:    1 MPNPLMQPDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCASENGHADVLRWAFANG 118          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 5.870e-59
Identity = 93/103 (90.29%), Postives = 97/103 (94.17%), Query Frame = 1
Query:   46 EFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRTVCRDIAALGRLDLLVSAREQHECAWDEDTCSYASENGHGDVLRWAFANG 354
            EFVGGEQYLFFAGVSRTWRDAWEG PTTTRAVTADT +PQLSQSFECGLA R TVC+DIAALGRLDLLVSARE++EC WDEDTCSYASENGH DVLRWAFANG
Sbjct:    2 EFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYASENGHADVLRWAFANG 104          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.390e-24
Identity = 54/91 (59.34%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   25 DIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRTVCRDIAALGRLDLLVSAREQHECAWDEDTC 297
            DIV  + EFV   QYLFFA VSR WRD W   PT T+A+TADT++PQLS SFECGL     VC  +A LGRLDLL  AR    C W+E+TC
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG-CQWNENTC 97          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.420e-23
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   19 QPDIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRTVCRDIAALGRLDLLVSAREQHECAWDEDTC 297
            Q D+   L EFV  EQ+LFFAGV R W++AW   P TTRAVT DTT+ QLSQ+F+CGL+    VC  +A LGRLDLL  AR +H CAW+E TC
Sbjct:    8 QSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCAR-RHGCAWNEVTC 99          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.300e-22
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   40 LKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRTVCRDIAALGRLDLLVSAREQHECAWDEDTC 297
            L EFV   Q+LFFA VSR WRD W   PT T+A+TADT++PQLS SFECGL     VC  +A LGRLDLL  AR    C W+E+TC
Sbjct:   31 LAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMG-CPWNENTC 115          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.820e-22
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   25 DIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRTVCRDIAALGRLDLLVSAREQHECAWDEDTC 297
            DIV  + EFV   QYLFFA VSR WRD W   PT T+A+TADT++ QLS SFECGL     VC  +A LGRLDLL  AR    C W+E+TC
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMG-CPWNENTC 99          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.440e-20
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 MSNPV-TQPDIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRT-VCRDIAALGRLDLLVSAREQHECAWDEDTC 297
            M NP     D++    EFV  +Q+LFFA VSR WR AW G PT+TRA+T DT+  QL  S +CGL+P  T VC  IA+LGRLDLL +AR      WD+ TC
Sbjct:    1 MGNPFQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALG-FRWDKMTC 100          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-11
Identity = 50/102 (49.02%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   13 VTQPDIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLAPRRTV--CRDIAALGRLDLLVSAREQHECAWDEDTCSYASE 312
            +T  DIV  L +FV  +Q+LFFA VSR+WRDAW    T T  VT  TT  QL  SF CGLA R  V  C   A  G LDLL  A EQ  C W     + A+E
Sbjct:   20 MTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLA-RDGVDWCLTTARAGNLDLLRWATEQG-CPWTRSLSAAAAE 119          
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.200e-11
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   25 DIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTADTTMPQLSQSFECGLA-PRRTVCRDIAALGRLDLLVSAREQHECAWDEDTCSYAS 309
            D++  +  FV  +Q+LFFA VSR WR+AW   P  T  VT D+++ QL  SFE GL   R  +C  IA LG L+LL SAR    CAW+  T S A+
Sbjct:   62 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSG-CAWNGLTFSEAA 156          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6905.15043.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized1.200e-6787.29protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.870e-5990.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.390e-2459.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.420e-2359.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.300e-2259.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.820e-2258.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.440e-2052.48protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9... [more]
Uncharacterized1.100e-1149.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.200e-1146.88protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6905contigE_fasciculatus_S2_contig6905:4565..5419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score76.6
Seed ortholog evalue2e-11
Seed eggNOG ortholog2880.D7FJY0
Model size855
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2AMK4@1,2RZCC@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-15_004500.1
Cds size855
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842348.1479797-CDS-E_fasciculatus_S2_contig6905:4564..54191696842348.1479797-CDS-E_fasciculatus_S2_contig6905:4564..5419Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6905 4565..5419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6905.15043.1prot_E_fasciculatus_S2_contig6905.15043.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6905 4565..5419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6905.15043.1

>prot_E_fasciculatus_S2_contig6905.15043.1 ID=prot_E_fasciculatus_S2_contig6905.15043.1|Name=mRNA_E_fasciculatus_S2_contig6905.15043.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=285bp
MSNPVTQPDIVFRLKEFVGGEQYLFFAGVSRTWRDAWEGHPTTTRAVTAD
TTMPQLSQSFECGLAPRRTVCRDIAALGRLDLLVSAREQHECAWDEDTCS
YASENGHGDVLRWAFANGCPWDADTCTMAARHGHLGVLKWARSNGCAWNS
ETSKLAAVGGHFAVIQYLHEHGCSMDADTCYGAARGGHLKILMYLRANGC
EWDQWTTAAAAAQGYLTILTWSHQNGCVMDEYVSLLAAQEGRLDCIEYAR
ANGVALYAECLQAARDGDHANMVNWLVANGCPEP*
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mRNA from alignment at E_fasciculatus_S2_contig6905:4565..5419-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6905.15043.1 ID=mRNA_E_fasciculatus_S2_contig6905.15043.1|Name=mRNA_E_fasciculatus_S2_contig6905.15043.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6905:4565..5419- (Ectocarpus fasciculatus EfasUO2)
ATGTCCAACCCCGTCACGCAACCGGACATCGTCTTCCGCCTGAAGGAGTT CGTGGGTGGCGAGCAGTACCTCTTCTTCGCGGGGGTGTCGCGGACCTGGA GGGACGCGTGGGAGGGACACCCGACGACCACGCGTGCCGTCACCGCCGAC ACGACGATGCCCCAGCTGTCGCAGAGCTTCGAGTGCGGCCTGGCTCCGCG GAGAACGGTGTGCCGAGACATCGCTGCCCTGGGAAGGCTCGACCTTCTCG TGTCCGCTCGCGAACAACACGAGTGCGCCTGGGACGAGGACACGTGCTCG TACGCGTCCGAAAACGGACACGGCGACGTGCTTCGATGGGCCTTCGCGAA CGGTTGCCCGTGGGATGCGGATACCTGCACAATGGCTGCTCGGCACGGTC ACCTTGGTGTACTCAAATGGGCCCGCAGCAACGGCTGCGCCTGGAACAGC GAAACTTCCAAGCTTGCTGCCGTGGGGGGGCATTTCGCAGTCATACAGTA TCTGCACGAGCACGGTTGCTCGATGGATGCTGACACTTGCTACGGAGCAG CCCGTGGAGGACACCTGAAAATCCTCATGTATTTGCGTGCCAATGGTTGT GAGTGGGATCAATGGACAACTGCTGCGGCGGCTGCCCAGGGATACCTAAC TATTCTTACTTGGTCTCACCAAAATGGATGCGTCATGGACGAGTATGTGA GTTTGTTAGCAGCCCAAGAAGGTCGCCTAGATTGCATTGAATATGCGCGG GCGAACGGTGTCGCGTTGTATGCAGAATGCCTGCAAGCCGCCAGGGACGG CGACCATGCTAACATGGTGAATTGGTTGGTAGCAAACGGTTGTCCCGAAC CCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6905:4565..5419-

>mRNA_E_fasciculatus_S2_contig6905.15043.1 ID=mRNA_E_fasciculatus_S2_contig6905.15043.1|Name=mRNA_E_fasciculatus_S2_contig6905.15043.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6905:4565..5419- (Ectocarpus fasciculatus EfasUO2)
ATGTCCAACCCCGTCACGCAACCGGACATCGTCTTCCGCCTGAAGGAGTT
CGTGGGTGGCGAGCAGTACCTCTTCTTCGCGGGGGTGTCGCGGACCTGGA
GGGACGCGTGGGAGGGACACCCGACGACCACGCGTGCCGTCACCGCCGAC
ACGACGATGCCCCAGCTGTCGCAGAGCTTCGAGTGCGGCCTGGCTCCGCG
GAGAACGGTGTGCCGAGACATCGCTGCCCTGGGAAGGCTCGACCTTCTCG
TGTCCGCTCGCGAACAACACGAGTGCGCCTGGGACGAGGACACGTGCTCG
TACGCGTCCGAAAACGGACACGGCGACGTGCTTCGATGGGCCTTCGCGAA
CGGTTGCCCGTGGGATGCGGATACCTGCACAATGGCTGCTCGGCACGGTC
ACCTTGGTGTACTCAAATGGGCCCGCAGCAACGGCTGCGCCTGGAACAGC
GAAACTTCCAAGCTTGCTGCCGTGGGGGGGCATTTCGCAGTCATACAGTA
TCTGCACGAGCACGGTTGCTCGATGGATGCTGACACTTGCTACGGAGCAG
CCCGTGGAGGACACCTGAAAATCCTCATGTATTTGCGTGCCAATGGTTGT
GAGTGGGATCAATGGACAACTGCTGCGGCGGCTGCCCAGGGATACCTAAC
TATTCTTACTTGGTCTCACCAAAATGGATGCGTCATGGACGAGTATGTGA
GTTTGTTAGCAGCCCAAGAAGGTCGCCTAGATTGCATTGAATATGCGCGG
GCGAACGGTGTCGCGTTGTATGCAGAATGCCTGCAAGCCGCCAGGGACGG
CGACCATGCTAACATGGTGAATTGGTTGGTAGCAAACGGTTGTCCCGAAC
CCTAG
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