mRNA_E_fasciculatus_S2_contig6902.15039.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig6902.15039.1
Unique NamemRNA_E_fasciculatus_S2_contig6902.15039.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig6902.15039.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig6902contigE_fasciculatus_S2_contig6902:16..4291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size293
Hectar predicted targeting categoryother localisation
Exons4
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842347.8522606-CDS-E_fasciculatus_S2_contig6902:15..881696842347.8522606-CDS-E_fasciculatus_S2_contig6902:15..88Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6902 16..88 +
1696842347.8637435-CDS-E_fasciculatus_S2_contig6902:877..9491696842347.8637435-CDS-E_fasciculatus_S2_contig6902:877..949Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6902 878..949 +
1696842347.8743756-CDS-E_fasciculatus_S2_contig6902:2046..21481696842347.8743756-CDS-E_fasciculatus_S2_contig6902:2046..2148Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6902 2047..2148 +
1696842347.8866768-CDS-E_fasciculatus_S2_contig6902:4245..42891696842347.8866768-CDS-E_fasciculatus_S2_contig6902:4245..4289Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig6902 4246..4289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig6902.15039.1prot_E_fasciculatus_S2_contig6902.15039.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig6902 16..4289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig6902.15039.1

>prot_E_fasciculatus_S2_contig6902.15039.1 ID=prot_E_fasciculatus_S2_contig6902.15039.1|Name=mRNA_E_fasciculatus_S2_contig6902.15039.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=97bp
GSIPTWLGFLSTLEKLRLSGNQLVGHVPKELGDLENLQWLSLQNNHLTGA
IPTELASLSALSSFGYGNNPPQSIWRRRKQLTGGPAKREGLDSWRAR
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mRNA from alignment at E_fasciculatus_S2_contig6902:16..4291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig6902.15039.1 ID=mRNA_E_fasciculatus_S2_contig6902.15039.1|Name=mRNA_E_fasciculatus_S2_contig6902.15039.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4276bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6902:16..4291+ (Ectocarpus fasciculatus EfasUO2)
GGCTCCATCCCTACGTGGCTGGGATTTCTAAGCACGTTGGAAAAACTTCG
GCTCAGCGGCAACCAACTTGTCGGTGAGATGAACGTGTCAACTGGGTTGT
CGAATCCAGTTTTTGTTCGACGGCGGCCCTAGCATGACATGTCCTACGAT
CACGGAATGGCGTCATTTCATGTGGTGTTTGCTGGAGTATGCGGGATTAT
ACAAATCGTTCATGCCACGGTGGAGTCGTGTATCAGGATGGCAATCGGCC
CTACCAAATCAGCCATCTGGCCTATGATTGTCCATGATGGCTATTTTCTC
CGAGTATGCAGAATTGGACAAATGGAGACCGTTCCATTCGACGTAGAGAT
TTTTCCGAACGTCGGTGCGGGGAACATTTCTCAGCTACCCTGTTAAAAGG
CACCCAAACAATACACACACCGAATATGCTCTTTTCACGAGCATAGGCGG
TGCTAACAGCGTGCACAGGGTGTCAAGAAAGAGTGATCCACAGACAACGT
GTTGGAGGTGTCTTCAATTTTGCTTGCCTTGTTCCAGCTGTGCATATTTT
TCAACCAGCAGCGCGTGGATGTGCACTGCAACGATATCGACGCGGACATT
GCTATCAAACGTTTCTGCATAAATCTCGCGACACTTACAGTCAAAGCCAT
CTAACTAACCGTGCTCGCATAACAGTTGGTTGCATGGCGTTTTTTCCTAC
GTTTGTCTGTAGACAATTCTCATGGTGTCAATTGTTTCAACCACGGAGTA
CCTGACATGCCAAATATATAAGTTCGTACCCTATACAACCTTGGCTGCAA
CATCCTTTGGCCGTCATGCGATCATTATATGCTCGATATTGCTTCGGTGA
TGCAAATTTCAGGACACGTTCCCAAGGAGCTAGGCGACTTGGAGAACCTG
CAGTGGCTTTCTTTGCAAAACAACCACCTCACAGGTACGGGTAGTGCAAC
ACAGGAAGCCTGTTTTTCCGCGATACACATGTCTTCACTGTTAGAGAGAG
TAGTATCGGCACGCACGGACGCTATTCTCACGCTTTGGGCGAGGTTGCTG
CACAAACGTCTTTTCACGCTGGGCTGATTCACCGTAACAACTAATAGTTT
TAGAGCCCAGCTTTGGGGGGGTATAGACCTAGACTAGCGGTAGGTAAATA
CACAATCGTAGGGTAAGTGGCACTCAAATTTGAAACGTGTCCACCTGCAA
CATTCTGTCATGCCCACGCATAGGGTTGGAGCTATCCCAGAACTTAGCGT
GGTAGTCCCTTCGTCCTTTTACCGTGTGCTGGTTGATATTGAGCTTTAGC
TATGTGAGTTGGGTGGAAGCGCCCCGTCAATTGGCGATCAATCCTGCGCA
GGTAGCCAAACATGAAGTCGGAAATCGGCGAGCTGAGGTCCAGGTACGGC
CTCTGAGCATTGCAGTATGGCGTCGCTTCACCCGTACTCGAGATTGAAAA
ATGCCGTAGAATGGAAGGCACAGGTCTCGATGCTTCCGCTCGGTTCCCGC
AACCACCCAGCACACGCCTCACCTTGCTTTTTGCACCATCTTCCCAAGGG
ATAGATCAATCAGCACCTCCTATGCATTCAAAAGGTTGCATTTTTTCCCA
CGGCATGCCGGCCACCCTTGTGTTCAGCTTTCCAATGCGTTACCGTAGCG
CACGTGGAGGTGACCCATCTCCCCCGCGCCAACTGTACCAACTGTACCGA
TACCTGTTTTTCTTCCACGAGCACTCTCCGACCTCCCGTGGACACCCGGA
ACAGGTTTAGACTAGTTAGGTGTGCATTGGCCCCAGCCCCTTTGCTGGTC
TGCTGATGCCGCGTGGAATGACGGACAGTGGAGCATTACCCCCTGTCAGG
AACATTTTGGCCTTCTACATCCTCGCGATCCACCAACGTACCTCTTGAAA
CCGTTACCGGGCTCCCTTGCACGCCCGCCCATAGCACAGGGCTGGCCAAG
GTCGCAGATCTATTTTACGGTGACTTTTACAAACAACGTTTGCCCCTTCT
CGTTCGAACCACCAAAACGCTGGCTGTGCAGGAGCCATCCCGACGGAGCT
GGCAAGCTTGAGTGCTCTTTCGAGTTTTGGGTATGGAAACAACCCGCCAC
AATCCATCTGGCGCCGTCGTAAGCAACTTACTGGTGAGAAAGCACACATG
AATAACATAAGTTTGACAATCGTTATGGCTGGGACAGACGTGGGGGACAC
CGCCTTGTACACACGTACTGAACAACACGTCCAAATCAGGAACCTGAAAA
CAAATGAGTCAAACTTAGTAGTCAGCGATGCGCTGTCAGCTCCGGTTCTT
AGATGGCACCAACAGTGCCCATTGTAATAGGGACATGACCCCCAGCTTAC
CAACAAGTACGCAATACTTTACATGTTCCACCAGACTGAATTGGGACGGA
ATTTGCTACAATTGGACACAGGGACTGGTTCTGTCCCACAGGAAAGCACG
CTGTGTATATAGGCAGGCCCTTCCCCGCGTCTGGTATCTTGGCATTAGTT
CCATCCAATCCCTGGGGATTACGTTGAACCAATGTTATATTTTGGCAATT
GCCAACTCAACCACTTCGGCGAATGGTCGAAACCAAGTTTACCCAACAAC
GGCAACGTTCACCCCAAGTTGAAGGCATATTAACCCTCAACTATATCTCA
TTTTTATTCGAGCGAAGCGAGATTTCTAATCTCGCCTAAGTTCTCACCGC
AATGTAGGGGCTGATGCAGGAAAAAATGTTTCTGCCCGTCTCTTCGCTTA
ATCTAGGTTTTAGACTACATGACTTGATTTTAGACTACAGGGGTCACCAG
GGCGCCCGTTTTTTTTTCGGAGTACACAGCAGCAGCGGGGAATGCAGCAG
AGAACACACGCACAGCCGACAACGTACGCATAACGGGCGGCACACACGCG
CCACGGGCGATGGCATCTGGGCTCGATGCCGCTGGACTCTCGGTGGTGAT
GGGTCTATGTATTGCGCAGTCATGTGTGTTTGTTTAGCAGCCGCGTTCAA
CTCAGCGAAAAATGAGGATAGCACCACAGTAGCTCTCGAAATCCAGGGCG
CCGATCGGCATCGCGCCACTTCGAGCGTGTGCGCCATTGTGGTGTCTCGG
AGCGTGACAGTTGTCTTGGGCGTGGGTGCTGTATATGGCGAGAGCATCGT
GGCGATGTGAAATGCGGTTTTGGGCTTTTCTCCTGGTGGTGCGGCCTGAC
TCGGGCAAAGAATACCAGCTGAATACAATCGATCGGATTCATTCCACGCC
GCCATGAAACTCTTCCCACACACAGCAACCATGCCCAACACAACTGTCAC
CCCCCGAGATATCGCAATGAAGCACACGCTCGGAGTGGTGCCATGATAGT
TGGTGCGCTAGGTGACGAGAACTGAGTTGTGTCCTGTGCTGTTTCGCTGG
CAGTTGGAAAACACCGAACAAGAAAGAGAGAACAGGGGGTTCGGCAATAG
TATGCGGGGGGTATGTAGGGCCACGAAAGAAGCAGGATATGGACGGGAGG
CGGGGGGGAGGGGTAACCGGTAGGTGAAACGTCGCCACAGCTCTCACACA
CCAGCGCACAGCAGATGTAGTATCGAGTGTGTGGTGTTGGCACTCTGTTT
CCGCCCGCCCGCGGTCGCACACACGTCTGGTGATAGTTATATCTATCAGC
TGTCGCTCGTTTTTGCGATATTTAGCGACAGCTACTATATCTTCCGCCCG
TCACGACTTGGTATTAACCGGCCCCTTGCCTCAGGAAAGGCCAATATATC
ATATTCTGCGACGTTTTTCGATTATCCCACCCCTCTTCGACATCGCAACT
TCATTGTGTTTCAAACCAAAACCGTTAAGACCTACCAGTGCGTCTCTCAC
AATGCGAAGTGATATCGCGTCGGCTCACCCTTGTTTGCCCCCCATTTGGG
CATGTTTCGAATAATCCTTACAACAACAGAAACATCCTTCGTCGCTGTAG
GCAAAATTTACGTTTGAGCTGCATGAGCTGCCCCAGGTTTTGGTTAAGAG
GCGTTTTTGTCAACGTTGCCCTCTGTTACGTTTTTTGGGGACGTTATATC
ATGATGAATTGTTCCTATCATGACCAAGGCCGCAAGGGGAAGGCATTGGC
TTGTGCTGACCTCTTTCGTCAGGTGTAGATCTCCTATGGCGATTCCCGAC
TCGTGCACCATCCCTACGACCATGGTTTCGCTCGCATGAACCTCTGCTTA
TAGTTTTCTATTGACCTCATTCTCCTGCAGGAGGACCGGCGAAGCGCGAG
GGACTAGATTCGTGGAGGGCACGAAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig6902:16..4291+

>mRNA_E_fasciculatus_S2_contig6902.15039.1 ID=mRNA_E_fasciculatus_S2_contig6902.15039.1|Name=mRNA_E_fasciculatus_S2_contig6902.15039.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=291bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig6902:16..4291+ (Ectocarpus fasciculatus EfasUO2)
GGCTCCATCCCTACGTGGCTGGGATTTCTAAGCACGTTGGAAAAACTTCG
GCTCAGCGGCAACCAACTTGTCGGACACGTTCCCAAGGAGCTAGGCGACT
TGGAGAACCTGCAGTGGCTTTCTTTGCAAAACAACCACCTCACAGGAGCC
ATCCCGACGGAGCTGGCAAGCTTGAGTGCTCTTTCGAGTTTTGGGTATGG
AAACAACCCGCCACAATCCATCTGGCGCCGTCGTAAGCAACTTACTGGAG
GACCGGCGAAGCGCGAGGGACTAGATTCGTGGAGGGCACGA
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