mRNA_E_fasciculatus_S2_contig689.15017.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig689.15017.1
Unique NamemRNA_E_fasciculatus_S2_contig689.15017.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig689.15017.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ7_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 3.830e-76
Identity = 156/192 (81.25%), Postives = 159/192 (82.81%), Query Frame = 1 
Query:    1 GGGGFLPGGADSVGRSSPLSDSPLVTGLSFPLELAGYSGGGGG-GRVFGRTGSEGALSAHGSGPTAAVAAIFSGTRSEGKAGSDEGGQGTA---GAGFPGSAAGEGAGRGFASGLFGLDTVGGGVGIGSSPSSHNSAGPVDAAPATMPQQLNLGRGFGXXXXXXAIGSGMDPPLRVDTNSLFSSFGQPGSDG 564
            GGGGF+PGGAD  GR+SPLSDSPLVTGLSFPLELAGY G      RVFGRTGSEGALSAHGSGP AA AAIFS TRSEGKAGSD+G Q       AGF GSAAGEGAG GFASGLFGLDTVGGGVGIGSSPSSHNS GPVDAAPA MPQQLNLGRGFG      AIGSGMDPPLR DTNSLFS FGQ GSDG
Sbjct:  942 GGGGFVPGGADCGGRASPLSDSPLVTGLSFPLELAGYGGXXXXXARVFGRTGSEGALSAHGSGPAAAAAAIFSATRSEGKAGSDDGRQXXXXXXAAGFTGSAAGEGAGPGFASGLFGLDTVGGGVGIGSSPSSHNSTGPVDAAPAMMPQQLNLGRGFGGGGG--AIGSGMDPPLRADTNSLFSPFGQRGSDG 1131
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BLAST of mRNA_E_fasciculatus_S2_contig689.15017.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G531_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 1.430e-73
Identity = 159/217 (73.27%), Postives = 162/217 (74.65%), Query Frame = 1 
Query:    1 GGGGFLPGGADSVGRSSPLSDSPLVTGLSFPLELAGYSGGGGG-GRVFGRTGSEGALSAHGSGPTAAVAAIFSGTRSEGKAGSDEGGQGT----AGAGFPGSAAGEGAGRGFASGLFGLDTVGGGVGIGSSPSSHNSAGPVDAAPATMPQQLNLGRGFGXXXXXXAIGSGMDPPLRVDTNSLFSSFGQPGSDGXXXXXXVMPSGHRQSSGVSSTPVG 636
            GGGGF+PGGADSVGR+SPLSDSPLVTGLSFPLE AGY G      RVFGRTGSEGALSAHGSGP AAV                     T    A AGF GSAAGEGAGRGF SGLFGLDTVGGGVGIGSSPSSHNSAGPVDAAPA MPQQLNLGRGFG      AIGSGMDPPL VDTNSLFSSFGQ GSD       V PSGHRQ+S VSSTPVG
Sbjct:  739 GGGGFVPGGADSVGRASPLSDSPLVTGLSFPLEFAGYGGXXXXXARVFGRTGSEGALSAHGSGPGAAVXXXXXXXXXXXXXXXXXXXXXTSATAAPAGFTGSAAGEGAGRGFVSGLFGLDTVGGGVGIGSSPSSHNSAGPVDAAPAMMPQQLNLGRGFGGGGG--AIGSGMDPPLHVDTNSLFSSFGQRGSD--WSGGDVRPSGHRQNSSVSSTPVG 951
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig689.15017.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.830e-7681.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.430e-7373.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig689contigE_fasciculatus_S2_contig689:18874..20336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size800
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008290.1
Cds size798
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842345.8276541-CDS-E_fasciculatus_S2_contig689:18875..190881696842345.8276541-CDS-E_fasciculatus_S2_contig689:18875..19088Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig689 18876..19088 -
1696842345.847311-CDS-E_fasciculatus_S2_contig689:19751..203361696842345.847311-CDS-E_fasciculatus_S2_contig689:19751..20336Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig689 19752..20336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig689.15017.1prot_E_fasciculatus_S2_contig689.15017.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig689 18876..20336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig689.15017.1

>prot_E_fasciculatus_S2_contig689.15017.1 ID=prot_E_fasciculatus_S2_contig689.15017.1|Name=mRNA_E_fasciculatus_S2_contig689.15017.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=266bp
GGGGFLPGGADSVGRSSPLSDSPLVTGLSFPLELAGYSGGGGGGRVFGRT
GSEGALSAHGSGPTAAVAAIFSGTRSEGKAGSDEGGQGTAGAGFPGSAAG
EGAGRGFASGLFGLDTVGGGVGIGSSPSSHNSAGPVDAAPATMPQQLNLG
RGFGGGGGGGAIGSGMDPPLRVDTNSLFSSFGQPGSDGGGGGGDVMPSGH
RQSSGVSSTPVGGERGGAVGGGGGGVAPSAPSEAAATPVLASPLPATTTT
ARPTPQPVPTPTAQLA
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mRNA from alignment at E_fasciculatus_S2_contig689:18874..20336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig689.15017.1 ID=mRNA_E_fasciculatus_S2_contig689.15017.1|Name=mRNA_E_fasciculatus_S2_contig689.15017.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1463bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig689:18874..20336- (Ectocarpus fasciculatus EfasUO2)
GGCGGCGGCGGGTTCTTGCCTGGAGGGGCGGACAGCGTCGGCCGCTCGTC
CCCGCTCAGCGACAGTCCTCTCGTTACCGGCCTGTCGTTCCCGCTCGAGC
TCGCCGGGTATAGCGGCGGTGGTGGCGGTGGCCGGGTGTTTGGCAGGACG
GGGAGCGAGGGCGCCCTGAGCGCGCACGGTAGCGGTCCCACCGCCGCCGT
CGCCGCCATTTTCTCCGGTACCCGCAGCGAGGGCAAGGCCGGGAGCGACG
AAGGCGGGCAGGGAACGGCCGGCGCCGGCTTCCCTGGCAGCGCGGCCGGC
GAAGGCGCCGGTCGAGGGTTCGCCTCCGGCTTGTTTGGGCTGGACACGGT
CGGCGGCGGAGTTGGGATCGGGTCCTCGCCGTCGTCTCACAATAGCGCCG
GCCCCGTGGATGCTGCTCCTGCGACAATGCCGCAGCAGCTCAACCTCGGC
CGTGGCTTCGGCGGGGGCGGCGGCGGCGGCGCAATTGGCTCGGGAATGGA
CCCGCCGCTCCGCGTGGACACCAACAGCCTGTTTTCGTCGTTCGGACAGC
CGGGGAGTGACGGTGGCGGGGGCGGCGGCGACGTGGTGAGTTTGTGTACG
GGATGGAAATCGCAACCGTAACACGCTTTTCTTCCTCGTCGGGCTCCCGG
CGTCCGTGTGTGTGTCGCCGTCACGTCCTCTTTTTTCTGTGCCGATCATG
CCGATGGCCGCGAGCTAGAGTTCGGCCACGAGTAATCTGCCCCATAACAT
TGCGGTAGCAGAGATGTTAACCCCTTTGGCCCTAGGTTCCGTTTCGGCAT
CAATTTGTTTTTCCACAGCAGAAAAAAAAAGAGACAGAAGTGCAGAAAAA
GACAGCAGCGTACTTCTGTAGACCCAACAGCTATCTCCACCTGTTGGCCA
TGCGGGCAATCCACGACAGGGTTGTGGTCACAGACAGAGTCATAAGGTTG
ATGGGTGGTCACGCCGCGGCCGGTAGGGCAGGTAGCCTTGTAGACCTTGA
AATGATCGGTCGTCTAGCTGCCTCAACAACTCTATTCTCAGTATGTTCAA
ATGATCAGTGAAAATGATCAGTGAGAGGGCCTTGTAGAGTCAGCCGGTAT
TTTTACTTCTGTATTTTTCTGTCCCCCATGAGCCCTGCCGGCTCTCTAGA
GCTCCTGTTTTTTCACACAAGCACACCTGCTCACCGCACCCTGTAGGGCC
ACAAGGGTTAACCCTCAGTTTTAACCGCCTGTGTGGTCGATCGAGCAGAT
GCCCTCCGGCCACCGTCAGAGCAGCGGTGTCTCCTCCACTCCCGTTGGAG
GAGAGCGCGGCGGGGCGGTAGGCGGCGGCGGCGGTGGCGTGGCCCCGTCG
GCGCCATCGGAAGCAGCCGCAACACCGGTGTTGGCCTCGCCCCTGCCGGC
AACAACAACAACAGCGCGTCCTACCCCGCAGCCGGTGCCGACGCCGACAG
CTCAGCTAGCCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig689:18874..20336-

>mRNA_E_fasciculatus_S2_contig689.15017.1 ID=mRNA_E_fasciculatus_S2_contig689.15017.1|Name=mRNA_E_fasciculatus_S2_contig689.15017.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=798bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig689:18874..20336- (Ectocarpus fasciculatus EfasUO2)
GGCGGCGGCGGGTTCTTGCCTGGAGGGGCGGACAGCGTCGGCCGCTCGTC
CCCGCTCAGCGACAGTCCTCTCGTTACCGGCCTGTCGTTCCCGCTCGAGC
TCGCCGGGTATAGCGGCGGTGGTGGCGGTGGCCGGGTGTTTGGCAGGACG
GGGAGCGAGGGCGCCCTGAGCGCGCACGGTAGCGGTCCCACCGCCGCCGT
CGCCGCCATTTTCTCCGGTACCCGCAGCGAGGGCAAGGCCGGGAGCGACG
AAGGCGGGCAGGGAACGGCCGGCGCCGGCTTCCCTGGCAGCGCGGCCGGC
GAAGGCGCCGGTCGAGGGTTCGCCTCCGGCTTGTTTGGGCTGGACACGGT
CGGCGGCGGAGTTGGGATCGGGTCCTCGCCGTCGTCTCACAATAGCGCCG
GCCCCGTGGATGCTGCTCCTGCGACAATGCCGCAGCAGCTCAACCTCGGC
CGTGGCTTCGGCGGGGGCGGCGGCGGCGGCGCAATTGGCTCGGGAATGGA
CCCGCCGCTCCGCGTGGACACCAACAGCCTGTTTTCGTCGTTCGGACAGC
CGGGGAGTGACGGTGGCGGGGGCGGCGGCGACGTGATGCCCTCCGGCCAC
CGTCAGAGCAGCGGTGTCTCCTCCACTCCCGTTGGAGGAGAGCGCGGCGG
GGCGGTAGGCGGCGGCGGCGGTGGCGTGGCCCCGTCGGCGCCATCGGAAG
CAGCCGCAACACCGGTGTTGGCCTCGCCCCTGCCGGCAACAACAACAACA
GCGCGTCCTACCCCGCAGCCGGTGCCGACGCCGACAGCTCAGCTAGCC
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