mRNA_E_fasciculatus_S2_contig686.14992.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig686.14992.1
Unique NamemRNA_E_fasciculatus_S2_contig686.14992.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig686.14992.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU79_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 2.060e-88
Identity = 216/388 (55.67%), Postives = 248/388 (63.92%), Query Frame = 3 
Query:  279 GSGVATLALPSAGGVLAGAVEGGEML--EQQAGLQMAREQFTTREWELDSRHSEHETAYRMQASNRRDTRIAEFTRRADERARNAQLANQHEES------TAIDRERMQGEQAHRMRQEEDGERR-------ERQARDHGFWRALSMFEFFLAPAVAAYNKGLTPEGILDDAWKVLVAECAPGGIGNGVPLEGGTTGALEG-----CNA----GG----AADGSENALWWASSYAGSTAGAVVRAGYSSGGWLLEKTLGLVIPDVLCEARAVLSLVWSLFVLALVSRMVKGVLGSGRVGDVALCGLLVAWVWVQFQGWVQRTMLELLLLLAPAPVLVMFYGYVLEYVEHHHEPDGRWRMWGWDTRPVWFRVLPFIMSSALACFLGVRA 1358
            GS VAT A PS G     AV GGE L   Q+  L + R   T  +  +     +H+ A   +AS     R+  +   A+E  R A  +   E S       A++ +RMQ E+AHR R+E D +RR       + QARD  FW ALS  E  L  AVAAYNKGLTP  +LD A +VLVAECA GG+G  V LEGGTTGALEG     C A    GG    AADGSE ALWWA SYAGSTAGAVVRAGYSSG WLL KTLGLVIPDV CEAR V +LV SLF LAL SR+V G+LGSGR   VA   LLVAWVW +FQG V R + ELL+LLAP P LVM YGYVL YVE + +P GRW + G D RPVWFRVLP ++SSALA FLG RA
Sbjct:  573 GSDVATWARPSGG-----AVAGGETLLSRQEELLVVRRSAETEFKTHVTKLQEDHKRACEKEAS-----RLKAWY--AEESYRQAYFSRLDERSFLEASKIAMEMKRMQDEEAHRRREEVDAKRRRDDRRLEKLQARDGDFWLALSALEVCLVAAVAAYNKGLTPRVVLDAAREVLVAECADGGVGVVVTLEGGTTGALEGYDDGACGARDADGGWWRDAADGSEGALWWALSYAGSTAGAVVRAGYSSGRWLLGKTLGLVIPDVRCEARTVFALVASLFFLALASRIVGGLLGSGRAHVVARRWLLVAWVWARFQGSVLRAVWELLMLLAPTPALVMAYGYVLGYVERYRKPGGRWWVRGRDVRPVWFRVLPTVVSSALAWFLGARA 948
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BLAST of mRNA_E_fasciculatus_S2_contig686.14992.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX0_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 5.390e-65
Identity = 154/284 (54.23%), Postives = 172/284 (60.56%), Query Frame = 3 
Query:  636 QARDHGFWRALSMFEFFLAPAVAAYNKG--LTPEGILDDAWKVLVAECAPGG-----------------IGNGVP----LEGGTTGALEG---CNAGGA------------ADGSENALWWASSYAGSTAGAVVRAGYSSGGWLLEKTLGLVIPDVLCEARAVLSLVWSLFVLALVSRMVKGVL----GSGRVGDVALCGLLVAWVWVQFQGWVQRTMLELLLLLAPAPVLVMFYGYVLEYVEHHHEPDGRWRMWGWDTRPVWFRVLPFIMSSALACFLGVRAS 1361
            QARD  FW ALS FE  LA A AAY KG  L P  ILD AW++LVAECA GG                  G   P    LEGGT GAL+    C AG              +DGSE+ALWWA SYAGSTAGAVVRAGYSSGGWLL +TLG V P V CE RAV SLV  L  LAL  ++V G+L    G G    V    LL  WVW +FQGWV      +LLLLAPAP LV+ YG V+ YVE H +PDG W + GWD RPVWFRVLP +++S LA FLG RAS
Sbjct:  677 QARDGDFWLALSAFEVCLAAAAAAYKKGISLAPGAILDAAWRLLVAECADGGXXXVVVTGAMPPFCQNPFGAAAPAATSLEGGTAGALDNNGECGAGXXXXXXXXXXXXXPSDGSESALWWALSYAGSTAGAVVRAGYSSGGWLLGQTLGRVTPGVRCEVRAVFSLVAWLLSLALAQKIVGGLLLGPGGGGPATGVLRWLLLAVWVWARFQGWVVSAARGMLLLLAPAPALVLAYGLVMGYVERHRKPDGCWWVRGWDVRPVWFRVLPAVVASGLAWFLGGRAS 960
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BLAST of mRNA_E_fasciculatus_S2_contig686.14992.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L440_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 4.070e-63
Identity = 151/290 (52.07%), Postives = 168/290 (57.93%), Query Frame = 3 
Query:  630 ERQARDHGFWRALSMFEFFLAPAVAAYNKG--LTPEGILDDAWKVLVAECAPGGIGN--------------------------GVPLEGGTTGALEGCNAGGA--------------ADGSENALWWASSYAGSTAGAVVRAGYSSGGWLLEKTLGLVIPDVLCEARAVLSLVWSLFVLALVSRMVKGVL----GSGRVGDVALCGLLVAWVWVQFQGWVQRTMLELLLLLAPAPVLVMFYGYVLEYVEHHHEPDGRWRMWGWDTRPVWFRVLPFIMSSALACFLGVRAS 1361
            E QARD GFW ALS FE  LA A AAY KG  L P  ILD AW +LVAECA G                                PLEGG  G L+                     +DGSE+ALWWA SYAGSTAGAVVRAGYSSGGWLL +TLGLV PDV CE RAVLSLV  L  LAL  ++V G+L    G G    V    LL  WVW +FQGWV      +LLLLAP P LV+ YG V+ YVE H +PDG W + GWD RPVWFRVLP +++S LA FLG RAS
Sbjct:  643 ELQARDGGFWLALSAFEVCLAAAGAAYKKGINLAPGAILDAAWGLLVAECADGXXXXXXXXXVAVTGAVPPFCENPFGAAAPAATPLEGGAAGVLDXXXXXXXXXXXXXXXXXXXXRSDGSESALWWALSYAGSTAGAVVRAGYSSGGWLLGQTLGLVTPDVRCEVRAVLSLVAWLLSLALAQKIVGGLLLGPGGGGPATGVLRWLLLAVWVWARFQGWVVSAARGMLLLLAPVPALVLAYGLVMGYVERHRKPDGCWWVRGWDVRPVWFRVLPTVVASGLAWFLGGRAS 932
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig686.14992.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.060e-8855.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.390e-6554.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.070e-6352.07protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig686contigE_fasciculatus_S2_contig686:11068..13716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2649
Hectar predicted targeting categoryother localisation
Exons1
Cds size1164
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842343.4945598-UTR-E_fasciculatus_S2_contig686:11067..112671696842343.4945598-UTR-E_fasciculatus_S2_contig686:11067..11267Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig686 11068..11267 +
1696842343.521587-UTR-E_fasciculatus_S2_contig686:12431..137161696842343.521587-UTR-E_fasciculatus_S2_contig686:12431..13716Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig686 12432..13716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842343.5045328-CDS-E_fasciculatus_S2_contig686:11267..124311696842343.5045328-CDS-E_fasciculatus_S2_contig686:11267..12431Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig686 11268..12431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig686.14992.1prot_E_fasciculatus_S2_contig686.14992.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig686 11268..12431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig686.14992.1

>prot_E_fasciculatus_S2_contig686.14992.1 ID=prot_E_fasciculatus_S2_contig686.14992.1|Name=mRNA_E_fasciculatus_S2_contig686.14992.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=388bp
MLLRDGPVEERVVDGGAGLLMGAGGGGSGVATLALPSAGGVLAGAVEGGE
MLEQQAGLQMAREQFTTREWELDSRHSEHETAYRMQASNRRDTRIAEFTR
RADERARNAQLANQHEESTAIDRERMQGEQAHRMRQEEDGERRERQARDH
GFWRALSMFEFFLAPAVAAYNKGLTPEGILDDAWKVLVAECAPGGIGNGV
PLEGGTTGALEGCNAGGAADGSENALWWASSYAGSTAGAVVRAGYSSGGW
LLEKTLGLVIPDVLCEARAVLSLVWSLFVLALVSRMVKGVLGSGRVGDVA
LCGLLVAWVWVQFQGWVQRTMLELLLLLAPAPVLVMFYGYVLEYVEHHHE
PDGRWRMWGWDTRPVWFRVLPFIMSSALACFLGVRAS*
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mRNA from alignment at E_fasciculatus_S2_contig686:11068..13716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig686.14992.1 ID=mRNA_E_fasciculatus_S2_contig686.14992.1|Name=mRNA_E_fasciculatus_S2_contig686.14992.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2649bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig686:11068..13716+ (Ectocarpus fasciculatus EfasUO2)
GCTTGGCGAGGAACGGCGACCCATCTAGCCTCCTTAGTGCCTGCGTACAT
GCGGAAACCTTCTCCTGCAAGGGCCTGAAGGTTTACGAAACCGCGAAGAG
TTTGCTGAACAAGGCACGAGAGGACCAGCTACAGATAGTGGCTCGCACGA
TACTCATTAATCGCTTCAACGTGCACGTCGACTTGGCCTGGCGCCCCGCG
ATGCTGCTGAGGGATGGCCCCGTGGAAGAAAGGGTTGTCGACGGCGGTGC
CGGGCTCTTGATGGGCGCAGGCGGTGGCGGCAGTGGCGTGGCGACATTGG
CCTTACCCTCAGCGGGAGGAGTATTAGCGGGTGCCGTAGAGGGGGGAGAG
ATGCTGGAGCAGCAGGCGGGGTTGCAAATGGCGAGGGAGCAGTTCACGAC
TCGCGAATGGGAGCTGGACTCGAGGCACAGCGAGCATGAGACAGCGTACA
GGATGCAAGCATCCAACCGAAGGGACACGAGGATAGCGGAGTTCACACGC
CGGGCGGACGAGCGAGCGCGCAACGCTCAGTTGGCCAACCAACACGAAGA
ATCGACAGCGATAGACAGGGAGCGGATGCAAGGCGAACAAGCGCATCGTA
TGCGGCAGGAAGAGGATGGCGAGCGCCGGGAGCGTCAGGCTCGCGACCAC
GGCTTCTGGCGAGCCCTCTCGATGTTTGAGTTCTTCCTCGCCCCTGCCGT
CGCCGCCTATAACAAGGGGCTTACCCCCGAAGGAATCTTGGACGACGCGT
GGAAGGTCTTAGTGGCCGAGTGCGCGCCCGGCGGCATTGGGAATGGCGTG
CCCTTGGAAGGAGGGACTACTGGCGCGCTCGAAGGGTGTAACGCAGGGGG
TGCCGCCGACGGAAGCGAGAACGCTCTGTGGTGGGCGTCGTCCTACGCGG
GATCGACCGCCGGAGCCGTAGTGCGGGCGGGCTACTCGTCCGGTGGCTGG
CTCCTGGAGAAGACTCTCGGCCTGGTGATCCCGGACGTTCTGTGCGAGGC
ACGCGCGGTTCTCTCCCTGGTTTGGTCGCTCTTTGTCCTCGCTCTGGTTT
CGAGAATGGTCAAGGGGGTGCTGGGATCTGGCAGGGTCGGCGACGTGGCG
TTGTGCGGGCTCCTGGTCGCGTGGGTGTGGGTACAATTCCAGGGCTGGGT
GCAGCGCACCATGTTGGAGCTGCTACTGCTGCTGGCGCCCGCGCCGGTGC
TGGTGATGTTCTACGGGTACGTGCTGGAGTACGTGGAGCATCACCACGAG
CCGGACGGGCGCTGGCGGATGTGGGGGTGGGACACGCGGCCCGTCTGGTT
CAGGGTTCTGCCGTTCATCATGTCAAGTGCCCTGGCCTGTTTCCTGGGAG
TGCGGGCATCGTGAACGTGCCTACGGACATCGATTTACTGTTTCCTCGCC
ACTAATACTCCTGGTAAATCGTTCACGTGCATCGTCTCTCGATGCAAGTG
CTTTCTTGGCGTTGGAATCCTAGTTGGTAGAACAATATCCTGGTTGATTC
TATAGACGTTTGGTCTCGCCGATGTGCGTATGTACCTTGGATGTGCGCAA
GTACCTACTGTAGAGCTTGTCAACTCACAGGCATTTTGAAGGAAGAACGC
ATGCTGTTTGCGTACAGTGTACAGTTGCTTGAGCACCAAAATTCGTGGAG
CAAAAGTGCCAGGTTTCATCGATCCATGGAGGGAAGAGAATAGAAGTGAT
GCCGGGGATGATTTTCCTCCTGCGGCGGGACTGAAGAAGGTGTTTTCGTG
TTTCCAGTCCCACAACATGATGTGGTATGTCGTGTAAGACACTCTGGGAA
AAGTGCAGGAATCAGTGGTCAAACTTGTTGAATCGAATGGGGAATTTTAG
GATAACTTGGTCAGCAAAATCCTAGTCAAGATGTGTAGACGTGGGAAGAT
ATCGGAGAAGTGAAGTATATACTATAAGTCAGGAAAATACGGAGAATGAT
AACAGCTGAGAGGCTGTTGTTGACAAGCATGAGTAACGCGCGTACCGTTA
AACCACAATTTATGGCGGCGGATTTGTGCAGTAGATTGGAGCACACGTAA
CATTGCATCCATCATGGGGACGTGTTGAAATACAGCGCATTAGTGCTGTG
GGGTGTGTGTAGTAGTATAGGTGCAGCTGTATGATTGCTGTACGTTGTAT
TCAATCATACGTAGGTGCGGTACAGACTAGATTTAATGTTTGGTAGAACG
TAACGTGTAGCAACGAGTTGGTAGCGAGGTCGTGAATGAATAGATGTTGA
TCGTAGGAGATTTGATACAGTTGTAGCGAGATCACGAGGTATTGCGAGTT
CCACCAGGCCCACTCCCAACTATCCCTCAACATCTCAACTGTGCAAGTAA
GCTGTGAAGTGAACAAGATTGAAAAGAAATAAGTACAAGTCCCAGAAGCG
GCATTTAGCAACAACATCGGCTTCGGTCACTGCCTCAACAGACTTCGGTC
TGAACATCACACAGACATCTGTCAGGAACTGGCCAAAGGCTTAACCGCCT
CCAGACCCTTGGTACAGGGCACCTCGACACTACACATTTATACAGTTGAG
CATCATGTTGAGGATCATCGGTGTTCTTTGGAGGAAGGGGGCTTCGGAGA
CGGCGATATTGCCCAGGTGCAGAGGGTTGTTCACCGGGAATAGCCGTGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig686:11068..13716+

>mRNA_E_fasciculatus_S2_contig686.14992.1 ID=mRNA_E_fasciculatus_S2_contig686.14992.1|Name=mRNA_E_fasciculatus_S2_contig686.14992.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1164bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig686:11068..13716+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGCTGAGGGATGGCCCCGTGGAAGAAAGGGTTGTCGACGGCGGTGC
CGGGCTCTTGATGGGCGCAGGCGGTGGCGGCAGTGGCGTGGCGACATTGG
CCTTACCCTCAGCGGGAGGAGTATTAGCGGGTGCCGTAGAGGGGGGAGAG
ATGCTGGAGCAGCAGGCGGGGTTGCAAATGGCGAGGGAGCAGTTCACGAC
TCGCGAATGGGAGCTGGACTCGAGGCACAGCGAGCATGAGACAGCGTACA
GGATGCAAGCATCCAACCGAAGGGACACGAGGATAGCGGAGTTCACACGC
CGGGCGGACGAGCGAGCGCGCAACGCTCAGTTGGCCAACCAACACGAAGA
ATCGACAGCGATAGACAGGGAGCGGATGCAAGGCGAACAAGCGCATCGTA
TGCGGCAGGAAGAGGATGGCGAGCGCCGGGAGCGTCAGGCTCGCGACCAC
GGCTTCTGGCGAGCCCTCTCGATGTTTGAGTTCTTCCTCGCCCCTGCCGT
CGCCGCCTATAACAAGGGGCTTACCCCCGAAGGAATCTTGGACGACGCGT
GGAAGGTCTTAGTGGCCGAGTGCGCGCCCGGCGGCATTGGGAATGGCGTG
CCCTTGGAAGGAGGGACTACTGGCGCGCTCGAAGGGTGTAACGCAGGGGG
TGCCGCCGACGGAAGCGAGAACGCTCTGTGGTGGGCGTCGTCCTACGCGG
GATCGACCGCCGGAGCCGTAGTGCGGGCGGGCTACTCGTCCGGTGGCTGG
CTCCTGGAGAAGACTCTCGGCCTGGTGATCCCGGACGTTCTGTGCGAGGC
ACGCGCGGTTCTCTCCCTGGTTTGGTCGCTCTTTGTCCTCGCTCTGGTTT
CGAGAATGGTCAAGGGGGTGCTGGGATCTGGCAGGGTCGGCGACGTGGCG
TTGTGCGGGCTCCTGGTCGCGTGGGTGTGGGTACAATTCCAGGGCTGGGT
GCAGCGCACCATGTTGGAGCTGCTACTGCTGCTGGCGCCCGCGCCGGTGC
TGGTGATGTTCTACGGGTACGTGCTGGAGTACGTGGAGCATCACCACGAG
CCGGACGGGCGCTGGCGGATGTGGGGGTGGGACACGCGGCCCGTCTGGTT
CAGGGTTCTGCCGTTCATCATGTCAAGTGCCCTGGCCTGTTTCCTGGGAG
TGCGGGCATCGTGA
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