mRNA_E_fasciculatus_S2_contig68.14921.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig68.14921.1
Unique NamemRNA_E_fasciculatus_S2_contig68.14921.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig68.14921.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ9_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.030e-5
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:  378 SSLSGIPSSTRKCRVGTSRHARHTSRDA 461
            SSLSGIPS  RKCRVGT RHARHTSRDA
Sbjct:  136 SSLSGIPSMIRKCRVGTLRHARHTSRDA 163
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig68.14921.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.030e-589.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig68contigE_fasciculatus_S2_contig68:8002..8465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size464
Hectar predicted targeting categoryother localisation
Exons1
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842336.8468378-CDS-E_fasciculatus_S2_contig68:8003..84651696842336.8468378-CDS-E_fasciculatus_S2_contig68:8003..8465Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig68 8004..8465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig68.14921.1prot_E_fasciculatus_S2_contig68.14921.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig68 8004..8465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig68.14921.1

>prot_E_fasciculatus_S2_contig68.14921.1 ID=prot_E_fasciculatus_S2_contig68.14921.1|Name=mRNA_E_fasciculatus_S2_contig68.14921.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=154bp
RNRRSRTTGRVRRNHCSRTVERLRRNRLSRTVERVRRNRHSRTMERVRRN
RRSRTVGRVRRNHCSRTVERLSRNRLSRTVERVRRNRRSRTMKCVGRNRR
SRTAGRTRSNRCSRMAEHGRRNRHSRAACLESRRRPASAGWARRGTPDTR
LETP
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mRNA from alignment at E_fasciculatus_S2_contig68:8002..8465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig68.14921.1 ID=mRNA_E_fasciculatus_S2_contig68.14921.1|Name=mRNA_E_fasciculatus_S2_contig68.14921.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=464bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig68:8002..8465- (Ectocarpus fasciculatus EfasUO2)
AGGAACCGCCGCTCGAGAACCACGGGACGCGTGCGGCGGAACCACTGCTC
GAGAACCGTGGAACGGCTGAGGAGGAACCGCCTCTCGAGAACCGTTGAGC
GAGTAAGGCGCAACCGCCACTCGAGAACCATGGAACGCGTGAGGAGGAAC
CGCCGCTCGAGGACCGTGGGACGCGTGCGGCGGAACCACTGCTCGAGAAC
CGTGGAACGGCTGAGCAGGAACCGCCTCTCGAGAACCGTTGAGCGAGTAA
GGCGGAACCGCCGCTCGAGAACCATGAAATGTGTGGGGAGGAACCGCCGC
TCGAGGACCGCGGGACGAACGAGGAGTAACCGCTGTTCGAGGATGGCGGA
ACACGGGAGGAGGAACCGACATTCGAGAGCAGCCTGTCTGGAATCCCGTC
GTCGACCCGCAAGTGCAGGGTGGGCACGTCGCGGCACGCCCGACACACGT
CTAGAGACGCCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig68:8002..8465-

>mRNA_E_fasciculatus_S2_contig68.14921.1 ID=mRNA_E_fasciculatus_S2_contig68.14921.1|Name=mRNA_E_fasciculatus_S2_contig68.14921.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=462bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig68:8002..8465- (Ectocarpus fasciculatus EfasUO2)
AGGAACCGCCGCTCGAGAACCACGGGACGCGTGCGGCGGAACCACTGCTC
GAGAACCGTGGAACGGCTGAGGAGGAACCGCCTCTCGAGAACCGTTGAGC
GAGTAAGGCGCAACCGCCACTCGAGAACCATGGAACGCGTGAGGAGGAAC
CGCCGCTCGAGGACCGTGGGACGCGTGCGGCGGAACCACTGCTCGAGAAC
CGTGGAACGGCTGAGCAGGAACCGCCTCTCGAGAACCGTTGAGCGAGTAA
GGCGGAACCGCCGCTCGAGAACCATGAAATGTGTGGGGAGGAACCGCCGC
TCGAGGACCGCGGGACGAACGAGGAGTAACCGCTGTTCGAGGATGGCGGA
ACACGGGAGGAGGAACCGACATTCGAGAGCAGCCTGTCTGGAATCCCGTC
GTCGACCCGCAAGTGCAGGGTGGGCACGTCGCGGCACGCCCGACACACGT
CTAGAGACGCCA
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