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Homology
BLAST of mRNA_E-fasciculatus_F_contig10875.709.1 vs. uniprot
Match: D7FUK7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK7_ECTSI) HSP 1 Score: 295 bits (754), Expect = 2.030e-93 Identity = 225/276 (81.52%), Postives = 231/276 (83.70%), Query Frame = 1
Query: 4 RGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTDAGFHLQQSPFFVLVGAVSLETISVQGCPQGLPAIDMGAAVPPSTXXXXXXXXXXXXXXXXXXXPLSASRLLSRQPQA------SAAAAGDGRFGLQDDERQRHQPDDGALPFL--TXXXXXXXXXFTATVPGAPASMSSPSSLPSLRHLNLGRCRGVTDLALARVAGAF 807
RGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VTDAGFHLQQSPF+VL+GAVSLETISVQGCPQGLPAIDMG AV PS+ PLS SR +S QPQA + AAAGDGRFG+QD ERQRHQPDDG LPFL XXXXXXX T TVP AP MSS SSLPSLRHLNLGRCRGVTDLALARVAGAF
Sbjct: 43 RGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSGCSYVPKSVFKQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQGLPAIDMGVAVAPSSAIVGPPNEDL---------PLSGSRPVSPQPQALHGNAAATAAAGDGRFGMQD-ERQRHQPDDGGLPFLPSAAAXXXXXXXVTVTVPVAP--MSSSSSLPSLRHLNLGRCRGVTDLALARVAGAF 306
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 300.1 |
| Seed ortholog evalue | 1.4e-78 |
| Seed eggNOG ortholog | 2880.D7FUK7 |
| Preferred name | LRRC29 |
| KEGG ko | ko:K10268,ko:K10275 |
| EggNOG free text desc. | modulation by host of viral RNA genome replication |
| EggNOG OGs | KOG4341@1,KOG4341@2759 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04121 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Ec32 ortholog | Ec-02_002880.1 |
| Exons | 6 |
| Model size | 1065 |
| Cds size | 1065 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10875.709.1 >prot_E-fasciculatus_F_contig10875.709.1 ID=prot_E-fasciculatus_F_contig10875.709.1|Name=mRNA_E-fasciculatus_F_contig10875.709.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=355bp
GRGGYLPGAYHMPHELCARLLRLLVSSKKLTAFTLSGFLSPAALEVDLSG
CSYVPKSVFKQLGFSCPRIVHLNLSMCSQVNNAIVRSVLQGCSALRQLYL
DGCRHVTDAGFHLQQSPFFVLVGAVSLETISVQGCPQGLPAIDMGAAVPP
STATGGPPPRAAGGGGIDEERPLSASRLLSRQPQASAAAAGDGRFGLQDD
ERQRHQPDDGALPFLTSGGGGGGGGFTATVPGAPASMSSPSSLPSLRHLN
LGRCRGVTDLALARVAGAFPGLEGLHLDHCLGVTDAGVAALAAGCRGLRA
LGLRNCGQITDSALEALSVSCPSLEWLDVSWCGGVTDRGFERLVEGCPGL
EEVS* back to topmRNA from alignment at E-fasciculatus_F_contig10875:112..4675- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10875.709.1 ID=mRNA_E-fasciculatus_F_contig10875.709.1|Name=mRNA_E-fasciculatus_F_contig10875.709.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10875:112..4675- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAGGGGGGGATACTTGCCTGGGGCTTACCACATGCCTCACGAGCTGTG
CGCGCGGCTGCTGCGGTTGCTGGTGTCCTCCAAGAAGCTGACAGCCTTCA
CCCTATCAGGTGTGTCATGTGTTTGCGGCGTGTGTGTGTGTGTGTGTGTG
CGTGTGTGTGCCTCTTGGCTTTCGTTTAGGGGGCTGCGGCCTGCCTGCCC
GAGATACAGCAGTGTCGGGCGAAAGAACGTGGGCGTCTTTTGCCTAGCCA
GTGGTTTTCGTGTTGTGGGACACGGGACCGGGGTTAGACGGTTCCCAAGT
GACCGCTCAGCTCGAGACACGGCAGTGCGATCTCTTGGAACCTACTGCTG
TGGACTGACCCCATTTGAAATTTGTTTGTGGGCGAGCATTGCTCCACCGC
CCCATCGCGGGCGGAGTTTGACTCCTGGCCCAAGAACAAGGAGCTCCCAG
AACAAAGTGCAAGTGCCTCCGCCCTCTCTCTCGACTAGCATGGCACGGAA
ACCGTACAGCGGCCTCACAACATAATGCTTCATACGCGTGCTCGGATCAG
TTTCCAAGCTTGCGCACTACTGACCGCCACACTCGGGGGACAGACGAAGC
TTCTCTCGTTGCACTTGAGCTCTCATCTTGATCGCCTCTCTTCTTTTTTC
CGTTGGGGCTCTCGCCCGTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCGCATGCCACGGGCAGGGTTCTTGAGCCCCGCCGCCTTGGAGGT
GGACCTCTCCGGCTGCTCTTACGTCCCGAAGAGCGTCTTCAAGCAGCTGG
GCTTCAGCTGCCCTAGGATCGTTCACCTCAACCTCAGCATGTGCTCGCAG
GTGCGCGTGTGCGTTCGTGCCTTGAGTGGTTGCGTGTACGTTCGAAGGCC
AAAAAGGGGGGGCATGTGAGACACCCTACAACGGGTGGTATGCATACAAT
CTCCGCAGTGTCTGCGGTAGACGACCCCCTGTTTTCACAGGGGATATAGA
TATGTTATTTTGTTTTCGGTACCGGAGAGAGAGGATTCGAAACTGCATGA
GAAGCTCAGGGTTGAGGCGCTGCATTATCCTCGGGCAACTCGCTGTGTGT
GATGATTCACGCTGCTAAAGCAATTTTCGCGAAATCGGCTGTAGTAGTAG
GCCATTGATGTCATGAAACCTCCTCAGCATGTGCTCGGCAGGAAGCGTAC
ACACGTATCGAAGGAAGTGCGGGAGATTGGGTAACTTTCGCGATTTTCGA
TGTCCCGCTCTCAGCTGCTGGGGTCCCTCCCCGGAGCGACAGGAAAGAAC
CGAAACCGCGACACCTACCTTCGCGCTTACCCACCATTGCTTACCACCTG
AGTCGCCGCCCAACTCCTGCCCACGCGCGTACACGGCGTACACGGCATGC
AGGTGAACAACGCCATCGTGCGGAGCGTGCTGCAAGGCTGCTCGGCCCTC
CGGCAGCTCTACCTGGACGGGTGCCGGCACGTGACGGACGCGGGCTTCCA
CCTCCAGCAGTCGCCGTTCTTCGTCCTTGTCGGCGCCGTTTCGCTCGAGA
CCATCAGCGTGCAGGGCTGTCCACAGGTGTGGTGCCTTTGTTGTGCCAAG
TATGTAGCCTTCGCATTGTTTGTTTTTGGATTTAGTAGATAAACATGTCG
GATAAAAGCGTGCAATTGGGGGAAGTTGGGTCAGGCTTTGGGAAAGAGGG
TCTGCGTACCCTCATCCCTCTTCTATTTCCTCGTAGTGCTTAATTTCCCT
TGAAGGCGGTCTTGTTTGCGGTGAGCACTACTGTTTGTTTTTTCTTTTTT
GCGATGCGCTTTCCGTTTGTGCGGTTGACCAACCGGTCATCTTGCCTTTA
TTCTTTATTCTCGGGGCAGTCTCTCTTCCCAAGCATATGCGTTGGGTGTC
AGCAGGTTTATTCATTGCGGTGTATACGGCCTTGGATAGCACCAGGTATG
TGTGTGGTTGTCTGGAGTCATGTCCGCGGTCTGCTTTGCTTTTTTTTTTT
GTCTTTCTTTTTGCGATACGGTTCGGTTTGTACGGTTAGCCAGTCGTTTG
TCCATCTCCCCAAAGCAACAACGTTGAGGGGGGCCCATGGCGGCCTTTTG
CCTCTTTTTTGGTCCTGCATGGGTGGCAGCTTGTGCGCTCAATGTACCGA
TACCCCGTAGCCCGCTCTGGGTGGGGCACACGTTTTCACATCATCACAGC
TCTCCAGGCCCAAAATTCTCGGGAGAGAAATAATGGGTGCTCCACGGTTG
GGGCGGAAATCGCGCGCAGCCAACCCCCCCCCTCAAAAACACGCCTACGT
CCGACATCGCGTGCAACCCCCCCCGCTTTTACAGGTGACGGGCGAGCTTG
TGCTGCACCTCCGCAAGGTTTGCCGCAACCTCAAGGAGCTGGACTTGGCC
CGCTGCAAGAGCGTCACCACGGTGTCTGTGAGGCGGCTGTTCGACTCCTG
CCCCAGCCTCGAGTCCCTCAACCTGTCGTTCCTGGAAGGGGTCGCGGACG
AAGCTTTCGAGGCGAGTCGAGGGGGCGTGTTGACGTGTCCGGGGTCTAGG
CATGGTTTGTTGTGTATGTTTTTTCTGGTTGGGTGGGTTTATGCTTTGAG
CCGACCCAATATCGGGCATCATCTTGAAAGGCGGGATGAATCGTTGGCGT
GTGTTTATTTAGTTGGTGCCGGTGGCGGTAGCCGATCGCGACGAAGGGAA
GCCCGTACGTCCTGTAGACGGATGAATTTGCGCGAGCACCGTCATGTGTG
TACACATGGGCGGTGCTTGGCAGTGTACAGAAGAGGGTAGATTGGCGTGT
GGCAATGAGAAGTAGATGGTAAGTATGAAGACCAGGGGAGATATCATAGG
TGGTTTGAAGACAATGGGAGGCTTGCCCATCACCTTTGCCAGCACATGCC
GATTGAAGGCCTGACAACCTCCCCTCCTCCTCCCGCGGCCCGCCGGGCTC
TGCGCGGCCCTTTCTCCCGCCAACAGGGCTTGCCCGCGATCGACATGGGC
GCGGCCGTCCCTCCGTCAACTGCAACCGGCGGCCCTCCGCCGAGGGCTGC
AGGTGGCGGTGGCATCGACGAAGAACGTCCTCTCTCTGCATCACGCCTGC
TCTCGCGGCAACCCCAGGCGTCGGCGGCAGCAGCGGGGGACGGGAGGTTT
GGGTTGCAGGATGATGAGCGGCAGCGGCATCAGCCGGACGATGGCGCACT
ACCGTTTCTGACGTCTGGTGGTGGTGGTGGTGGTGGTGGCTTCACCGCCA
CGGTCCCGGGAGCACCAGCATCAATGTCGTCGCCTTCGTCTCTGCCCTCC
CTGCGGCACCTCAACCTAGGCCGTTGCAGGGGAGTCACGGACCTCGCGCT
TGCCAGGTATGTGTGTTCCAGACGTGACATTTTTTTCTGTTTTCGTTAAG
ATTTGCATGGTAGTGTACGTTTAAGACTGACGTACCGCCACGGCAACCAA
AAGGGCGATGATGGAGGTGACCATCCTCATTCGTGGCCTGTCCTGTCCGC
TAGGACCCCTCTTCCGACCTTACTGTACCGCCGACACGATCTAACACCCA
AGGCTAGCCACAACACCTGAGACCCAAGCCCCCCCCTCTGGTTGTCTGGG
CAGGGTGGCCGGAGCCTTCCCGGGGCTGGAGGGGTTGCACCTGGACCACT
GCCTTGGAGTGACGGACGCCGGGGTCGCCGCCTTGGCTGCAGGCTGCCGA
GGGCTTAGGGCCCTGGGCCTCAGGAACTGCGGGCAGGTATGTATGAACGC
TGCGCGCGCGCGCGCGTAAGCGGCGCGGCGGAATGAATGCAGTTGTGTTA
TGTAGTCGTGAGTTTTCTCGGAGTACTTTTATTTTTGTCTACGCGTGTGT
AGCAAAGGCTTTCACAGTCGGTGAAGATATTAATGTAACGTTTACACACT
CACACGAGAAACCACCCCCGCAAAGGTTAAGGTTTTGGCGGCATGACTCG
GACCCCCCGAAGCACGCCTCTGTATAGTCGCGCGTAGTCCCGGAATGGGG
GCGGGACAGACAGCCCTTTTCGTGGGAAGTACCTCTCGCCCTCTCCCTCT
ACAGGCGGGCCGAACGTTTGTCCAAATCCCGGCTCTCCCAAGGGGAAAAT
CAGCGTATGCCAACACGGACCTATGCACCCCGCCGGACAGCGGTGATCCC
TTGACGAAGAAACGTTCAACACCAGCACCAGTTGCCCCTTTTCTTTTACC
CTTGAACTCTCTAGAACAAACCGTTGCTACGACCCTCGCCCTGGCCCAAT
CGCTATTCCGTCGTTCGAACAGGGCCTTAGGAAGAAGTCGGCTTGAAACG
CCCGTTGCCCAACGGCACGGACATCTCGCGCGGCTCTACTTGTACCCGAT
TGACTCACCCACGTACCTACGACCTTTCTGCGTTTTGCCCTATATCTTCC
TTGCATGTTGCGGTATTTTGCAGATCACCGACAGCGCTCTGGAGGCGTTG
TCCGTGAGCTGCCCGTCGCTGGAGTGGCTGGACGTGTCGTGGTGCGGAGG
TGTGACAGACCGGGGATTCGAACGGCTCGTGGAGGGATGTCCGGGGCTCG
AGGAGGTTAGTTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10875:112..4675- >mRNA_E-fasciculatus_F_contig10875.709.1 ID=mRNA_E-fasciculatus_F_contig10875.709.1|Name=mRNA_E-fasciculatus_F_contig10875.709.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2130bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10875:112..4675- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAGGGGGGGATACTTGCCTGGGGCTTACCACATGCCTCACGAGCTGTG
CGCGCGGCTGCTGCGGTTGCTGGTGTCCTCCAAGAAGCTGACAGCCTTCA
CCCTATCAGGGCAGGGGGGGATACTTGCCTGGGGCTTACCACATGCCTCA
CGAGCTGTGCGCGCGGCTGCTGCGGTTGCTGGTGTCCTCCAAGAAGCTGA
CAGCCTTCACCCTATCAGGGTTCTTGAGCCCCGCCGCCTTGGAGGTGGAC
CTCTCCGGCTGCTCTTACGTCCCGAAGAGCGTCTTCAAGCAGCTGGGCTT
CAGCTGCCCTAGGATCGTTCACCTCAACCTCAGCATGTGCTCGCAGGGTT
CTTGAGCCCCGCCGCCTTGGAGGTGGACCTCTCCGGCTGCTCTTACGTCC
CGAAGAGCGTCTTCAAGCAGCTGGGCTTCAGCTGCCCTAGGATCGTTCAC
CTCAACCTCAGCATGTGCTCGCAGGTGAACAACGCCATCGTGCGGAGCGT
GCTGCAAGGCTGCTCGGCCCTCCGGCAGCTCTACCTGGACGGGTGCCGGC
ACGTGACGGACGCGGGCTTCCACCTCCAGCAGTCGCCGTTCTTCGTCCTT
GTCGGCGCCGTTTCGCTCGAGACCATCAGCGTGCAGGGCTGTCCACAGGT
GAACAACGCCATCGTGCGGAGCGTGCTGCAAGGCTGCTCGGCCCTCCGGC
AGCTCTACCTGGACGGGTGCCGGCACGTGACGGACGCGGGCTTCCACCTC
CAGCAGTCGCCGTTCTTCGTCCTTGTCGGCGCCGTTTCGCTCGAGACCAT
CAGCGTGCAGGGCTGTCCACAGGGCTTGCCCGCGATCGACATGGGCGCGG
CCGTCCCTCCGTCAACTGCAACCGGCGGCCCTCCGCCGAGGGCTGCAGGT
GGCGGTGGCATCGACGAAGAACGTCCTCTCTCTGCATCACGCCTGCTCTC
GCGGCAACCCCAGGCGTCGGCGGCAGCAGCGGGGGACGGGAGGTTTGGGT
TGCAGGATGATGAGCGGCAGCGGCATCAGCCGGACGATGGCGCACTACCG
TTTCTGACGTCTGGTGGTGGTGGTGGTGGTGGTGGCTTCACCGCCACGGT
CCCGGGAGCACCAGCATCAATGTCGTCGCCTTCGTCTCTGCCCTCCCTGC
GGCACCTCAACCTAGGCCGTTGCAGGGGAGTCACGGACCTCGCGCTTGCC
AGGGCTTGCCCGCGATCGACATGGGCGCGGCCGTCCCTCCGTCAACTGCA
ACCGGCGGCCCTCCGCCGAGGGCTGCAGGTGGCGGTGGCATCGACGAAGA
ACGTCCTCTCTCTGCATCACGCCTGCTCTCGCGGCAACCCCAGGCGTCGG
CGGCAGCAGCGGGGGACGGGAGGTTTGGGTTGCAGGATGATGAGCGGCAG
CGGCATCAGCCGGACGATGGCGCACTACCGTTTCTGACGTCTGGTGGTGG
TGGTGGTGGTGGTGGCTTCACCGCCACGGTCCCGGGAGCACCAGCATCAA
TGTCGTCGCCTTCGTCTCTGCCCTCCCTGCGGCACCTCAACCTAGGCCGT
TGCAGGGGAGTCACGGACCTCGCGCTTGCCAGGGTGGCCGGAGCCTTCCC
GGGGCTGGAGGGGTTGCACCTGGACCACTGCCTTGGAGTGACGGACGCCG
GGGTCGCCGCCTTGGCTGCAGGCTGCCGAGGGCTTAGGGCCCTGGGCCTC
AGGAACTGCGGGCAGGGTGGCCGGAGCCTTCCCGGGGCTGGAGGGGTTGC
ACCTGGACCACTGCCTTGGAGTGACGGACGCCGGGGTCGCCGCCTTGGCT
GCAGGCTGCCGAGGGCTTAGGGCCCTGGGCCTCAGGAACTGCGGGCAGAT
CACCGACAGCGCTCTGGAGGCGTTGTCCGTGAGCTGCCCGTCGCTGGAGT
GGCTGGACGTGTCGTGGTGCGGAGGTGTGACAGACCGGGGATTCGAACGG
CTCGTGGAGGGATGTCCGGGGCTCGAGGAGGTTAGTTAGATCACCGACAG
CGCTCTGGAGGCGTTGTCCGTGAGCTGCCCGTCGCTGGAGTGGCTGGACG
TGTCGTGGTGCGGAGGTGTGACAGACCGGGGATTCGAACGGCTCGTGGAG
GGATGTCCGGGGCTCGAGGAGGTTAGTTAG back to top
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