mRNA_E-fasciculatus_F_contig10872.708.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10872.708.1
Unique NamemRNA_E-fasciculatus_F_contig10872.708.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10872.708.1 vs. uniprot
Match: A0A6H5L6A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A5_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 9.260e-64
Identity = 246/337 (73.00%), Postives = 257/337 (76.26%), Query Frame = 1 
Query:   61 MEPRDPRDKRRHRDPAPLNSNLYDRGGRGGMMMMISLSTTSTCPLSVVSKRAKTRAMVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPRGXXXXXXXAAGGSRGGQALPRSSRDGSAKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LDLMDGHLTDSEQDHGYSXXXXXXXXXXXXXXXXXSSWVDQGGVDGGRANAYPWADGDDASAQLNRAGRGEGKGFEESWKGDGEGGEGRPWKHEDLKQLLQDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVPRRRPGAGWGPPPNQG 1068
            MEPR PRDKRR RD   L+SN    GG GGM+      +TSTCP SVVSKR KTRA+VL                  XXXXXXXXXXXXXXXX APRGXX     +AG SRGGQALPRSSRDGSA+D XXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXX  LDLMDGHLTDSEQDHGYS   XXXXXXXX      SSWVDQGGV+GGRANA  WADGDDASAQ +RAGRGE +GF+ESWKGDGEG EGRPWKHEDLKQLLQDLE      XXXXXXXXXXXXXXXXXXXXXXX X        XXXXXXX DGVPRRRPGAGWG PP+QG
Sbjct:    1 MEPRHPRDKRRRRDAPRLHSNCD--GGNGGMI------STSTCP-SVVSKRDKTRALVLTLLYLCSCPVVSTDSAAPXXXXXXXXXXXXXXXXXAPRGXXATA--SAGSSRGGQALPRSSRDGSAEDVXXXXXXXXXXXXXXXXXXXXXXXXSTGXXXXXXXXXXDHLDLMDGHLTDSEQDHGYSHERXXXXXXXXVQGHPRSSWVDQGGVNGGRANANAWADGDDASAQWSRAGRGEWRGFDESWKGDGEGAEGRPWKHEDLKQLLQDLEDTEIAGXXXXXXXXXXXXXXXXXXXXXXXRXGEGVVAGEXXXXXXXEDGVPRRRPGAGWGTPPSQG 326
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BLAST of mRNA_E-fasciculatus_F_contig10872.708.1 vs. uniprot
Match: D7FZ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ23_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 4.850e-40
Identity = 136/167 (81.44%), Postives = 138/167 (82.63%), Query Frame = 1 
Query:  568 MDGHLTDSEQDHGYSXXXXXXXXXXXXXXXXXSSWVDQGGVDGGRANAYPWADGDDASAQLNRAGRGEGKGFEESWKGDGEGGEGRPWKHEDLKQLLQDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVPRRRPGAGWGPPPNQG 1068
            MDGHLTDSEQDHGYS                 SSWVDQGGV+GGRAN Y WAD DDASAQ +RAGRGEGKGFEESWK DGEGGEGRPWKHEDLKQLL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DGVPR RPGAGWG PPNQG
Sbjct:    1 MDGHLTDSEQDHGYSHERYQQQHQHQVQGHPRSSWVDQGGVNGGRANGYGWADRDDASAQWSRAGRGEGKGFEESWKVDGEGGEGRPWKHEDLKQLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGVPRSRPGAGWGTPPNQG 167
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10872.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6A5_9PHAE9.260e-6473.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ23_ECTSI4.850e-4081.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10872contigE-fasciculatus_F_contig10872:263..2411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue4.6e-37
Seed eggNOG ortholog2880.D7FZ23
EggNOG OGs2CZK1@1,2SAQY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_001270.1
Exons3
Model size1070
Cds size1068
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10872.708.1prot_E-fasciculatus_F_contig10872.708.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10872 263..2411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927588.034074-CDS-E-fasciculatus_F_contig10872:262..4691622927588.034074-CDS-E-fasciculatus_F_contig10872:262..469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10872 263..469 -
1695995608.95999-CDS-E-fasciculatus_F_contig10872:262..4691695995608.95999-CDS-E-fasciculatus_F_contig10872:262..469Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10872 263..469 -
1622927588.0562572-CDS-E-fasciculatus_F_contig10872:835..11581622927588.0562572-CDS-E-fasciculatus_F_contig10872:835..1158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10872 836..1158 -
1695995608.9696152-CDS-E-fasciculatus_F_contig10872:835..11581695995608.9696152-CDS-E-fasciculatus_F_contig10872:835..1158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10872 836..1158 -
1622927588.0771952-CDS-E-fasciculatus_F_contig10872:1873..24111622927588.0771952-CDS-E-fasciculatus_F_contig10872:1873..2411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10872 1874..2411 -
1695995608.9780188-CDS-E-fasciculatus_F_contig10872:1873..24111695995608.9780188-CDS-E-fasciculatus_F_contig10872:1873..2411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10872 1874..2411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10872.708.1

>prot_E-fasciculatus_F_contig10872.708.1 ID=prot_E-fasciculatus_F_contig10872.708.1|Name=mRNA_E-fasciculatus_F_contig10872.708.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=356bp
QTRKTDREEEAMVRSSRLRDMEPRDPRDKRRHRDPAPLNSNLYDRGGRGG
MMMMISLSTTSTCPLSVVSKRAKTRAMVLALLYLCSCPAVSAAAAAPAPP
PPPPPPPPPPPPGDAPRGGGATASAAAGGSRGGQALPRSSRDGSAKDVAA
TASAVAAAAAAAAAADAGGGGSTGGESTAGETTTDHLDLMDGHLTDSEQD
HGYSHERYQQQHQHPRQGHPRSSWVDQGGVDGGRANAYPWADGDDASAQL
NRAGRGEGKGFEESWKGDGEGGEGRPWKHEDLKQLLQDLEDTEIAGAGGA
KRGRGRRRYRSPPPSRPGARGGEGVLSGETDETDDTEDGVPRRRPGAGWG
PPPNQG
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mRNA from alignment at E-fasciculatus_F_contig10872:263..2411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10872.708.1 ID=mRNA_E-fasciculatus_F_contig10872.708.1|Name=mRNA_E-fasciculatus_F_contig10872.708.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2149bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10872:263..2411- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACACGCAAGACAGACAGAGAAGAGGAAGCTATGGTACGTTCATCAAG
GTTACGAGACATGGAGCCTCGAGATCCTCGAGACAAGAGGCGACACCGAG
ACCCCGCCCCCCTTAACTCCAACTTGTACGACAGAGGCGGCCGCGGCGGG
ATGATGATGATGATATCATTATCAACAACATCAACATGCCCGCTGTCTGT
CGTGTCCAAGAGGGCCAAGACTAGAGCGATGGTGTTGGCGCTGCTCTACC
TCTGCTCCTGTCCGGCAGTCTCGGCTGCTGCCGCCGCGCCGGCCCCTCCG
CCACCCCCTCCGCCACCTCCGCCACCACCGCCACCTGGTGATGCCCCTCG
AGGCGGCGGTGCAACGGCGTCAGCAGCAGCAGGCGGCTCTCGAGGCGGGC
AAGCGCTACCGAGGTCTAGTCGGGATGGAAGCGCAAAGGACGTTGCCGCG
ACAGCTTCGGCCGTTGCCGCCGCTGCTGCAGCTGCGGCGGCGGCTGACGC
GGGGGGCGGGGGGAGCACTGGAGGGGAGTCTACTGCAGGTGAAACGCTAA
AATATTGAGTTGATGTCTCCCTTTGCTTTGTTCGTCGTCAAAACCGGCTT
CATCCGCGTGTGCGTCGCAGTCTTGTACCTAGTCTAGAGTCTAGTCTGGA
GGAGAAAGGAGCAGCTATTGTCAGCGTACAGCAGTACTGCCTCTATGCAA
TAAGACAACAGACCTGTGTGTCATATGTGCAGTTAGCGAGTAGCATATTG
ACTTTTCGATTGTCCCCATTGCTGATCGTAAGCATCCGTAGAAGCTATTT
AACTCCGCGTAGAACAGCAGCAGCAGACAGCAGCAGACAGGTCTCAGACC
CCGCTGGGAAGGAAGGTCTCCAGGGGACATGATGCGCGCACCTCATGGCA
TGAACCAGCAGTGCCTGGCAGTACAAGCGTACAAACGCAAGACTTGCTGT
AGCCGGGAACACACCGCCATTTCAAGACTAAGACTTGCAGGACTTGTACT
ATGTGGCTGGGGAGCCCACCATGGACCGCGGAGAGCTTGAAACGAAAGGC
GGCAACGATGGTACAGTACTTGCAGAACCTCACCACACACTACAAGATAC
GGCCCACCATGTCTTGTGCTTGTCAGTCTAGTCTCTTGCATTATGATACA
CCACCATTTGTTGCCGCCAGCCCCACACGTCCAGCACCCGCCCACTGCTG
TACTCCTTGTTGTTTGCGCATGAATACGGCCGCTTGGCCGTTCTTCTTGG
CAGGGGAAACAACGACCGATCATCTGGACCTTATGGATGGCCATCTTACA
GACTCTGAACAAGATCACGGATACTCCCACGAGCGCTACCAACAGCAGCA
CCAGCACCCGCGGCAGGGGCACCCGCGGTCAAGCTGGGTCGATCAGGGAG
GCGTTGACGGGGGACGAGCGAACGCGTATCCCTGGGCGGACGGTGACGAC
GCTTCCGCGCAATTGAACAGGGCGGGGAGGGGAGAAGGCAAGGGTTTCGA
AGAGAGCTGGAAGGGCGACGGGGAAGGGGGAGAGGGGAGGCCGTGGAAGC
ATGAGGATCTGAAGCAGCTGCTGCAGGTGCTGGCTGGCTCTCTGTGTGTT
GGGAACCAATTGCAGAACCGTTAAAGAAACAAGCAGTTACGCCTGTGTGA
ATCTGTAATGGTGCGTGAGGCTAGCATAGCGCCTGGTGCTACACATTGCC
ATGTCGTCGTTGCAGTAGGTTTACAGACAACAGGACATATGTTCACTTGC
GACAGGATCGCGGTACGTGAGTGTGTGCAACGCTCGTCCGTGCGCAAGAG
TACCCTGCCAATAAGCCGCGCAGTAGTGAGTGGCTTCGCTCATGCAGTGA
ACGTGAAGCCAGACTTGAAGGAAGACCAAATAACATTCTCAACATGCTGG
CCTACGCTTATCCTCGCACACGACGACGACTTTGTCTGGAAGGACCTCGA
AGACACGGAGATAGCCGGAGCAGGCGGTGCAAAGAGGGGGCGGGGACGCA
GACGGTACCGGTCGCCACCCCCGTCCCGTCCCGGAGCAAGAGGCGGGGAA
GGCGTTCTTTCCGGCGAAACCGACGAAACCGATGATACCGAAGACGGAGT
GCCGAGGAGGCGACCTGGGGCGGGGTGGGGACCACCACCGAACCAAGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10872:263..2411-

>mRNA_E-fasciculatus_F_contig10872.708.1 ID=mRNA_E-fasciculatus_F_contig10872.708.1|Name=mRNA_E-fasciculatus_F_contig10872.708.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2136bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10872:263..2411- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACACGCAAGACAGACAGAGAAGAGGAAGCTATGGTACGTTCATCAAG
GTTACGAGACATGGAGCCTCGAGATCCTCGAGACAAGAGGCGACACCGAG
ACCCCGCCCCCCTTAACTCCAACTTGTACGACAGAGGCGGCCGCGGCGGG
ATGATGATGATGATATCATTATCAACAACATCAACATGCCCGCTGTCTGT
CGTGTCCAAGAGGGCCAAGACTAGAGCGATGGTGTTGGCGCTGCTCTACC
TCTGCTCCTGTCCGGCAGTCTCGGCTGCTGCCGCCGCGCCGGCCCCTCCG
CCACCCCCTCCGCCACCTCCGCCACCACCGCCACCTGGTGATGCCCCTCG
AGGCGGCGGTGCAACGGCGTCAGCAGCAGCAGGCGGCTCTCGAGGCGGGC
AAGCGCTACCGAGGTCTAGTCGGGATGGAAGCGCAAAGGACGTTGCCGCG
ACAGCTTCGGCCGTTGCCGCCGCTGCTGCAGCTGCGGCGGCGGCTGACGC
GGGGGGCGGGGGGAGCACTGGAGGGGAGTCTACTGCAGCAGACACGCAAG
ACAGACAGAGAAGAGGAAGCTATGGTACGTTCATCAAGGTTACGAGACAT
GGAGCCTCGAGATCCTCGAGACAAGAGGCGACACCGAGACCCCGCCCCCC
TTAACTCCAACTTGTACGACAGAGGCGGCCGCGGCGGGATGATGATGATG
ATATCATTATCAACAACATCAACATGCCCGCTGTCTGTCGTGTCCAAGAG
GGCCAAGACTAGAGCGATGGTGTTGGCGCTGCTCTACCTCTGCTCCTGTC
CGGCAGTCTCGGCTGCTGCCGCCGCGCCGGCCCCTCCGCCACCCCCTCCG
CCACCTCCGCCACCACCGCCACCTGGTGATGCCCCTCGAGGCGGCGGTGC
AACGGCGTCAGCAGCAGCAGGCGGCTCTCGAGGCGGGCAAGCGCTACCGA
GGTCTAGTCGGGATGGAAGCGCAAAGGACGTTGCCGCGACAGCTTCGGCC
GTTGCCGCCGCTGCTGCAGCTGCGGCGGCGGCTGACGCGGGGGGCGGGGG
GAGCACTGGAGGGGAGTCTACTGCAGGGGAAACAACGACCGATCATCTGG
ACCTTATGGATGGCCATCTTACAGACTCTGAACAAGATCACGGATACTCC
CACGAGCGCTACCAACAGCAGCACCAGCACCCGCGGCAGGGGCACCCGCG
GTCAAGCTGGGTCGATCAGGGAGGCGTTGACGGGGGACGAGCGAACGCGT
ATCCCTGGGCGGACGGTGACGACGCTTCCGCGCAATTGAACAGGGCGGGG
AGGGGAGAAGGCAAGGGTTTCGAAGAGAGCTGGAAGGGCGACGGGGAAGG
GGGAGAGGGGAGGCCGTGGAAGCATGAGGATCTGAAGCAGCTGCTGCAGG
GGAAACAACGACCGATCATCTGGACCTTATGGATGGCCATCTTACAGACT
CTGAACAAGATCACGGATACTCCCACGAGCGCTACCAACAGCAGCACCAG
CACCCGCGGCAGGGGCACCCGCGGTCAAGCTGGGTCGATCAGGGAGGCGT
TGACGGGGGACGAGCGAACGCGTATCCCTGGGCGGACGGTGACGACGCTT
CCGCGCAATTGAACAGGGCGGGGAGGGGAGAAGGCAAGGGTTTCGAAGAG
AGCTGGAAGGGCGACGGGGAAGGGGGAGAGGGGAGGCCGTGGAAGCATGA
GGATCTGAAGCAGCTGCTGCAGGACCTCGAAGACACGGAGATAGCCGGAG
CAGGCGGTGCAAAGAGGGGGCGGGGACGCAGACGGTACCGGTCGCCACCC
CCGTCCCGTCCCGGAGCAAGAGGCGGGGAAGGCGTTCTTTCCGGCGAAAC
CGACGAAACCGATGATACCGAAGACGGAGTGCCGAGGAGGCGACCTGGGG
CGGGGTGGGGACCACCACCGAACCAAGGTGACCTCGAAGACACGGAGATA
GCCGGAGCAGGCGGTGCAAAGAGGGGGCGGGGACGCAGACGGTACCGGTC
GCCACCCCCGTCCCGTCCCGGAGCAAGAGGCGGGGAAGGCGTTCTTTCCG
GCGAAACCGACGAAACCGATGATACCGAAGACGGAGTGCCGAGGAGGCGA
CCTGGGGCGGGGTGGGGACCACCACCGAACCAAGGT
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