mRNA_E-fasciculatus_F_contig1082.659.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1082.659.1
Unique NamemRNA_E-fasciculatus_F_contig1082.659.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1082.659.1 vs. uniprot
Match: D8LLF8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF8_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.590e-57
Identity = 87/116 (75.00%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:    1 RPCRRSKLTGMWTDVKPDGNNNNHNMAFPFVQPPQQQVWPVGPIPGRFPQPAPWVVPAGPVVVVPVMPAPAKEXXXXXKKTDGKRGHWEEFISDEDGKKFWRHTGTEEITHSDPFT 348
            RP  RS LTGMWTD+KP  NNNNHN+ FPF+QPPQQQVWPVGPIPGRFPQP PWVVPAGPVVVVPV PA  K+     ++ D K+G WEEFISDEDGKKFWRHTGT++I +SDPFT
Sbjct:   52 RPWWRSNLTGMWTDIKPHVNNNNHNVVFPFMQPPQQQVWPVGPIPGRFPQPPPWVVPAGPVVVVPVKPASPKKE----EEKDDKKGRWEEFISDEDGKKFWRHTGTKKIRNSDPFT 163
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1082.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLF8_ECTSI2.590e-5775.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1082contigE-fasciculatus_F_contig1082:10..360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002480.1
Exons1
Model size351
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.154301-UTR-E-fasciculatus_F_contig1082:9..391622927583.154301-UTR-E-fasciculatus_F_contig1082:9..39Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1082 10..39 +
1695995606.6156368-UTR-E-fasciculatus_F_contig1082:9..391695995606.6156368-UTR-E-fasciculatus_F_contig1082:9..39Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1082 10..39 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.1750743-CDS-E-fasciculatus_F_contig1082:39..3601622927583.1750743-CDS-E-fasciculatus_F_contig1082:39..360Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1082 40..360 +
1695995606.6245892-CDS-E-fasciculatus_F_contig1082:39..3601695995606.6245892-CDS-E-fasciculatus_F_contig1082:39..360Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1082 40..360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1082.659.1prot_E-fasciculatus_F_contig1082.659.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1082 40..360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1082.659.1

>prot_E-fasciculatus_F_contig1082.659.1 ID=prot_E-fasciculatus_F_contig1082.659.1|Name=mRNA_E-fasciculatus_F_contig1082.659.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MWTDVKPDGNNNNHNMAFPFVQPPQQQVWPVGPIPGRFPQPAPWVVPAGP
VVVVPVMPAPAKEEEKEKKKTDGKRGHWEEFISDEDGKKFWRHTGTEEIT
HSDPFT*
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mRNA from alignment at E-fasciculatus_F_contig1082:10..360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1082.659.1 ID=mRNA_E-fasciculatus_F_contig1082.659.1|Name=mRNA_E-fasciculatus_F_contig1082.659.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=351bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1082:10..360+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGACCTTGCAGGCGAAGCAAACTCACAGGAATGTGGACCGACGTCAAGCC
GGACGGCAACAACAACAACCACAACATGGCCTTCCCTTTCGTGCAGCCGC
CGCAGCAGCAGGTCTGGCCGGTCGGGCCGATCCCTGGCCGTTTCCCCCAG
CCGGCTCCCTGGGTCGTCCCGGCGGGGCCGGTGGTCGTGGTCCCGGTGAT
GCCGGCGCCGGCGAAAGAGGAGGAGAAGGAGAAAAAGAAGACAGACGGCA
AGAGGGGGCACTGGGAGGAGTTCATCTCTGATGAGGATGGGAAGAAGTTC
TGGAGGCACACGGGGACGGAGGAGATCACCCACTCCGACCCCTTCACCTG
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1082:10..360+

>mRNA_E-fasciculatus_F_contig1082.659.1 ID=mRNA_E-fasciculatus_F_contig1082.659.1|Name=mRNA_E-fasciculatus_F_contig1082.659.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1082:10..360+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGACCGACGTCAAGCCGGACGGCAACAACAACAACCACAACATGGC
CTTCCCTTTCGTGCAGCCGCCGCAGCAGCAGGTCTGGCCGGTCGGGCCGA
TCCCTGGCCGTTTCCCCCAGCCGGCTCCCTGGGTCGTCCCGGCGGGGCCG
GTGGTCGTGGTCCCGGTGATGCCGGCGCCGGCGAAAGAGGAGGAGAAGGA
GAAAAAGAAGACAGACGGCAAGAGGGGGCACTGGGAGGAGTTCATCTCTG
ATGAGGATGGGAAGAAGTTCTGGAGGCACACGGGGACGGAGGAGATCACC
CACTCCGACCCCTTCACCTGAATGTGGACCGACGTCAAGCCGGACGGCAA
CAACAACAACCACAACATGGCCTTCCCTTTCGTGCAGCCGCCGCAGCAGC
AGGTCTGGCCGGTCGGGCCGATCCCTGGCCGTTTCCCCCAGCCGGCTCCC
TGGGTCGTCCCGGCGGGGCCGGTGGTCGTGGTCCCGGTGATGCCGGCGCC
GGCGAAAGAGGAGGAGAAGGAGAAAAAGAAGACAGACGGCAAGAGGGGGC
ACTGGGAGGAGTTCATCTCTGATGAGGATGGGAAGAAGTTCTGGAGGCAC
ACGGGGACGGAGGAGATCACCCACTCCGACCCCTTCACCTGA
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