mRNA_E-fasciculatus_F_contig10043.58.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10043.58.1
Unique NamemRNA_E-fasciculatus_F_contig10043.58.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: D7G7K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.780e-50
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            ++YNSKVRLGRGFNVEELKEAGIS+KTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV
Sbjct:   62 IKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 149
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A7S4PSP4_9DINO (60S ribosomal protein L13 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PSP4_9DINO)

HSP 1 Score: 118 bits (296), Expect = 3.170e-32
Identity = 61/87 (70.11%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    4 QYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            +Y+SK+R GRGF+++ELKEAGIS+K A TIGIAVDHRRTNKS E+  ANVARL EY+A LI+FPR S   PKKGDSS  E  AATQV
Sbjct:   42 KYSSKIRAGRGFSLDELKEAGISKKLARTIGIAVDHRRTNKSVEAMQANVARLNEYKAKLIVFPRKSNQKPKKGDSSPAETSAATQV 128
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A4S2N1Z8_9PEZI (60S ribosomal protein L13 n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N1Z8_9PEZI)

HSP 1 Score: 114 bits (286), Expect = 4.420e-30
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            ++YN KVR GRGF +EELK AG++RK AL+IGI VDHRR N SEES   NVARLKEYR+NLIIFPR +K  PKKGDSS EE K A QV
Sbjct:   63 IKYNRKVRAGRGFTLEELKAAGVARKFALSIGIPVDHRRRNTSEESLQINVARLKEYRSNLIIFPRKAK-APKKGDSSAEEIKEARQV 149
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A1V9ZEJ6_9STRA (60S ribosomal protein L13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEJ6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.570e-29
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQ 261
            ++Y SKVR GRGF ++ELKEAGISRK ALTIGIAVD+RRTNKS ES  ANV RLK Y++ L++FPR     PK GDS+LEE K A Q
Sbjct:   63 VKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQ 149
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A1Y1KXM0_PHOPY (60S ribosomal protein L13 (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KXM0_PHOPY)

HSP 1 Score: 108 bits (271), Expect = 8.890e-29
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            ++YNSK+RLGRGF +EELK AGI RK A TIGIAVDHRR NKS ES   NV RLKEY++ LI+FP  + + P+KGDSS EE K ATQ+
Sbjct:   31 IRYNSKLRLGRGFTLEELKSAGIHRKEARTIGIAVDHRRVNKSVESLQRNVQRLKEYKSRLILFPLKA-NKPRKGDSSAEELKMATQL 117
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A024TY88_9STRA (60S ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TY88_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.060e-29
Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            ++Y SKVR GRGF ++ELKEAGISRK ALTIG++VD+RRTNKS ES  ANV RLK Y++ L++FPR     PK GDS +EE K ATQ+
Sbjct:   62 IKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQL 149
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A443SMV7_9ACAR (60S ribosomal protein L13 (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SMV7_9ACAR)

HSP 1 Score: 110 bits (276), Expect = 1.560e-28
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            ++YN K+RLGRGF +EELK AGI+RK A TIGI+VDHRR NKS ES   NV RLKEY++ LI+FP+ SK  P KGDSS EEQ  ATQ+
Sbjct:   65 VKYNMKIRLGRGFTLEELKTAGINRKEARTIGISVDHRRVNKSVESLQRNVQRLKEYKSRLILFPKNSKK-PHKGDSSKEEQNLATQL 151
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A8J6ETY2_ELECQ (60S ribosomal protein L13 n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6ETY2_ELECQ)

HSP 1 Score: 110 bits (276), Expect = 1.770e-28
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            ++Y++KVRLGRGF++EELK AGI++K A TIGI+VDHRR NKS ES   NV RLKEYR+ LIIFPR     PKKGDSS EE K ATQ+
Sbjct:   64 IRYHTKVRLGRGFSLEELKAAGINKKVARTIGISVDHRRRNKSTESLQTNVQRLKEYRSKLIIFPR-KPTAPKKGDSSAEELKMATQL 150
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BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A7S2UYA0_9STRA (60S ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.440e-28
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 QYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            +Y+SK RLGRGF++ ELKEAGI +K A TIGIAVDHRRTNKS E+  AN+ARL E++A L++FPR S   PK GDS+ EE   ATQ+
Sbjct:   64 KYSSKTRLGRGFSLAELKEAGIPKKVARTIGIAVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQL 150
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Match: A0A2D4BG90_PYTIN (60S ribosomal protein L13 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG90_PYTIN)

HSP 1 Score: 110 bits (274), Expect = 2.560e-28
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV 264
            ++Y SKVR G+GF++EELKEAGIS+K AL+IGIAVD+RRTNKS ES  ANV RLK Y+A L+IFPR S + PK GDS+ EE   A QV
Sbjct:   63 VKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQV 150
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10043.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7K6_ECTSI2.780e-5096.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4PSP4_9DINO3.170e-3270.1160S ribosomal protein L13 (Fragment) n=1 Tax=Alexa... [more]
A0A4S2N1Z8_9PEZI4.420e-3070.4560S ribosomal protein L13 n=1 Tax=Ascodesmis nigri... [more]
A0A1V9ZEJ6_9STRA6.570e-2966.6760S ribosomal protein L13 n=1 Tax=Thraustotheca cl... [more]
A0A1Y1KXM0_PHOPY8.890e-2965.9160S ribosomal protein L13 (Fragment) n=1 Tax=Photi... [more]
A0A024TY88_9STRA9.060e-2963.6460S ribosomal protein L13 n=4 Tax=Aphanomyces TaxI... [more]
A0A443SMV7_9ACAR1.560e-2865.9160S ribosomal protein L13 (Fragment) n=1 Tax=Lepto... [more]
A0A8J6ETY2_ELECQ1.770e-2867.0560S ribosomal protein L13 n=1 Tax=Eleutherodactylu... [more]
A0A7S2UYA0_9STRA2.440e-2863.2260S ribosomal protein L13 n=1 Tax=Fibrocapsa japon... [more]
A0A2D4BG90_PYTIN2.560e-2865.9160S ribosomal protein L13 n=1 Tax=Pythium insidios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10043contigE-fasciculatus_F_contig10043:339..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue7.9e-39
Seed eggNOG ortholog2880.D7G7K6
Preferred nameRPL13
KEGG koko:K02873,ko:K10755
KEGG Pathwayko03010,ko03030,ko03420,ko03430,map03010,map03030,map03420,map03430
KEGG ModuleM00177,M00179,M00289,M00295
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009506,GO:0009719,GO:0009725,GO:0009735,GO:0009986,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016236,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050896,GO:0055044,GO:0061919,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG4352@1,KOG3295@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L13e
Ec32 orthologEc-22_002060.1
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927506.3823342-CDS-E-fasciculatus_F_contig10043:338..4731622927506.3823342-CDS-E-fasciculatus_F_contig10043:338..473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10043 339..473 -
1695995568.5210836-CDS-E-fasciculatus_F_contig10043:338..4731695995568.5210836-CDS-E-fasciculatus_F_contig10043:338..473Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10043 339..473 -
1622927506.3947625-CDS-E-fasciculatus_F_contig10043:771..9001622927506.3947625-CDS-E-fasciculatus_F_contig10043:771..900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10043 772..900 -
1695995568.5923626-CDS-E-fasciculatus_F_contig10043:771..9001695995568.5923626-CDS-E-fasciculatus_F_contig10043:771..900Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10043 772..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10043.58.1prot_E-fasciculatus_F_contig10043.58.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10043 339..900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10043.58.1

>prot_E-fasciculatus_F_contig10043.58.1 ID=prot_E-fasciculatus_F_contig10043.58.1|Name=mRNA_E-fasciculatus_F_contig10043.58.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp
LQYNSKVRLGRGFNVEELKEAGISRKTALTIGIAVDHRRTNKSEESFAAN
VARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQV
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mRNA from alignment at E-fasciculatus_F_contig10043:339..900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10043.58.1 ID=mRNA_E-fasciculatus_F_contig10043.58.1|Name=mRNA_E-fasciculatus_F_contig10043.58.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=562bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10043:339..900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCAGTACAACTCCAAGGTCCGCCTTGGGCGCGGCTTCAACGTGGAGGA
GCTCAAGGAGGCGGGCATCTCCAGGAAGACGGCTCTCACCATCGGCATCG
CCGTCGACCACCGCCGCACGAACAAGTCGGTGAGTGAAGGAAGGAGAGAC
GGTTGTGACGATGTGTTCGTCCTTGGTTGAGTTGAAACATTTTTTTGCAT
GCACGTTAGTCACCTTCTTCGCGAGGCGGTGTACGGGAAGTCTCTTCGTC
TCGGTTGGTGGTGGGCAGTGGGATGCGGCGCTACCGATTTCGGCATTGTT
GCTGGGCGTAGACATGTAAATGTCAACATCATCCCCACGCAAGAAGAGTG
GCATGGGCCGGACGAAACGAGTTGTTTATCGAGAAGTGATGGACGTGTTT
TGTTTGTGCAATTTTACGCACTCGCAGGAGGAGTCGTTCGCGGCTAACGT
GGCTCGCCTGAAGGAGTACCGCGCCAACCTCATCATCTTCCCCCGCGGCA
GCAAGCACCTGCCCAAGAAGGGAGACTCGTCTCTCGAGGAGCAGAAGGCC
GCCACGCAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10043:339..900-

>mRNA_E-fasciculatus_F_contig10043.58.1 ID=mRNA_E-fasciculatus_F_contig10043.58.1|Name=mRNA_E-fasciculatus_F_contig10043.58.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10043:339..900- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCAGTACAACTCCAAGGTCCGCCTTGGGCGCGGCTTCAACGTGGAGGA
GCTCAAGGAGGCGGGCATCTCCAGGAAGACGGCTCTCACCATCGGCATCG
CCGTCGACCACCGCCGCACGAACAAGTCGTTGCAGTACAACTCCAAGGTC
CGCCTTGGGCGCGGCTTCAACGTGGAGGAGCTCAAGGAGGCGGGCATCTC
CAGGAAGACGGCTCTCACCATCGGCATCGCCGTCGACCACCGCCGCACGA
ACAAGTCGGAGGAGTCGTTCGCGGCTAACGTGGCTCGCCTGAAGGAGTAC
CGCGCCAACCTCATCATCTTCCCCCGCGGCAGCAAGCACCTGCCCAAGAA
GGGAGACTCGTCTCTCGAGGAGCAGAAGGCCGCCACGCAGGTGGAGGAGT
CGTTCGCGGCTAACGTGGCTCGCCTGAAGGAGTACCGCGCCAACCTCATC
ATCTTCCCCCGCGGCAGCAAGCACCTGCCCAAGAAGGGAGACTCGTCTCT
CGAGGAGCAGAAGGCCGCCACGCAGGTG
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