mRNA_E-fasciculatus_F_contig10659.524.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10659.524.1
Unique NamemRNA_E-fasciculatus_F_contig10659.524.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10659.524.1 vs. uniprot
Match: D8LJ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ22_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.340e-74
Identity = 127/138 (92.03%), Postives = 127/138 (92.03%), Query Frame = 1 
Query:   37 MRSVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNAPVASGGNAG--GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLGLLESLVLRAARSRAMHKVS 444
            MR VRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNA  ASG      GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELL LLESLVLRAARSR MHKVS
Sbjct:    1 MRLVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNAR-ASGXXXXXXGPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHKVS 137
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BLAST of mRNA_E-fasciculatus_F_contig10659.524.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 2.320e-57
Identity = 113/131 (86.26%), Postives = 113/131 (86.26%), Query Frame = 1 
Query:   79 LHRLGLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNNAPVASGGNAG-----GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLGLLESLVLRAARSRAMHKVSSAGA 456
            LHRL LVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLN A  ASG         GPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELL LLESLVLRAARSR MHK  S GA
Sbjct:  826 LHRLSLVWCERAAPPLLLADDSGEGGSLWRDCLAIVRNLTLLNTAR-ASGXXXXXXXXXGPDGSAEEAIAKESAALCDNTVVLDGEGMRSALRLAAHPVNAPAKELLALLESLVLRAARSRVMHKAGSGGA 955
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10659.524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ22_ECTSI1.340e-7492.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I3_9PHAE2.320e-5786.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10659contigE-fasciculatus_F_contig10659:3176..4624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004430.1
Exons3
Model size753
Cds size753
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10659.524.1prot_E-fasciculatus_F_contig10659.524.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10659 3176..4624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.9379454-CDS-E-fasciculatus_F_contig10659:3175..35181622927563.9379454-CDS-E-fasciculatus_F_contig10659:3175..3518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10659 3176..3518 -
1695995598.0356371-CDS-E-fasciculatus_F_contig10659:3175..35181695995598.0356371-CDS-E-fasciculatus_F_contig10659:3175..3518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10659 3176..3518 -
1622927563.9545631-CDS-E-fasciculatus_F_contig10659:3882..42141622927563.9545631-CDS-E-fasciculatus_F_contig10659:3882..4214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10659 3883..4214 -
1695995598.0464005-CDS-E-fasciculatus_F_contig10659:3882..42141695995598.0464005-CDS-E-fasciculatus_F_contig10659:3882..4214Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10659 3883..4214 -
1622927563.9715915-CDS-E-fasciculatus_F_contig10659:4546..46241622927563.9715915-CDS-E-fasciculatus_F_contig10659:4546..4624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10659 4547..4624 -
1695995598.0560038-CDS-E-fasciculatus_F_contig10659:4546..46241695995598.0560038-CDS-E-fasciculatus_F_contig10659:4546..4624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10659 4547..4624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10659.524.1

>prot_E-fasciculatus_F_contig10659.524.1 ID=prot_E-fasciculatus_F_contig10659.524.1|Name=mRNA_E-fasciculatus_F_contig10659.524.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=251bp
GGSAGAGSKGVTMRSVRAKFLKDFAPLHRLGLVWCERAAPPLLLADDSGE
GGSLWRDCLAIVRNLTLLNNAPVASGGNAGGPDGSAEEAIAKESAALCDN
TVVLDGEGMRSALRLAAHPVNAPAKELLGLLESLVLRAARSRAMHKVSSA
GAGGGVPLGVGTASTSGSSSSGAGGTMATPAKKPRLAAISPSSASPAGRS
GAGAGGGGRSTTAIGSPGAAGAGGAARQAGGGGASMLIVKKADVEDGILV
E
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mRNA from alignment at E-fasciculatus_F_contig10659:3176..4624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10659.524.1 ID=mRNA_E-fasciculatus_F_contig10659.524.1|Name=mRNA_E-fasciculatus_F_contig10659.524.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1449bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10659:3176..4624- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGCTCGGCGGGGGCGGGCTCCAAGGGCGTGACGATGAGATCGGTCCG
CGCGAAGTTCCTGAAAGATTTCGCTCCGGTGGGTGTCGTATTCTTTAGCG
GGCGGGTGTTGTTGTTGTTGTTGTTGTTACAGGAGGGTGTTACTGCTCTC
TTTTGAGGTAGGGATGGTTGGATGCTTTGTGTATGGCTTGTCGATATCTC
AGGGTCTCAAAGAAAGAAAGAAGACTTTTCACGCCCTCGGGGGAACATTT
TTGTCGTTTCTAGAATGGTAATGTCACGCTCGACCCTTTGTAGTTTGCAT
CTGTTCTTGATCATTTATGAACCGCCCTGTAGACGCGAAATTGGTGTCAC
CAATGGAAGCGTTTTTTTATGCCCACAAACATCACCGTCTCTCTTTCGCT
CCCAAAACAGCTCCACCGCCTGGGCCTGGTGTGGTGCGAGCGGGCGGCGC
CCCCTCTCCTCCTAGCCGACGACTCCGGAGAGGGAGGCAGCCTGTGGCGT
GACTGTCTCGCCATCGTGCGGAACCTGACGCTGTTGAACAACGCCCCGGT
GGCTAGCGGCGGCAACGCGGGGGGTCCGGACGGTTCGGCGGAGGAAGCCA
TCGCGAAGGAGTCGGCGGCCCTGTGCGACAACACGGTCGTCCTCGACGGG
GAAGGGATGCGGTCCGCGCTGAGGCTGGCGGCGCACCCGGTCAACGCGCC
CGCCAAGGAGCTGCTCGGGTTGCTGGAATCTCTCGTTCTCAGGTGTGTGC
GCAAGGTGGGCTGGTGTGCTGTGTTTGTATTGGTCCGTGTCGACAACGCA
CGGGGGGAGGGCGTTGTACTCATGGCCGTGCATGCCGTGCTCGTTAGACG
CAGGGAGGCGGGGGGTTGTTCCAGCATCAGCGTTGCAGGGAAGTCTTGTT
TGTGGTGTGGGGCAGCTGTTTCTGTTCAGCAGCGAGTGTCGTTGGGTTGC
GTTGCCGAACGAAGGGTGGGGGAGAAGGAGAGAGTTAGGAGGGGGGAGAA
AGAAATAGGTCGCCTCTTTTAGGACCCACCAGAGCAGCGGGTTATCCTTG
ACGCCACTTTTTTTTTTTGGTGCATGCCAACGTACGCCGCACGCGATACA
ACGCAGGGCGGCCAGGAGCCGCGCGATGCACAAGGTCAGCAGCGCCGGTG
CAGGCGGCGGAGTCCCTCTCGGCGTCGGCACCGCCAGCACATCCGGTAGC
AGCAGCTCTGGCGCCGGCGGCACCATGGCCACACCGGCGAAGAAGCCGCG
TCTAGCCGCCATCTCGCCTTCATCCGCTAGTCCAGCCGGTCGCAGCGGCG
CCGGCGCTGGCGGCGGTGGAAGGAGCACGACTGCGATCGGCAGTCCCGGC
GCGGCGGGGGCGGGCGGAGCTGCCAGGCAGGCGGGGGGCGGGGGGGCCAG
CATGTTGATCGTGAAGAAAGCGGACGTGGAAGATGGCATCCTCGTGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10659:3176..4624-

>mRNA_E-fasciculatus_F_contig10659.524.1 ID=mRNA_E-fasciculatus_F_contig10659.524.1|Name=mRNA_E-fasciculatus_F_contig10659.524.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10659:3176..4624- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGCTCGGCGGGGGCGGGCTCCAAGGGCGTGACGATGAGATCGGTCCG
CGCGAAGTTCCTGAAAGATTTCGCTCCGGGGGGCTCGGCGGGGGCGGGCT
CCAAGGGCGTGACGATGAGATCGGTCCGCGCGAAGTTCCTGAAAGATTTC
GCTCCGCTCCACCGCCTGGGCCTGGTGTGGTGCGAGCGGGCGGCGCCCCC
TCTCCTCCTAGCCGACGACTCCGGAGAGGGAGGCAGCCTGTGGCGTGACT
GTCTCGCCATCGTGCGGAACCTGACGCTGTTGAACAACGCCCCGGTGGCT
AGCGGCGGCAACGCGGGGGGTCCGGACGGTTCGGCGGAGGAAGCCATCGC
GAAGGAGTCGGCGGCCCTGTGCGACAACACGGTCGTCCTCGACGGGGAAG
GGATGCGGTCCGCGCTGAGGCTGGCGGCGCACCCGGTCAACGCGCCCGCC
AAGGAGCTGCTCGGGTTGCTGGAATCTCTCGTTCTCAGCTCCACCGCCTG
GGCCTGGTGTGGTGCGAGCGGGCGGCGCCCCCTCTCCTCCTAGCCGACGA
CTCCGGAGAGGGAGGCAGCCTGTGGCGTGACTGTCTCGCCATCGTGCGGA
ACCTGACGCTGTTGAACAACGCCCCGGTGGCTAGCGGCGGCAACGCGGGG
GGTCCGGACGGTTCGGCGGAGGAAGCCATCGCGAAGGAGTCGGCGGCCCT
GTGCGACAACACGGTCGTCCTCGACGGGGAAGGGATGCGGTCCGCGCTGA
GGCTGGCGGCGCACCCGGTCAACGCGCCCGCCAAGGAGCTGCTCGGGTTG
CTGGAATCTCTCGTTCTCAGGGCGGCCAGGAGCCGCGCGATGCACAAGGT
CAGCAGCGCCGGTGCAGGCGGCGGAGTCCCTCTCGGCGTCGGCACCGCCA
GCACATCCGGTAGCAGCAGCTCTGGCGCCGGCGGCACCATGGCCACACCG
GCGAAGAAGCCGCGTCTAGCCGCCATCTCGCCTTCATCCGCTAGTCCAGC
CGGTCGCAGCGGCGCCGGCGCTGGCGGCGGTGGAAGGAGCACGACTGCGA
TCGGCAGTCCCGGCGCGGCGGGGGCGGGCGGAGCTGCCAGGCAGGCGGGG
GGCGGGGGGGCCAGCATGTTGATCGTGAAGAAAGCGGACGTGGAAGATGG
CATCCTCGTGGAGGGCGGCCAGGAGCCGCGCGATGCACAAGGTCAGCAGC
GCCGGTGCAGGCGGCGGAGTCCCTCTCGGCGTCGGCACCGCCAGCACATC
CGGTAGCAGCAGCTCTGGCGCCGGCGGCACCATGGCCACACCGGCGAAGA
AGCCGCGTCTAGCCGCCATCTCGCCTTCATCCGCTAGTCCAGCCGGTCGC
AGCGGCGCCGGCGCTGGCGGCGGTGGAAGGAGCACGACTGCGATCGGCAG
TCCCGGCGCGGCGGGGGCGGGCGGAGCTGCCAGGCAGGCGGGGGGCGGGG
GGGCCAGCATGTTGATCGTGAAGAAAGCGGACGTGGAAGATGGCATCCTC
GTGGAG
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