mRNA_E-fasciculatus_F_contig1065.516.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: A0A6H5K655_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K655_9PHAE) HSP 1 Score: 521 bits (1342), Expect = 1.200e-174 Identity = 268/349 (76.79%), Postives = 288/349 (82.52%), Query Frame = 1
Query: 1477 ERPNEDSDAPINTRMAAISGFEGEVVAWSFGDGPDVLRNHDLDFELEVPDLGRNVPALIGLCSSSAEVVDGKQCLLHPVVRCLARNGERFDPNLCLRLPVGDEASTESGSDPESDDENADVAFRAYLESKFTVVTREDASSEWVPMDGTIKQAEGGVFVLEVAVPHFCDFALSQDINVSPGCVEVVPLPKLMGKARRSHFHFVNQGEESLVAHCWGTVKKTGFWDSLRFNLGGGATSAHAEFEGHRQRVDTGNGAVYSVEVPRRDPTNP-ENQVPRVFLGTESITVAWTTQRR-QNARRRLAQVWGSSPMQHKHAMVFGPLLDIDTCQVSNLPVDDGESLGKLVKSKVE 2517
+ P+EDSDA INTRMAAIS FEGEVVAWSFGD PDVLRNHDLDF+LEVPDLGRNVP LIGLCSSSAEVVDGKQCLLHPVVRCLARNGE FDPNL LRLP+GDEAS ESGSD SDD DVA+RAYL SKFTVVTREDASS WVP+DGTI+QAEGGVFVLEVAVPHFCDFALSQ I+V GC+E+VPLPKL GK RRSHFHFVNQGEE+LVAHC G V+KTGFWD + NLG GATSA+ VE P TNP +++V RVFLGTES+TVAWT+QR QNAR R+ QVWG SPMQHKHAMVFGPL IDTCQVSNL VDDGES GKLVKSKVE
Sbjct: 2 DHPDEDSDALINTRMAAISDFEGEVVAWSFGDSPDVLRNHDLDFDLEVPDLGRNVPTLIGLCSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRLPLGDEASMESGSDGASDDXXXDVAYRAYLASKFTVVTREDASSGWVPIDGTIQQAEGGVFVLEVAVPHFCDFALSQGISVPRGCMEIVPLPKLKGKPRRSHFHFVNQGEENLVAHCRGAVEKTGFWDFFKINLGAGATSAN-------------------VEDPAS--TNPNKSEVCRVFLGTESVTVAWTSQRYPQNARHRIPQVWGFSPMQHKHAMVFGPLSGIDTCQVSNLKVDDGESFGKLVKSKVE 329
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: D8LHD4_ECTSI (Putative leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI) HSP 1 Score: 381 bits (979), Expect = 7.070e-115 Identity = 202/357 (56.58%), Postives = 246/357 (68.91%), Query Frame = 1
Query: 1462 ARAIGERPNEDSDAPINTRMAAISGFEGEVVAWSFGDGPDVLRNHDLDFELEVPDLGRNVPALIGLCSSSAEVVDGKQCLLHPVVRCLARNGERFDPNLCLRLPVGDEASTESGSDPESDDENADVAFRAYLESKFTVVTREDASSEWVPMDGTIKQAEGGVFVLEVAVPHFCDFALSQDINVSPGCVEVVPLPKLMGKARRSHFHFVNQGEESLVAHCWGTVKKTGFWDSLRFNLGGGATSAHAEFEGHRQRVDTGNGAVYSVEVPRRDPTNPENQVPRVFLGTESITVAWTTQRRQNA------RRRLAQVWGSSPMQHKHAMVFGPLLDIDTCQVSNLPVDDGESLGKLVKSKV 2514
AR + + + D ++ MA ISGF+G V+AWSFG P VLR++ +FELEVP LGRNVPALIGL SSSAEVVDG++CLLHPVV CLAR+GE FDP LCLR PVGD S ESGSD SDD A+V +RAYLES F+ +TR+ ASSEWVP+DGTI+Q + G+FVLEV V HFCDFAL Q I V G VE+V LP+L K+RRSH+HFVN G E+LV HCWG +K GF +S R LG G AE E R VD VY V+VP +P N+ V G ES+TVA+TTQ+ A L QVWG+ MQHKHAM+FG L + + V NL V+DG ++G+LV+SKV
Sbjct: 418 ARPVATKTRDVRDTTVDGGMAEISGFDGYVMAWSFGQHPAVLRSNGFEFELEVPRLGRNVPALIGLRSSSAEVVDGEKCLLHPVVTCLARSGEVFDPPLCLRFPVGDVNSMESGSDCGSDD--AEVTYRAYLESTFSTLTRKHASSEWVPVDGTIEQTDEGIFVLEVQVSHFCDFALKQAIKVDSGGVELVKLPQLKHKSRRSHYHFVNLGTENLVVHCWGVTRKRGFLESFRLKLGFGLNGGDAEVEATRTLVDAPGTGVYKVDVPGGPVDDPRNEACLVVNGFESLTVAYTTQKTVRAGTLFGSTHELVQVWGTRHMQHKHAMIFGILPE--SALVPNLKVEDGVNVGELVRSKV 770
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: A0A6H5KIZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIZ7_9PHAE) HSP 1 Score: 292 bits (747), Expect = 7.380e-84 Identity = 172/362 (47.51%), Postives = 224/362 (61.88%), Query Frame = 1
Query: 1480 RPNEDSDAPINT-----RMAAISGFEGEVVAWSFGDGPDVLRNHDLDFELEV-PDLGRNVPALIGL--CSSSAEVVDGKQCLLHPVVRCLARNGERFDPNLCLRLPVGDEASTESGSDPESDDENADVAFRAYLESKFTVVTREDASSEWVPMDGTIKQAEGGV-FVLEVAVPHFCDFALSQDINVSPGCVEVVPLPKLMGKARRSHFHFVNQGEESLVAHCWGTVKKTGFWDSLRFN----LGGGATSAHAEFEGHRQRVDTGNGAVYSVEVPRRDPTNPENQVPRVFLGTESITVAWTTQRRQNAR-----RRLAQVWGSSPMQHKHAMVFGPLLDIDTCQVSNLPVDDGESLGKLVKSK 2511
R +ED I T +M+++ F+G+VVAWSFG+ +VLR+ D +FELEV P L +N PAL+GL CS SAE V+G+Q LLH V+ CL R GE+FDP L LR PVGDE S ESGS S D+ A+ A+RA+L+S F+ V R+DASSEWVP+ G I + +GG F LEV + HFCDF LSQ I+V G E++ LPK M +R++H+HF N G + LV H WG +K F + +R N L GG+ A E R VD Y V VP + + QV R F+ E TVAWTTQ R + +L QVWGS+PM H +V G + T ++NL VDDGE +G+LV SK
Sbjct: 210 RYSEDKRLKIGTTHTSSQMSSLQDFKGDVVAWSFGNRAEVLRSPDSEFELEVQPGLNKNYPALVGLGLCSGSAEYVNGEQYLLHCVLTCLTRAGEKFDPPLLLRFPVGDEDSMESGSLDGSQDD-AEEAYRAHLQSTFSAVKRDDASSEWVPIGGDIVRMKGGRDFFLEVKISHFCDFGLSQAIDVEVGYTELIELPKKMFSSRKTHYHFANLGTKPLVFHVWGAGRKEVFVNVVRANAAVDLAGGSVGAEME----RTLVDVPGSGPYEVHVPGEAGSGSKPQVCRKFVDLEKPTVAWTTQERISPSSGVEGHQLVQVWGSTPMLSGHVLVVGAMAPDATPAIANLRVDDGEDVGRLVWSK 566
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 4.270e-15 Identity = 39/59 (66.10%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 1 MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLVLDSNSLEG 177
M STDRDAL LY AT G W T NW + APLSQWHGV VNDQGRVV L L N+L+G
Sbjct: 1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQG 59
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.360e-14 Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 1 MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLVLDSNSLEGTRVIPESLTALSELEELRFINNKLTG 255
M TDRDAL LY ATGG W + NW + A L WHGV VNDQGRVVKL L N+LEG IP +L L L++L +NKL+G
Sbjct: 1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGE--IPATLGKLGNLQQLHLSSNKLSG 83
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 7.080e-14 Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLVLDSNSLEGTRVIPESLTALSELEEL 228
M TDRDAL LY+A GG W NW + A LS+WHG+ +NDQGRVV++ L +N+L+G+ IPE+L ALS+LE L
Sbjct: 51 MPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQGS--IPEALGALSKLERL 124
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.060e-13 Identity = 42/75 (56.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLVLDSNSLEGTRVIPESLTALSELEE 225
M TDRDAL LY ATGG W NW + A L WHGV VNDQGRVVKL L N+LEG IP +L L+ L++
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGE--IPATLGQLANLQQ 73
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.540e-13 Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 1 MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLVLDSNSLEGTRVIPESLTALSELEELRFINNKLTG 255
M S DR AL L+ + GG W NW + A LSQW+GV V GRVV+L L SN+LEGT IPE+L L+EL+ LRF +NKLTG
Sbjct: 1 MASEDRAALVALFRSAGGTRWHRNKNWDTGADLSQWYGVHVKHDGRVVELWLSSNNLEGT--IPEALGVLTELKYLRFNHNKLTG 83
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.840e-13 Identity = 46/74 (62.16%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 1 MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLVLDSNSLEGTRVIPESLTALSELE 222
M TDR AL LY ATGGA W NW +SA LSQWHGV VN QGRVVKL L N+L G IP+ L ALS LE
Sbjct: 71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGP--IPKELGALSRLE 142
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 2.420e-13 Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 1 MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLVLDSNSLEGTRVIPESLTALSELEELRFINNKLTG 255
M S DR AL L+ +TGG W+ NW + A LS+WHGV VN GRVV+L L++N+L GT IPE+L L EL L NKLTG
Sbjct: 34 MSSEDRAALVALFRSTGGTRWILNANWATDADLSKWHGVEVNQHGRVVELDLNNNNLRGT--IPETLRGLKELMVLNLSCNKLTG 116 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1065.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1065.516.1 >prot_E-fasciculatus_F_contig1065.516.1 ID=prot_E-fasciculatus_F_contig1065.516.1|Name=mRNA_E-fasciculatus_F_contig1065.516.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=840bp MGSTDRDALNNLYEATGGAGWVTKTNWGSSAPLSQWHGVAVNDQGRVVKLback to top mRNA from alignment at E-fasciculatus_F_contig1065:7352..16385- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1065.516.1 ID=mRNA_E-fasciculatus_F_contig1065.516.1|Name=mRNA_E-fasciculatus_F_contig1065.516.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=9034bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1065:7352..16385- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1065:7352..16385- >mRNA_E-fasciculatus_F_contig1065.516.1 ID=mRNA_E-fasciculatus_F_contig1065.516.1|Name=mRNA_E-fasciculatus_F_contig1065.516.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=5040bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1065:7352..16385- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |