prot_E_fasciculatus_S2_contig9579.17598.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig9579.17598.1
Unique Name	prot_E_fasciculatus_S2_contig9579.17598.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	638

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig9579.17598.1 vs. uniprot
Match: A0A6H5JRX7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX7_9PHAE)

HSP 1 Score: 783 bits (2022), Expect = 2.200e-278
Identity = 488/629 (77.58%), Postives = 515/629 (81.88%), Query Frame = 0

Query:   20 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASPARATNLPDEVESELFQHVVWLCENGHPMNWDNIKAIAWKLGKMAGIE---DFAATNHWLKRFKARFPTLEARYSHHLRTTQLGKADMAYAERGRDERNHSDATSLGDGGSSAGEGCGGGGSYVVPTDLKVTTAAGGYLALQRAKVEAEASVVRRNQQQQA-GIALNTAGAATPAGTAAGAATST----SAAHQEAQLRLAHGSIVGGLPGNVLGAHPYNSSQLQMGQSPHGPHSLLDSTVRGGVWGQAGTGTLVGSPSTHGEIPPTATPPPNFQLQQQYQHLHLGLHQAGQMGIGGQRMVPIPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLVSGGGVPGVPSGQIDASRMHAVRSQGPTPLQLAGLAGQNMGMGLGGGAHPQQVAMAIDARGGAMTPIYPPAGVGGAGTQAMGMVGPWQAAVGWPEQLMGPWQHVAISQVQGMPQQQLLHPIATPPSSYESQGMLNPGGTGLA-LLQXXXXXXXXXXXXXXXXXXXXXXXXXXXHQGPAPSAWLNTPVGHGYGQHQQPAMLASVARGHAGGDXXXXXXXXXXXXDMRQHSXXXXAG--SAEQDSAQHQEQPPK 637
            MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPAS ARATNLPDEVE+ELFQHV+WLCENGHP NWDNIKAIAWKLGK+AGIE   DFAA+NHWLKRFKARFP LEARYSHHLRTTQL KAD+A A+RGRD+R+HSDATSLGDGG            Y V TDLKVTTAAGGYLAL+RAKVEAEA   RR     A GIALNTAGA TPA T            SAAHQEAQLRLAH S+VGGLPG++L AHPY+ SQLQ+  SP G H LLDSTVRGGVWGQAG G LVGSPST GEIPPT T PPNFQLQQQYQHL LGLHQAGQMGIGGQRMVPIPGQ     XXXXXXXXXXXXXXXXXXX     LVSGGG+PGVP+GQ+DASRM AVRSQGPTP+Q  G+ GQNM MGLGGGAHPQQV MAIDARGGAMT +YPPAGVGGAGTQAMGMVGPWQAAVGWPEQLMGPWQH  ISQVQG+ QQQLLHP ATPPSSYESQG LNP GTGL+ LLQXXXXXXXXXXXXXXXXXXXXX       QGPA SAWLN+P G G GQH QPAMLASVA GHA G  XXXXXX     DM+ ++    AG  SAEQ+S Q QEQ PK
Sbjct:    1 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHPTNWDNIKAIAWKLGKVAGIEGDADFAASNHWLKRFKARFPELEARYSHHLRTTQLSKADIASADRGRDKRDHSDATSLGDGGXXXXXXXXXXXRYFVSTDLKVTTAAGGYLALERAKVEAEAGTARRXXXXXAAGIALNTAGAVTPAATXXXXXXXXXXXXSAAHQEAQLRLAHASMVGGLPGHLLSAHPYSGSQLQIAPSPQGCHRLLDSTVRGGVWGQAGAGVLVGSPSTLGEIPPT-TCPPNFQLQQQYQHLGLGLHQAGQMGIGGQRMVPIPGQLKQEPXXXXXXXXXXXXXXXXXXX-----LVSGGGLPGVPAGQMDASRMQAVRSQGPTPMQFTGMTGQNMNMGLGGGAHPQQVGMAIDARGGAMTTMYPPAGVGGAGTQAMGMVGPWQAAVGWPEQLMGPWQHTTISQVQGIQQQQLLHPTATPPSSYESQGKLNPSGTGLSWLLQXXXXXXXXXXXXXXXXXXXXX-------QGPASSAWLNSPAGLGLGQHPQPAMLASVALGHAVGIGXXXXXXAEPLLDMQHYTAGATAGAGSAEQESVQRQEQSPK 616

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BLAST of mRNA_E_fasciculatus_S2_contig9579.17598.1 vs. uniprot
Match: D8LTF1_ECTSI (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF1_ECTSI)

HSP 1 Score: 374 bits (960), Expect = 3.320e-123
Identity = 204/251 (81.27%), Postives = 212/251 (84.46%), Query Frame = 0

Query:   20 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASPARATNLPDEVESELFQHVVWLCENGHPMNWDNIKAIAWKLGKMAGIEDFAATNHWLKRFKARFPTLEARYSHHLRTTQLGKADMAYAERGRDERNHSDATSLGDGGSSAGEGCGGGGSYVVPTDLKVTTAAGGYLALQRAKVEAEASVVRRNQQQQA-GIALNTAGAATPAGTAAGAAT----------STSAAHQEAQLRLAHGSIVG 259
            MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPAS ARATNLPDEVE+ELFQHV+WLCENGH  NWDNIKAIAWKLGKMAGIEDFAA+NHWLKRFK RFP LEARYSHHLRTTQL KADMAYAERGRDER++SDATSLGDGG S GEG   G SYVVPTDLKVTTAAGGYLAL+RAKVEAEAS  RR+QQQQA GIA NTAGA TPA                  STS+AHQEAQLRLA   I G
Sbjct:    1 MDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASSARATNLPDEVETELFQHVLWLCENGHSTNWDNIKAIAWKLGKMAGIEDFAASNHWLKRFKVRFPALEARYSHHLRTTQLSKADMAYAERGRDERDNSDATSLGDGGCSGGEGXXXGRSYVVPTDLKVTTAAGGYLALERAKVEAEASTARRHQQQQAAGIAPNTAGAVTPAXXXXXXXXXXXXXXXXXXSTSSAHQEAQLRLAPAPIAG 251

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BLAST of mRNA_E_fasciculatus_S2_contig9579.17598.1 vs. uniprot
Match: A0A835YWV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWV1_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.640e-20
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 0

Query:    9 DTTRRDDADASMDDSEVAYIARSKRDVAEHFGVAWSTMQPRLVGKVGGKPASPARATNLPDEVESELFQHVVWLCENGHPMNWDNIKAIAWKLGKMAGIEDFAATNHWLKRFKARFPTLEARYSHHL 135
            +++ R  A+ +M DS+   +  SKR+++E+FG+AWST+QPRLVGKV    +S +R T LPD  E  L Q V+W+ ++   +NWD IK  A  L ++  +E F A + W KR + RFP L AR   +L
Sbjct:  346 ESSTRGSAEPAMVDSDPVCLG-SKREISEYFGIAWSTLQPRLVGKVDQDASSSSRKTRLPDATERSLAQRVLWMVDHRVSVNWDGIKICADALARVQNLEGFTADDTWAKRIRYRFPGLAARSETYL 471

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig9579.17598.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig9579.17598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5JRX7_9PHAE	2.200e-278	77.58	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
D8LTF1_ECTSI	3.320e-123	81.27	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A835YWV1_9STRA	2.640e-20	42.52	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 637..637
None	No IPR available	COILS	Coil	Coil	coord: 537..557
None	No IPR available	COILS	Coil	Coil	coord: 357..386
None	No IPR available	GENE3D	1.10.10.60		coord: 68..124 e-value: 8.6E-8 score: 34.2
None	No IPR available	PANTHER	PTHR14596:SF67	ZINC FINGER PROTEIN YER130C	coord: 201..391
None	No IPR available	PANTHER	PTHR14596	ZINC FINGER PROTEIN	coord: 201..391
IPR006600	HTH CenpB-type DNA-binding domain	PROSITE	PS51253	HTH_CENPB	coord: 59..130 score: 9.565
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 69..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig9579	contig	E_fasciculatus_S2_contig9579:1645..4699 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig9579.17598.1	mRNA_E_fasciculatus_S2_contig9579.17598.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig9579 1645..4699 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig9579.17598.1 ID=prot_E_fasciculatus_S2_contig9579.17598.1|Name=mRNA_E_fasciculatus_S2_contig9579.17598.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=638bp
RGLSVEPSDTTRRDDADASMDDSEVAYIARSKRDVAEHFGVAWSTMQPRL
VGKVGGKPASPARATNLPDEVESELFQHVVWLCENGHPMNWDNIKAIAWK
LGKMAGIEDFAATNHWLKRFKARFPTLEARYSHHLRTTQLGKADMAYAER
GRDERNHSDATSLGDGGSSAGEGCGGGGSYVVPTDLKVTTAAGGYLALQR
AKVEAEASVVRRNQQQQAGIALNTAGAATPAGTAAGAATSTSAAHQEAQL
RLAHGSIVGGLPGNVLGAHPYNSSQLQMGQSPHGPHSLLDSTVRGGVWGQ
AGTGTLVGSPSTHGEIPPTATPPPNFQLQQQYQHLHLGLHQAGQMGIGGQ
RMVPIPGQQQQQELRQEQQQQEQEQEQQQEQQQQQQHLVSGGGVPGVPSG
QIDASRMHAVRSQGPTPLQLAGLAGQNMGMGLGGGAHPQQVAMAIDARGG
AMTPIYPPAGVGGAGTQAMGMVGPWQAAVGWPEQLMGPWQHVAISQVQGM
PQQQLLHPIATPPSSYESQGMLNPGGTGLALLQQQRQQLLRQQYQHHQQA
RQQQQQQQQQHQGPAPSAWLNTPVGHGYGQHQQPAMLASVARGHAGGDGG
GGGGGPESLLDMRQHSAAASAGSAEQDSAQHQEQPPK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR006600	HTH_CenpB_DNA-bd_dom