prot_E_fasciculatus_S2_contig955.17564.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig955.17564.1
Unique Name	prot_E_fasciculatus_S2_contig955.17564.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	263

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 461 bits (1187), Expect = 2.960e-163
Identity = 245/263 (93.16%), Postives = 249/263 (94.68%), Query Frame = 0

Query:    1 MPTARRRSFAIVASALCGAAGLTRVQGFCFVPALGGSNTRCHGATATERPATQQGHQGGGLTMRRGLSYKGKNGPGLTNVGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVELKPAITSREKLRKQALRDWEQRCLEEDRRVEQGYPRREVPLPDKKKMADFGFTVDEFLAMVGRTNSRTAKKPPAYAEEIGYDDXXXXXX-ADLF 262
            MPT RRRSFAI+ASALCGAAGLTRVQGFCFVPAL GSNTRCHGATA ER ATQQ  QGGGLTMRRGLSYKGKNGPGLTN+GRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFC TAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKEL GRVVELKPAITSREK RKQALRDWEQRCLEEDRRVEQGYPRREVPLP+KKKMADFG TVDEFL +VGRTNSRTAKK P YAEEIGYDDXXXXXX ADLF
Sbjct:    1 MPTVRRRSFAIMASALCGAAGLTRVQGFCFVPALTGSNTRCHGATA-ERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQPKYAEEIGYDDXXXXXXXADLF 262

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: W7TTT9_9STRA (Rnp-1 like rna-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.210e-13
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 0

Query:   62 TMRRGLSYKGKNGPGLTNVGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVELKPAI 174
            TM+ G S     G    ++G + + R+ +     P ++M+SNL +  +  ++  F   AG V  VK++       SKGYGFV F +PL+AT A+E L+G EL GR ++++PAI
Sbjct:   34 TMKVGKSSSTGRGK---SIGIINSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAI 143

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: UPI0019B2AFEA (RNA-binding protein n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=UPI0019B2AFEA)

HSP 1 Score: 66.6 bits (161), Expect = 1.510e-10
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0

Query:   98 KVMISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVELKPA 173
            K+ + +L Y+ T++D+A+F   AG V   K++       SKG+GFV+      A +A++TLNGK+LNGR V L  A
Sbjct:    4 KIFVGSLAYTATDDDLAQFFSEAGTVVSAKVIIDRDTNRSKGFGFVEMSNDDEAKVAVDTLNGKDLNGRAVALSEA 79

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: A0A2E4FYC2_9BACT (RNA-binding protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2E4FYC2_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 1.620e-10
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 0

Query:   99 VMISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVELKPA 173
            + + N+ Y  TE+D++   G  G V  V+ ++ +  K  KG+GFV  D    AT AIE+LNGKE+NGR +++  A
Sbjct:    3 IYVGNIPYESTEDDISALFGEHGPVKTVRFIRDYETKRFKGFGFVTMDNQSDATTAIESLNGKEINGRELKISSA 77

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: UPI00168AE54E (RNA-binding protein n=1 Tax=Treponema zioleckii TaxID=331680 RepID=UPI00168AE54E)

HSP 1 Score: 66.2 bits (160), Expect = 3.250e-10
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 0

Query:   98 KVMISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVELKPAI 174
            K+ I NL +S TE  ++   G  G VA   ++K  + + SKG+GFV+    ++AT AI +LNGKE++GR V +  A+
Sbjct:    3 KIYIGNLSFSTTEERLSSIFGEYGEVASATIIKDKFTEMSKGFGFVEMPDDVSATSAISSLNGKEIDGRKVRVNEAV 79

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: A0A448ZIF6_9STRA (RRM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIF6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.420e-10
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 0

Query:   87 RKRVLESEEPCKVMISNLDYSLTENDVAEFC-GTAGA----VAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVEL 170
            RK   +  +PCKV + NL + + +ND+A+F   T G     +   K+++ W    SKGYGF++F  P+ AT+ ++  +GK LNGR V++
Sbjct:   80 RKGTKKFVDPCKVFVGNLPFDVDKNDLAQFVLDTMGQNRMILHSFKVIEDWKTGKSKGYGFIEFTDPIFATVCMDVCDGKMLNGRPVKI 168

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: B8LC97_THAPS (RNA binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC97_THAPS)

HSP 1 Score: 62.4 bits (150), Expect = 8.260e-9
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0

Query:   95 EPCKVMISNLDYSLTENDVAEFCGTA-GAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLN---GKELNGRVVEL 170
            +P KV I NL +  TE DV +   T  G +  VK+V+ W +  SKGYGF+ F +P+ AT A++++N   G  + GR + L
Sbjct:   13 DPNKVFIGNLPFDATEEDVNQLFATHWGRIESVKIVRDWKSGKSKGYGFIQFYEPMVATSAMKSVNEGKGLRIKGRPIRL 92

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: A0A7S3VGL6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGL6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.120e-9
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 0

Query:   95 EPCKVMISNLDYSLTENDVAEFC----GTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGRVVEL 170
            +P K+ I NL +  TE  V +F     G    V  VK++  W    SKGYGF+ F  P+ AT +IE + GK+L GRV+ L
Sbjct:   86 DPNKIFIGNLPFKATEKHVKDFLMKELGNLHNVESVKIISDWKTGISKGYGFIQFMDPIYATSSIEIIKGKKLMGRVIRL 165

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: A0A7S4MXL5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXL5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.730e-8
Identity = 42/112 (37.50%), Postives = 57/112 (50.89%), Query Frame = 0

Query:   62 TMRRGLSYKGKNGPGLTNVGRVVTTRKRVLESEEPCKVMISNLDYSLTENDV----AEFCGTAGA---VAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGR 166
            T R+  S    +   + + GRV T R       +P K  + NL +   E+DV    +++ G   A   V  VK+V+ W    SKGYGFV F  P+ AT A+E LNGKE  GR
Sbjct:   93 TPRKSSSISVTHASRVRSAGRVGTKRY-----VDPAKCFVGNLSFETDEDDVMDLLSDYLGPRVADMNVESVKIVRDWRTGRSKGYGFVQFLDPMMATSAMEGLNGKEFMGR 199

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BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Match: A0A1V5RNQ5_9BACT (RNA recognition motif n=1 Tax=Parcubacteria group bacterium ADurb.Bin305 TaxID=1852941 RepID=A0A1V5RNQ5_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 3.600e-8
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 0

Query:   98 KVMISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELNGR 166
            ++ + +L YS TE+ + +F G AG V    +V   ++  SKG+GFV+      A  AI+TLNGKEL+GR
Sbjct:    4 RLYVGSLSYSTTEDSLKDFFGQAGVVESATIVTDKFSGRSKGFGFVEMSTEEEAQKAIDTLNGKELDGR 72

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig955.17564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JT74_9PHAE	2.960e-163	93.16	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
W7TTT9_9STRA	1.210e-13	36.28	Rnp-1 like rna-binding protein n=2 Tax=Monodopsida...	[more]
UPI0019B2AFEA	1.510e-10	40.79	RNA-binding protein n=1 Tax=Polaromonas sp. TaxID=...	[more]
A0A2E4FYC2_9BACT	1.620e-10	40.00	RNA-binding protein n=2 Tax=Bacteria TaxID=2 RepID...	[more]
UPI00168AE54E	3.250e-10	40.26	RNA-binding protein n=1 Tax=Treponema zioleckii Ta...	[more]
A0A448ZIF6_9STRA	7.420e-10	37.08	RRM domain-containing protein n=1 Tax=Pseudo-nitzs...	[more]
B8LC97_THAPS	8.260e-9	40.00	RNA binding protein (Fragment) n=1 Tax=Thalassiosi...	[more]
A0A7S3VGL6_9STRA	9.120e-9	41.25	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A7S4MXL5_9STRA	2.730e-8	37.50	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A1V5RNQ5_9BACT	3.600e-8	42.03	RNA recognition motif n=1 Tax=Parcubacteria group ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..171 e-value: 1.2E-16 score: 71.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..168 e-value: 1.1E-16 score: 60.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 97..175 score: 15.443
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 69..185 e-value: 9.2E-21 score: 76.4
None	No IPR available	PANTHER	PTHR45735	FAMILY NOT NAMED	coord: 97..184
None	No IPR available	PANTHER	PTHR45735:SF2	CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2	coord: 97..184
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..262
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 23..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..27
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..27 score: 0.536
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 94..183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig955	contig	E_fasciculatus_S2_contig955:17669..22594 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig955.17564.1	mRNA_E_fasciculatus_S2_contig955.17564.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig955 15734..22594 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig955.17564.1 ID=prot_E_fasciculatus_S2_contig955.17564.1|Name=mRNA_E_fasciculatus_S2_contig955.17564.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=263bp
MPTARRRSFAIVASALCGAAGLTRVQGFCFVPALGGSNTRCHGATATERP
ATQQGHQGGGLTMRRGLSYKGKNGPGLTNVGRVVTTRKRVLESEEPCKVM
ISNLDYSLTENDVAEFCGTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLT
ATIAIETLNGKELNGRVVELKPAITSREKLRKQALRDWEQRCLEEDRRVE
QGYPRREVPLPDKKKMADFGFTVDEFLAMVGRTNSRTAKKPPAYAEEIGY
DDDDDDDDADLF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom