prot_E_fasciculatus_S2_contig9158.17225.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig9158.17225.1
Unique Nameprot_E_fasciculatus_S2_contig9158.17225.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length189
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9158.17225.1 vs. uniprot
Match: D7FSP2_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP2_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 5.770e-108
Identity = 158/188 (84.04%), Postives = 170/188 (90.43%), Query Frame = 0 
Query:    1 MGGAAGXXXXXXXXXXRCLAGKVEACHPVRMELYDGEWFVCSWKICNNGGLVFPKHTRLARASEEYSGIGGAEFVMVNPLRPGDEQVVSVMQQAPNHEAWCKDEWALVGEGLGFYDEDEAKAQTPTITVIMRSSGTEKSADMNANLPTLANTVFVAARQRRRSSNYSSGSSHRYSVNLDPPPPPYSFA 188
            M GAAG          RCLAGKVEACHP R+ELYDGEWF CSWKICN+GGLVFP+HTRL+R+S+EYSGIGGAEFVMVNPLRPG+EQVVSVMQQAPNHEAWCKDEWALVGEGL F+DED+AKAQTPTITVIMR SG EKSADMNANLPTLANTVFVAARQR RSS YSSGSSHRYSV+L+PPPPPYSF+
Sbjct:  485 MEGAAGGAPKPPPRRRRCLAGKVEACHPGRIELYDGEWFTCSWKICNSGGLVFPRHTRLSRSSDEYSGIGGAEFVMVNPLRPGEEQVVSVMQQAPNHEAWCKDEWALVGEGLDFWDEDDAKAQTPTITVIMRGSGAEKSADMNANLPTLANTVFVAARQRHRSSTYSSGSSHRYSVSLEPPPPPYSFS 672
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9158.17225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSP2_ECTSI5.770e-10884.04Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032350Next to BRCA1, central domainPFAMPF16158N_BRCA1_IGcoord: 35..109
e-value: 1.7E-6
score: 28.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 21..139
e-value: 1.4E-6
score: 30.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9158contigE_fasciculatus_S2_contig9158:2960..4577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9158.17225.1mRNA_E_fasciculatus_S2_contig9158.17225.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig9158 1032..5862 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig9158.17225.1 ID=prot_E_fasciculatus_S2_contig9158.17225.1|Name=mRNA_E_fasciculatus_S2_contig9158.17225.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=189bp
MGGAAGGAPQPPPRRRRCLAGKVEACHPVRMELYDGEWFVCSWKICNNGG
LVFPKHTRLARASEEYSGIGGAEFVMVNPLRPGDEQVVSVMQQAPNHEAW
CKDEWALVGEGLGFYDEDEAKAQTPTITVIMRSSGTEKSADMNANLPTLA
NTVFVAARQRRRSSNYSSGSSHRYSVNLDPPPPPYSFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR032350N_BRCA1_central