prot_E_fasciculatus_S2_contig8772.16871.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig8772.16871.1
Unique Nameprot_E_fasciculatus_S2_contig8772.16871.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length388
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8772.16871.1 vs. uniprot
Match: D8LFJ4_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ4_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 1.140e-171
Identity = 292/398 (73.37%), Postives = 312/398 (78.39%), Query Frame = 0 
Query:    1 MMAVWDVFPVSRRLQTMQGHSDSVQASTVLTWTGGGKRLASGALDGSVVVWSVSAEGDALDPVFRYSGFCHPYRLVAIGRCLAFTSSDAPTVDALLDGPSSRDASSRDATTPGNQGHHGHRDGGSDDSPLLPVSRGAHISVVDVDSSPSLGVDMNPRCARVATGHRRLQHLVAGASIGSVALSQTESWAADSDSSGIDSDDEDNIYLGGGGAVNFRPPRLCRVLRAARVTSFGQRHAAGVESRPFSDGAGSDGRXXXXXXXX--GALEAEWVSVSGHRPS-PTRDTAPRHDSMHGGGLGGRPFANSNSRTG--------NDDDDDGGAFCTGATFVGRTLFLGYDTGDIWAHRAFDGRRLYRLSALGPLARLTEADGSLFAYSSSGVVSRWSWGDGAR 387
            M+AVWDVFPVS+RLQTMQGHSDSVQ   VLTWTGGGKRLASGALDGSVVVWSVSAEGDALDPVFRY GFCHPYRLVAIGRCLAF+SS+ PTVDAL DGP S  AS  D TT G+QG++GHRDGGSDD PLL VS+GAHISVVDVD+SPS GV   P CARVATG  RLQHLVAGASIGSVALS+ ESW ADSDSS IDSDDE  +Y GG G +  R PRLCR+L AAR TSFGQ  AAGV+SRP          XXXXXXXX  GALEAEWVSVS +R   P R+TAPRHDSMHGGGLG                    + +D D GA CT ATFVGRTLFLGYDTG IWAHRAFDGRRLYRLS  G LARLTEA+GSLFAYS+SGVVSRW W D AR
Sbjct:  297 MIAVWDVFPVSQRLQTMQGHSDSVQ---VLTWTGGGKRLASGALDGSVVVWSVSAEGDALDPVFRYGGFCHPYRLVAIGRCLAFSSSELPTVDALFDGPPSHAASLSD-TTAGHQGNNGHRDGGSDDPPLLAVSKGAHISVVDVDTSPSPGVAEKPGCARVATGLGRLQHLVAGASIGSVALSRMESWTADSDSSSIDSDDEGYVYAGGRG-ITHRAPRLCRILSAARATSFGQFPAAGVKSRPVGGXXXXXXXXXXXXXXXXXGALEAEWVSVSRYRWLWPARETAPRHDSMHGGGLGXXXXXXXXXXXXXXXXXXXXSGEDLDAGALCTCATFVGRTLFLGYDTGYIWAHRAFDGRRLYRLSTPGSLARLTEAEGSLFAYSASGVVSRWRWRDDAR 689
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BLAST of mRNA_E_fasciculatus_S2_contig8772.16871.1 vs. uniprot
Match: A0A6H5JJA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA6_9PHAE)

HSP 1 Score: 395 bits (1016), Expect = 1.650e-134
Identity = 226/315 (71.75%), Postives = 246/315 (78.10%), Query Frame = 0 
Query:   81 CLAFTSSDAPTVDALLDGPSSRDASSRDATTPGNQGHHGHRDGGSDDSPLLPVSRGAHISVVDVDSSPSLGVDMNPRCARVATGHRRLQHLVAGASIGSVALSQTESWAADSDSSGIDSDDEDNIYLGGGGAVNFRPPRLCRVLRAARVTSFGQRHAAGVESRPFSDGAGSDGRXXXXXXXXGALEAEWVSVSGHRPS-PTRDTAPRHDSMHGGGLGGRPFANSNSRTG-------NDDDDDGGAFCTGATFVGRTLFLGYDTGDIWAHRAFDGRRLYRLSALGPLARLTEADGSLFAYSSSGVVSRWSWGDGAR 387
            CLAF+SS+ PTVDAL DG  S  AS RD TT  +QG++GHRDGGSDDSPLL  S+GAHISVVDV +SPSLGV  NP CARVATG  RLQHLVAGASIGSVALS+ ESW ADSDSS I+SDDE  ++ GG G V +R PRLCRVL AARVTSFGQ  AAGVESRP   G G DG         GALEAEWVSVS +R   P R+TAPRHD MHGGGLG +PFA S+SR G       + +D D GA CT ATFVGRTLFLGYDTGDIWAHRAFDGRRLYRLS LG LARLTEA+GSLFAYS+SGVVSRWSWGD AR
Sbjct:    4 CLAFSSSELPTVDALFDGSPSYAASLRD-TTARHQGYNGHRDGGSDDSPLLAESKGAHISVVDVGTSPSLGVAENPGCARVATGLSRLQHLVAGASIGSVALSRMESWTADSDSSSIESDDEGYVHAGGRG-VTYRAPRLCRVLGAARVTSFGQFPAAGVESRP---GGGGDG---------GALEAEWVSVSRYRWRWPARETAPRHDGMHGGGLGRKPFATSSSRKGXXXXXXXSGEDVDAGALCTCATFVGRTLFLGYDTGDIWAHRAFDGRRLYRLSTLGSLARLTEAEGSLFAYSASGVVSRWSWGDDAR 304
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8772.16871.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFJ4_ECTSI1.140e-17173.37WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JJA6_9PHAE1.650e-13471.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 10..52
e-value: 0.0026
score: 27.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..99
e-value: 1.5E-7
score: 32.9
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..61
score: 9.995
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 4..384

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8772contigE_fasciculatus_S2_contig8772:639..6410 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8772.16871.1mRNA_E_fasciculatus_S2_contig8772.16871.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig8772 612..6410 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig8772.16871.1 ID=prot_E_fasciculatus_S2_contig8772.16871.1|Name=mRNA_E_fasciculatus_S2_contig8772.16871.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=388bp
MMAVWDVFPVSRRLQTMQGHSDSVQASTVLTWTGGGKRLASGALDGSVVV
WSVSAEGDALDPVFRYSGFCHPYRLVAIGRCLAFTSSDAPTVDALLDGPS
SRDASSRDATTPGNQGHHGHRDGGSDDSPLLPVSRGAHISVVDVDSSPSL
GVDMNPRCARVATGHRRLQHLVAGASIGSVALSQTESWAADSDSSGIDSD
DEDNIYLGGGGAVNFRPPRLCRVLRAARVTSFGQRHAAGVESRPFSDGAG
SDGRGGGGGGDGGALEAEWVSVSGHRPSPTRDTAPRHDSMHGGGLGGRPF
ANSNSRTGNDDDDDGGAFCTGATFVGRTLFLGYDTGDIWAHRAFDGRRLY
RLSALGPLARLTEADGSLFAYSSSGVVSRWSWGDGAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat