prot_E_fasciculatus_S2_contig6660.14757.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig6660.14757.1
Unique Name	prot_E_fasciculatus_S2_contig6660.14757.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	129

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig6660.14757.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 8.470e-77
Identity = 121/126 (96.03%), Postives = 121/126 (96.03%), Query Frame = 0

Query:    1 MNAGGEVSAAAVPEFDLDAKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLRLGGGDGDEASPAVDVSVVTVNPNQKVILFANTELLASQARGE 126
            MNAGGEVSAAAVPEFDL  KTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGL LGGGDGDEASPAV VSVVTVNPNQKVILFANTE LASQARGE
Sbjct:    1 MNAGGEVSAAAVPEFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLALGGGDGDEASPAVGVSVVTVNPNQKVILFANTEFLASQARGE 126

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BLAST of mRNA_E_fasciculatus_S2_contig6660.14757.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 2.000e-71
Identity = 115/128 (89.84%), Postives = 117/128 (91.41%), Query Frame = 0

Query:    1 MNAGGEVSAAAVPEFDLDAKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLRLGGGDGDEASPAVDVSVVTVNPNQKVILFANTELLASQARGEDL 128
            MN GGEVS A VPEFDL  KTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLEL GKGGL+ GGGDGDEAS AV VSVVTVNPNQKVILFANT+ LASQARGE L
Sbjct:   78 MNTGGEVSTATVPEFDLAEKTVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGGLKSGGGDGDEASRAVGVSVVTVNPNQKVILFANTDFLASQARGETL 205

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BLAST of mRNA_E_fasciculatus_S2_contig6660.14757.1 vs. uniprot
Match: A0A7R9XYF3_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XYF3_9VIRI)

HSP 1 Score: 53.5 bits (127), Expect = 8.230e-6
Identity = 31/71 (43.66%), Postives = 39/71 (54.93%), Query Frame = 0

Query:    9 AAAVPEFDLDAK--TVEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLEL 77
            A A P   +DA   TV   W  V+KQLISVG+ G++ SH  SL   + AH+LVKVK+     D      EL
Sbjct:   49 AEAEPVVAMDATDPTVRAAWDSVRKQLISVGRAGVRQSHANSLAEALRAHSLVKVKLASDAMDAGRAAAEL 119

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig6660.14757.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig6660.14757.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7G6K1_ECTSI	8.470e-77	96.03	CRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JP08_9PHAE	2.000e-71	89.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7R9XYF3_9VIRI	8.230e-6	43.66	Hypothetical protein n=1 Tax=Prasinoderma colonial...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 28..81 e-value: 1.1E-4 score: 22.3
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 31..78

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig6660	contig	E_fasciculatus_S2_contig6660:6135..7396 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig6660.14757.1	mRNA_E_fasciculatus_S2_contig6660.14757.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig6660 6135..7396 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig6660.14757.1 ID=prot_E_fasciculatus_S2_contig6660.14757.1|Name=mRNA_E_fasciculatus_S2_contig6660.14757.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=129bp
MNAGGEVSAAAVPEFDLDAKTVEELWMRVKKQLISVGKGGIKPSHVRSLN
SLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLRLGGGDGDEASPAVDVS
VVTVNPNQKVILFANTELLASQARGEDL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035920	YhbY-like_sf
IPR001890	RNA-binding_CRM