prot_E_fasciculatus_S2_contig664.14737.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig664.14737.1
Unique Nameprot_E_fasciculatus_S2_contig664.14737.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length452
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig664.14737.1 vs. uniprot
Match: A0A6H5KYC8_9PHAE (RNase III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYC8_9PHAE)

HSP 1 Score: 557 bits (1435), Expect = 8.640e-194
Identity = 316/414 (76.33%), Postives = 329/414 (79.47%), Query Frame = 0 
Query:   17 DRVCISTAFHHMYLPFLRIGHGQPVGGTKILADCFEAVLGAVYVDAGGCSDLEPIHAILARVIPSYKHGRRLQEPPQPPH--HRXXXXXGAMPXXXRPPAEEPRKLMNLAHRLTQIAKRDADRVQGDGG-AAHPMQGDAPGSPPLSRAANGSHRNPLEVVREFDGRLREFQRNVLRGGALSFSSRAFAGAFGEEEARFFAAVATGCPERCALLDSVLDGSSMLRKNFDDAPPGAERVVMEVVPVPSELRLQTFTVVEFLLNNVLQPLGGSAEPAKNNPVLRLIRSAPHGDATISFLSSIVTETATNLLLNAHQRATISAGVALAPLPAPSLYSPP------PSNGLPTTASVYMSPPPPGSPMSPLXXXXXXXXXXGRGPPPHLGLPPPRSHLGLPGRKRSSPPHRGGGSWGAA 421
               C S A     LP+LRIGHGQPVGGTKILADCFEAVLGAVYVDAGGCSDLEPIHAILARVIPSYKH RRLQ P QPPH  H      GAM     PPAE PRKLMNLAHRLTQIAKRDADRV+G GG AA PMQGDAP SPPLSRAANGS R+PLEVVREFDGRLR+FQ NVLRGGALSFSSRAFAGAFGE+EARFF+AVATGCPERCALLDSVLDGSSMLRK+FD APPGAERVVMEVV VPSELRLQTFTVVEFLLNNVLQP GGS EPA +NPVLRLIRSAPHGDATI+FLSSIVTETATNLLLNAHQRATISAGVALAPLPAP LY PP                  +SPP                   GRGPPPHLGLP  ++H  LP RKRS P HRGGG WG+A
Sbjct:   94 SHACESFARQLNLLPYLRIGHGQPVGGTKILADCFEAVLGAVYVDAGGCSDLEPIHAILARVIPSYKHDRRLQVPRQPPHPRHPHSHPHGAMEPPPGPPAEGPRKLMNLAHRLTQIAKRDADRVEGGGGRAAQPMQGDAPASPPLSRAANGSDRDPLEVVREFDGRLRDFQGNVLRGGALSFSSRAFAGAFGEDEARFFSAVATGCPERCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPA-DNPVLRLIRSAPHGDATIAFLSSIVTETATNLLLNAHQRATISAGVALAPLPAP-LYGPPVXXXXXXXXXXXXXXXXXLSPP------------HLPGPGGGRGPPPHLGLPSLQNHFSLPRRKRSHP-HRGGGPWGSA 492
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig664.14737.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYC8_9PHAE8.640e-19476.33RNase III domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10coord: 18..81
e-value: 1.4E-5
score: 26.8
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 21..80
NoneNo IPR availablePANTHERPTHR45691FAMILY NOT NAMEDcoord: 84..404
NoneNo IPR availablePANTHERPTHR45691:SF6PROTEIN DIAPHANOUScoord: 84..404
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 32..63
score: 10.544

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig664contigE_fasciculatus_S2_contig664:13169..16480 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig664.14737.1mRNA_E_fasciculatus_S2_contig664.14737.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig664 13169..18030 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig664.14737.1 ID=prot_E_fasciculatus_S2_contig664.14737.1|Name=mRNA_E_fasciculatus_S2_contig664.14737.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=452bp
MHLQPTINHCLFSTGHDRVCISTAFHHMYLPFLRIGHGQPVGGTKILADC
FEAVLGAVYVDAGGCSDLEPIHAILARVIPSYKHGRRLQEPPQPPHHRHP
HPHGAMPPPPRPPAEEPRKLMNLAHRLTQIAKRDADRVQGDGGAAHPMQG
DAPGSPPLSRAANGSHRNPLEVVREFDGRLREFQRNVLRGGALSFSSRAF
AGAFGEEEARFFAAVATGCPERCALLDSVLDGSSMLRKNFDDAPPGAERV
VMEVVPVPSELRLQTFTVVEFLLNNVLQPLGGSAEPAKNNPVLRLIRSAP
HGDATISFLSSIVTETATNLLLNAHQRATISAGVALAPLPAPSLYSPPPS
NGLPTTASVYMSPPPPGSPMSPLSPPPPPGPGGGRGPPPHLGLPPPRSHL
GLPGRKRSSPPHRGGGSWGAAGPRGRGGGWGREGGGGRGRRGGGGITRGR
C*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR036389RNase_III_sf