mRNA_E_fasciculatus_S2_contig9981.17967.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9981.17967.1
Unique NamemRNA_E_fasciculatus_S2_contig9981.17967.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9981.17967.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9981contigE_fasciculatus_S2_contig9981:4646..5020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score79.0
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D7FI08
Model size309
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2DCSR@1,2S5KN@2759
Cds size309
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842639.0003755-CDS-E_fasciculatus_S2_contig9981:4645..48071696842639.0003755-CDS-E_fasciculatus_S2_contig9981:4645..4807Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9981 4646..4807 +
1696842639.0115676-CDS-E_fasciculatus_S2_contig9981:4819..48871696842639.0115676-CDS-E_fasciculatus_S2_contig9981:4819..4887Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9981 4820..4887 +
1696842639.0220613-CDS-E_fasciculatus_S2_contig9981:4941..50201696842639.0220613-CDS-E_fasciculatus_S2_contig9981:4941..5020Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9981 4942..5020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9981.17967.1prot_E_fasciculatus_S2_contig9981.17967.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9981 4646..5020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9981.17967.1

>prot_E_fasciculatus_S2_contig9981.17967.1 ID=prot_E_fasciculatus_S2_contig9981.17967.1|Name=mRNA_E_fasciculatus_S2_contig9981.17967.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=103bp
PPVFEFQASKPAALPSSLLQLGVFVLNLTMGWFGGPITRQFEKRIRLPFS
TTLCLNQSTRGTKLPLDKYSADFRMRWASKSRVKGVSGAGKTITPNVTLV
DL*
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mRNA from alignment at E_fasciculatus_S2_contig9981:4646..5020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9981.17967.1 ID=mRNA_E_fasciculatus_S2_contig9981.17967.1|Name=mRNA_E_fasciculatus_S2_contig9981.17967.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9981:4646..5020+ (Ectocarpus fasciculatus EfasUO2)
CCACCGGTTTTCGAATTTCAAGCGTCTAAACCCGCTGCTCTTCCCAGTTC
GTTGCTGCAGCTGGGAGTCTTTGTTTTGAATCTGACCATGGGCTGGTTTG
GTGGGCCCATCACTCGGCAGTTTGAGAAGCGTATCCGCTTACCTTTTTCG
ACTACCCTGTGCGTGTTCACATAGCTAAACCAAAGTACGCGCGGCACAAA
GCTGCCGTTGGACAAGTACAGTGCAGATTTTCGGATGCGGTGGTAGGATC
GTAGGCGTTGTTTGAGGGGGGCACCGTAGAGCAGGGAGGACGTCAGGGCA
TCGAAAAGCAGGGTGAAGGGTGTTAGTGGAGCGGGGAAGACAATCACGCC
GAACGTGACCCTTGTGGACCTCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9981:4646..5020+

>mRNA_E_fasciculatus_S2_contig9981.17967.1 ID=mRNA_E_fasciculatus_S2_contig9981.17967.1|Name=mRNA_E_fasciculatus_S2_contig9981.17967.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=309bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9981:4646..5020+ (Ectocarpus fasciculatus EfasUO2)
CCACCGGTTTTCGAATTTCAAGCGTCTAAACCCGCTGCTCTTCCCAGTTC
GTTGCTGCAGCTGGGAGTCTTTGTTTTGAATCTGACCATGGGCTGGTTTG
GTGGGCCCATCACTCGGCAGTTTGAGAAGCGTATCCGCTTACCTTTTTCG
ACTACCCTGTGCCTAAACCAAAGTACGCGCGGCACAAAGCTGCCGTTGGA
CAAGTACAGTGCAGATTTTCGGATGCGGTGGGCATCGAAAAGCAGGGTGA
AGGGTGTTAGTGGAGCGGGGAAGACAATCACGCCGAACGTGACCCTTGTG
GACCTCTAA
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