mRNA_E_fasciculatus_S2_contig9981.17966.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9981.17966.1
Unique NamemRNA_E_fasciculatus_S2_contig9981.17966.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9981.17966.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H9_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.690e-53
Identity = 91/133 (68.42%), Postives = 95/133 (71.43%), Query Frame = 1 
Query:    1 MAASVCLVGCMLQEISPFDEDYEVVWDDREACDSTTIGCEVYEAPLVGQFECDGNDFSEFASSVSYFDACIWDGDTRQAAEMFPATSEASSSATSSSECLVGCMLQEISPFDEDYEVVWDGREACDSTTIGCE 399
            MAAS CLVGCMLQ ISPFDED EVVWDDREACDSTTIGCEVYE PLVGQFECD NDF++ +SS S  + C W G  RQA EMFPA S                    ISPFDED EVVWD REACDSTTIGCE
Sbjct:    1 MAASECLVGCMLQGISPFDEDNEVVWDDREACDSTTIGCEVYEEPLVGQFECDDNDFNDLSSSSS-LEECSWAGVVRQAVEMFPAISTG------------------ISPFDEDNEVVWDDREACDSTTIGCE 114
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9981.17966.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.690e-5368.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9981contigE_fasciculatus_S2_contig9981:87..749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_006250.1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842638.9568493-CDS-E_fasciculatus_S2_contig9981:86..3651696842638.9568493-CDS-E_fasciculatus_S2_contig9981:86..365Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9981 87..365 -
1696842638.9692433-CDS-E_fasciculatus_S2_contig9981:629..7491696842638.9692433-CDS-E_fasciculatus_S2_contig9981:629..749Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9981 630..749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9981.17966.1prot_E_fasciculatus_S2_contig9981.17966.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9981 87..749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9981.17966.1

>prot_E_fasciculatus_S2_contig9981.17966.1 ID=prot_E_fasciculatus_S2_contig9981.17966.1|Name=mRNA_E_fasciculatus_S2_contig9981.17966.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=133bp
MAASVCLVGCMLQEISPFDEDYEVVWDDREACDSTTIGCEVYEAPLVGQF
ECDGNDFSEFASSVSYFDACIWDGDTRQAAEMFPATSEASSSATSSSECL
VGCMLQEISPFDEDYEVVWDGREACDSTTIGCE
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mRNA from alignment at E_fasciculatus_S2_contig9981:87..749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9981.17966.1 ID=mRNA_E_fasciculatus_S2_contig9981.17966.1|Name=mRNA_E_fasciculatus_S2_contig9981.17966.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=663bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9981:87..749- (Ectocarpus fasciculatus EfasUO2)
ATGGCCGCCTCGGTGTGTCTTGTGGGATGCATGCTGCAGGAGATCAGCCC
GTTCGATGAAGATTACGAGGTGGTGTGGGACGATCGCGAGGCCTGCGATT
CGACAACGATTGGATGCGAAGTGAGCGCACTCACCTATCCATCAACGGCG
TTTTTCAAGGGCGCACTGTGGGCATCGACTTCAGGAGTAGACGGGTCCAG
CGACTGCACGTGTAGCATGTGCGACCCGTACCCAGGGAGCAGTTATACGA
CGTACATGTCGGAGGAGGTCCCGCTATGGTCGCGAATTCAGTGTTATATT
GCTGCGTCCGAGGAAGCCGGATACGACATGAGCCCTTGCGTGGCCGCCAT
CGTTGACACCGGCACGCTCCCATGTGTAGACGAGGTGTACGAAGCGCCCC
TCGTTGGTCAATTCGAGTGTGATGGCAACGACTTCAGTGAGTTCGCATCT
TCCGTATCCTACTTCGACGCCTGCATCTGGGACGGAGATACTCGGCAGGC
TGCTGAGATGTTCCCTGCCACATCAGAGGCAAGTAGTTCTGCCACAAGCT
CGTCGGAGTGTCTTGTGGGATGCATGCTGCAGGAGATCAGCCCGTTCGAT
GAAGATTACGAGGTGGTGTGGGACGGTCGCGAGGCCTGCGATTCGACAAC
GATTGGATGCGAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9981:87..749-

>mRNA_E_fasciculatus_S2_contig9981.17966.1 ID=mRNA_E_fasciculatus_S2_contig9981.17966.1|Name=mRNA_E_fasciculatus_S2_contig9981.17966.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=399bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9981:87..749- (Ectocarpus fasciculatus EfasUO2)
ATGGCCGCCTCGGTGTGTCTTGTGGGATGCATGCTGCAGGAGATCAGCCC
GTTCGATGAAGATTACGAGGTGGTGTGGGACGATCGCGAGGCCTGCGATT
CGACAACGATTGGATGCGAAGTGTACGAAGCGCCCCTCGTTGGTCAATTC
GAGTGTGATGGCAACGACTTCAGTGAGTTCGCATCTTCCGTATCCTACTT
CGACGCCTGCATCTGGGACGGAGATACTCGGCAGGCTGCTGAGATGTTCC
CTGCCACATCAGAGGCAAGTAGTTCTGCCACAAGCTCGTCGGAGTGTCTT
GTGGGATGCATGCTGCAGGAGATCAGCCCGTTCGATGAAGATTACGAGGT
GGTGTGGGACGGTCGCGAGGCCTGCGATTCGACAACGATTGGATGCGAA
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