mRNA_E_fasciculatus_S2_contig9957.17941.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9957.17941.1
Unique NamemRNA_E_fasciculatus_S2_contig9957.17941.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN40_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 3.420e-44
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 GLHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKWSPDPEAKTPATFLPEHK 249
            GLHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKWSPDPEAKTPATFLPEHK
Sbjct:   16 GLHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKWSPDPEAKTPATFLPEHK 98
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BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4T1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.830e-9
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKWSP----DPEAKTPATFLPE 243
            LH++LLHTF++DA  RKAAE  + +L      ++LL+Q++    V R +RQA AI+LKN V+  W P    D + + P +  P+
Sbjct:    6 LHSILLHTFSTDAEARKAAEEAIGSLHTVRGSIVLLVQLLSSDDVQREIRQAGAISLKNIVQKHWGPMEEHDEQHEVPVSAFPD 89
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BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Aste57867_1650 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KB54_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.410e-9
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKWSP---DPEAKTPATF 234
            LH +LLHTF++DA  RKAAE  +  L  A   ++LL+Q++    V R +RQAAAI+LKN V+  W P     E   P+ F
Sbjct:    8 LHNILLHTFSTDAEARKAAEEAIKNLHTARGSIVLLVQLLSSDDVQREIRQAAAISLKNIVQKHWEPFDGQDEGAAPSAF 87
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4Z2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.190e-8
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKWSPDP--EAKTPATFLPE 243
            LH +LLHTF++DAA R AAE  ++ L      ++LL+Q+     V R ++QAAAI+LKN V   W  DP  +   P    P+
Sbjct:   34 LHNILLHTFSTDAAARAAAEQAVSNLHSVRGSIVLLVQLATSADVQREIQQAAAISLKNLVHRHWGRDPHDDGPEPEAIFPD 115
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BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJD6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.680e-8
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKW 198
            LH++LLHTF++DA+ R AAE  +  L  A   ++LL+Q++   +V R +RQAAAI+LKN V   W
Sbjct:    8 LHSILLHTFSTDASARSAAEEAVNKLHLARGSIVLLVQLLSSDEVQREIRQAAAISLKNIVHRHW 72
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein n=14 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FT43_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-7
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKW 198
            LH++LLHTF++DA  RKAAE  +  L      ++LL+Q++    V R +RQAAAI+LKN V   W
Sbjct:    6 LHSILLHTFSTDADARKAAEEAIKNLHTVRGSIVLLVQLLSSDDVQREIRQAAAISLKNIVHRHW 70
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UXB5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.440e-7
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKW 198
            LH++LLHTF++DA  RKAAE  +  L      ++LL+Q++    V R +RQAAAI+LKN V   W
Sbjct:    6 LHSILLHTFSTDADARKAAEEAVKNLHTVRGSIVLLVQLLSSDDVQREIRQAAAISLKNIVHRHW 70
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AJI8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-7
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKW 198
            LH++LLHTF++DA  RKAAE  +  L      ++LL+Q++    V R +RQAAAI+LKN V   W
Sbjct:    6 LHSILLHTFSTDADARKAAEEAVKNLHTVRGSIVLLVQLLSSGDVQREIRQAAAISLKNIVHRHW 70
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRK7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.450e-7
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKWSPD 207
            LH +LLHT+++DA  R AAE  +  L      ++LL+Q+     V R ++QAAA++LKN V+  W  D
Sbjct:    6 LHTILLHTYSTDATARTAAEQAINNLYSVRGSIVLLVQLATSGDVQREIQQAAAVSLKNLVQKHWGTD 73
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Match: Importin (N-terminal domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJW1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.460e-7
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    4 LHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAVRQAAAIALKNTVRGKW 198
            LH +LLHTF  DA  RKAAEA L  L      ++LL+Q++    V + +RQAA I LKN V   W
Sbjct:    6 LHNILLHTFAVDAEARKAAEAALQNLHTVRGSIVLLMQLISNVDVQKEIRQAAGIQLKNIVSKHW 70
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9957.17941.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
Importin3.420e-44100.00N-terminal domain-containing protein n=2 Tax=Ectoc... [more]
Importin1.830e-940.48N-terminal domain-containing protein n=1 Tax=Aphan... [more]
Aste57867_16503.410e-945.00protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Importin1.190e-841.46N-terminal domain-containing protein n=1 Tax=Achly... [more]
Importin5.680e-847.69N-terminal domain-containing protein n=1 Tax=Aphan... [more]
Importin1.060e-747.69N-terminal domain-containing protein n=14 Tax=Apha... [more]
Importin1.440e-747.69N-terminal domain-containing protein (Fragment) n=... [more]
Importin1.940e-747.69N-terminal domain-containing protein (Fragment) n=... [more]
Importin9.450e-741.18N-terminal domain-containing protein n=1 Tax=Thrau... [more]
Importin9.460e-747.69N-terminal domain-containing protein n=1 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9957contigE_fasciculatus_S2_contig9957:3703..4989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score161.4
Seed ortholog evalue1.8e-37
Seed eggNOG ortholog2880.D8LDH6
Preferred nameNMD5
Model size251
KEGG koko:K20223
KEGG TC1.I.1
KEGG Pathwayko04013,map04013
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031047,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0036094,GO:0040029,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061608,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070922,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons3
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG4581@1,KOG1991@2759
Cds size249
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842636.9809988-CDS-E_fasciculatus_S2_contig9957:3702..37561696842636.9809988-CDS-E_fasciculatus_S2_contig9957:3702..3756Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9957 3703..3756 +
1696842636.9956708-CDS-E_fasciculatus_S2_contig9957:4519..46001696842636.9956708-CDS-E_fasciculatus_S2_contig9957:4519..4600Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9957 4520..4600 +
1696842637.0064929-CDS-E_fasciculatus_S2_contig9957:4873..49871696842637.0064929-CDS-E_fasciculatus_S2_contig9957:4873..4987Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9957 4874..4987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9957.17941.1prot_E_fasciculatus_S2_contig9957.17941.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9957 3703..4987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9957.17941.1

>prot_E_fasciculatus_S2_contig9957.17941.1 ID=prot_E_fasciculatus_S2_contig9957.17941.1|Name=mRNA_E_fasciculatus_S2_contig9957.17941.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=83bp
GLHAVLLHTFTSDAAQRKAAEAQLAALCQAPECLMLLLQIVVEPQVDRAV
RQAAAIALKNTVRGKWSPDPEAKTPATFLPEHK
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mRNA from alignment at E_fasciculatus_S2_contig9957:3703..4989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9957.17941.1 ID=mRNA_E_fasciculatus_S2_contig9957.17941.1|Name=mRNA_E_fasciculatus_S2_contig9957.17941.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1287bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9957:3703..4989+ (Ectocarpus fasciculatus EfasUO2)
GGCCTTCACGCGGTGCTGTTGCACACCTTCACGTCCGATGCTGCTCAACG
GAAGGTATACAAATGTAGAGTTTACACTTTTTGGTGCTGCCGGGAAAACA
CTTGAGAGTTTTGTCTTGTCTCACACGCACACGCCGAAGAACCCCAGTCT
GTCTGGTGTTCTCCGTCTGCAACAGAGTGGTATATACACTAAATAGCAGA
TGCTCTTCCGCTTGTGATCTCTCTCTCTCTCTCTCGTTTATAGCTTACTT
TGTGTCAAGCCGGCCAACGCGGCGAATGCCCTATCATGGACGGCTGGTCA
GTACATATCTCACTTGTTGCCGTAGCCGTCCATTCGTGGCACTACCGGCG
ACAGAGCGATCATCAACTTGACTCCCATCGGACACACGAGTAGGTGACAG
CAGTATTTTCGCTGTTGCGTTGCCCTCTGCCGTCGGCGCTGTCCGTGCCC
TCACACCCATAGCAGCACCTATCACGTGTGTCGCAATGTGTTTGCAAGAT
CTTCGGGACTGTACCAACATGTTGTCTGTCGTTGCCTTGATCCACCCAAT
CATAGTTGATGAGCTTCGCCTTCGCAGGGATTTCCGTTGGAGTAAACATG
TTGGATGAAACATGCGATCGGGGGGGAAGTTGGGTCAAGGTTAAGGTTAG
GGACAGGTTCTGCGTACCCCCCCTGTTTTGTTCCCTCTTGAAGCTTGATT
TCTCACTGAGGCGGTCCCATCGATGATACGCCCACCTACCTCTCGCCATC
TTTCGTCGGTTTGTCTGCGGCGGGTGTCCGGCTCCCCAATGGCTCTGCGG
CTGTTTTTCTCTCGCAGGCTGCCGAGGCCCAGCTGGCTGCCTTGTGCCAG
GCGCCGGAGTGCCTGATGCTGCTGCTCCAGATCGTGGTCGAGCCGCAGGT
GAACCTTTTTTTCTACGCTAGCCTCCTCTGACCGTTTCATACCGCGCATC
CGACACATGCGATTGTCGTATCGGTTTCGAGCTCCCAATCGCGAGCATTC
CGTTGGGGCAAAAAAAGTAAGTCCCCTTTGACTTCGCATCCCGACTGGAG
TTCTCTACACCTCTCGGAGATGAAAACTTTGGGAGGTTTTCCAGAAAGAT
TCTGGCGTTTTTTTTTTTTTTCAGCAGCCCGCGTTCTTGCCGGTGGTGTG
GTATCGGCGGTCAACACACAGGTGGACAGGGCCGTGCGGCAAGCTGCGGC
TATCGCCCTGAAGAACACGGTCCGGGGGAAGTGGTCCCCCGACCCGGAGG
CTAAGACGCCTGCCACCTTCCTACCCGAGCACAAGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9957:3703..4989+

>mRNA_E_fasciculatus_S2_contig9957.17941.1 ID=mRNA_E_fasciculatus_S2_contig9957.17941.1|Name=mRNA_E_fasciculatus_S2_contig9957.17941.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=249bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9957:3703..4989+ (Ectocarpus fasciculatus EfasUO2)
GGCCTTCACGCGGTGCTGTTGCACACCTTCACGTCCGATGCTGCTCAACG
GAAGGCTGCCGAGGCCCAGCTGGCTGCCTTGTGCCAGGCGCCGGAGTGCC
TGATGCTGCTGCTCCAGATCGTGGTCGAGCCGCAGGTGGACAGGGCCGTG
CGGCAAGCTGCGGCTATCGCCCTGAAGAACACGGTCCGGGGGAAGTGGTC
CCCCGACCCGGAGGCTAAGACGCCTGCCACCTTCCTACCCGAGCACAAG
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