mRNA_E_fasciculatus_S2_contig9957.17940.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9957.17940.1
Unique NamemRNA_E_fasciculatus_S2_contig9957.17940.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9957.17940.1 vs.
Match: YihA6, (YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.570e-20
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:   71 FE*EKERQRKTERVYLLLQQ*QPIHPQEQRRSMPSSPSLCGWALALAVAQLL-CSSRGERAVSPTKPRH-VGNPLAFATPPSLFAAPATAVVGGVGMGTR 364
            FE EKER +       L Q   P      RRSMPSS SLCGWALAL++AQLL C++RGE AVSPT+PRH VGNP+AFA  PS F APAT V GGVGMG R
Sbjct:   63 FEGEKERLKNNGEG--LQQITDPSTGDGTRRSMPSS-SLCGWALALSIAQLLLCNARGELAVSPTRPRHYVGNPVAFAALPSFFVAPAT-VSGGVGMGAR 158
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BLAST of mRNA_E_fasciculatus_S2_contig9957.17940.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN91_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.440e-18
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 2 
Query:  167 MPSSPSLCGWALALAVAQLL-CSSRGERAVSPTKPRH-VGNPLAFATPPSLFAAPATAVVGGVGMGTR 364
            MPSS SLCGWALAL++AQLL C++RGERAVSPT PRH VGNPLA A  PS F AP+T V+GGV MG R
Sbjct:    1 MPSS-SLCGWALALSIAQLLLCNARGERAVSPTTPRHDVGNPLASAALPSFFVAPST-VLGGVWMGAR 66
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9957.17940.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
YihA6,4.570e-2063.00YihA/EngB-like GTPase n=1 Tax=Ectocarpus siliculos... [more]
Uncharacterized8.440e-1873.53protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9957contigE_fasciculatus_S2_contig9957:577..1865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842636.9395113-CDS-E_fasciculatus_S2_contig9957:576..7911696842636.9395113-CDS-E_fasciculatus_S2_contig9957:576..791Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9957 577..791 -
1696842636.949755-CDS-E_fasciculatus_S2_contig9957:1714..18651696842636.949755-CDS-E_fasciculatus_S2_contig9957:1714..1865Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9957 1715..1865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9957.17940.1prot_E_fasciculatus_S2_contig9957.17940.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9957 577..1865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9957.17940.1

>prot_E_fasciculatus_S2_contig9957.17940.1 ID=prot_E_fasciculatus_S2_contig9957.17940.1|Name=mRNA_E_fasciculatus_S2_contig9957.17940.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=122bp
AIATTSSHCPRGRGRAEPKTQRTFRVRERETKKNGEGLSALAAVTTDPST
GAEAIDAIFSFPLRLGLGSGGRTAAVQLSRRASGLTNKAATCWKPVSVCD
APVLVCGACYGGCGRGGDGNPR
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mRNA from alignment at E_fasciculatus_S2_contig9957:577..1865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9957.17940.1 ID=mRNA_E_fasciculatus_S2_contig9957.17940.1|Name=mRNA_E_fasciculatus_S2_contig9957.17940.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1289bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9957:577..1865- (Ectocarpus fasciculatus EfasUO2)
GCTATTGCTACGACAAGCTCTCATTGTCCTCGCGGTCGGGGACGTGCGGA
GCCGAAGACGCAGAGGACTTTTCGAGTGAGAGAAAGAGAGACAAAGAAAA
ACGGAGAGGGTCTATCTGCTCTTGCAGCAGTAACAACCGATCCATCCACA
GGTGCAGTACGATCACCATCCAGCAGGGTGCCCCCCTGTGCGTTGCCGCT
GCAACCACACCACAAGAGTCGAACTCAATAATGAGTGTCGAATGTCGAAT
CATGGTTGGCGTTGATGGATGCCGCTGTAGTTTTTAGCTGGCTCCAATCC
TTGACAGCCAACACCGGGGTTCGTGGGAGGCATTCTCAGCCGATTCGAGC
ATGTTACGTGAACCGTTACAACGAACGTTACCGGTGCGGACAGAGTGAGC
GGTGCAGGCAGTAGTGCAGCAGCAGGCAAGATAGACTCTAGACCCCTTCG
TCTTCCCAATGTTATTACAAATTTGAAGCCGTCCAGCGTTTTCTTGCAAA
GGATATGTTGATGCACATACACCAGTACATACACGAGACTCAAATGAACA
TGTATCAACTTCGACGGTTTTCGAGCTACAGCAACAAACAGCACCGCACA
CACACAGCAGTATCTACAGGTTGCCCATTTTACTCTGCTAGCTGGTCGCC
GTAGTGGTTCAGTTGATAACCCCACAACCTTCTAACGTTTGGACTTGAGT
TAGAATTCCTCAGCTCCAAGTACACGATTTGCGTTTTTGCTCGTTTGTGT
CAAAACAATCATAGACAGCGATTGAATCCGTGAGTACTCAATGTTCGACT
TGAACATGAAGCAGGGGATGGAAAAGGCTAGGTCCTTTCTCTCGATAGGA
TGAAGACAATCACCTTTCTCTCGATAGGATGAAGACAAGTACCGCTGAAG
AAGGTGGAGGGGCAAAAAACACTGCTGTGTTGCCTTCCTCCTGTGTCACT
CCGGCTGGGGCGTCCAAACACACAAAGAAAATGTGATGAAAATCGACGTC
CAGATTGTACGGGATAGTAGCACCCAGAAAACACACTGATTCCTCCGCTA
CCCTCTCGTTCTCGTTCCGGGCAGGAGCAGAGGCGATCGATGCCATCTTC
TCCTTCCCTCTGCGGCTGGGCCTTGGCTCTGGCGGTCGCACAGCTGCTGT
GCAGCTCTCGCGGAGAGCGAGCGGTCTCACCAACAAAGCCGCGACATGTT
GGAAACCCGTTAGCGTTTGCGACGCCCCCGTCCTTGTTTGCGGCGCCTGC
TACGGCGGTTGTGGGCGGGGTGGGGATGGGAACCCGAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9957:577..1865-

>mRNA_E_fasciculatus_S2_contig9957.17940.1 ID=mRNA_E_fasciculatus_S2_contig9957.17940.1|Name=mRNA_E_fasciculatus_S2_contig9957.17940.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=366bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9957:577..1865- (Ectocarpus fasciculatus EfasUO2)
GCTATTGCTACGACAAGCTCTCATTGTCCTCGCGGTCGGGGACGTGCGGA
GCCGAAGACGCAGAGGACTTTTCGAGTGAGAGAAAGAGAGACAAAGAAAA
ACGGAGAGGGTCTATCTGCTCTTGCAGCAGTAACAACCGATCCATCCACA
GGAGCAGAGGCGATCGATGCCATCTTCTCCTTCCCTCTGCGGCTGGGCCT
TGGCTCTGGCGGTCGCACAGCTGCTGTGCAGCTCTCGCGGAGAGCGAGCG
GTCTCACCAACAAAGCCGCGACATGTTGGAAACCCGTTAGCGTTTGCGAC
GCCCCCGTCCTTGTTTGCGGCGCCTGCTACGGCGGTTGTGGGCGGGGTGG
GGATGGGAACCCGAGG
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