mRNA_E_fasciculatus_S2_contig9955.17939.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9955.17939.1
Unique NamemRNA_E_fasciculatus_S2_contig9955.17939.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Peptidase_M23 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIK4_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 4.950e-70
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 1
Query:    1 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWYGPQG 324
            VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALV PGD VEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGN YFPVAGKWYGPQG
Sbjct:  216 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVNPGDRVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNSYFPVAGKWYGPQG 323          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FP66_POLGL)

HSP 1 Score: 114 bits (284), Expect = 4.540e-28
Identity = 59/110 (53.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSAL--VKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWYGPQG 324
            VR SE   G+  R  F WN VTVLQ+DG LAEYVHI AGSA   VK GD V  GQP+C SG AGFCPTPHLHL++   EG+ AP++ F      G P+    G+ Y   G
Sbjct:  245 VRDSEQVSGIDVRNFFRWNQVTVLQDDGALAEYVHIQAGSASARVKVGDAVRRGQPICCSGDAGFCPTPHLHLEIHLEEGEAAPSIPFRFQGASG-PFRCEEGERYTAAG 353          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y3E4_9VIRI)

HSP 1 Score: 107 bits (266), Expect = 7.680e-28
Identity = 56/105 (53.33%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    4 RQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWYGP 318
            RQ     G+  R LF WNS+ V    GL+ EYVHI AGSA VK GD V AG  LC SG  GFCP PHLH Q+ EG GD A TV F  +   G  Y+P AG++Y P
Sbjct:    1 RQHVGVSGISVRNLFAWNSIAVEIAGGLVTEYVHIRAGSARVKVGDRVSAGDVLCESGDVGFCPEPHLHFQVTEGGGDKAHTVPFQFMGALGA-YYPRAGEFYHP 104          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y3Q9_9VIRI)

HSP 1 Score: 105 bits (261), Expect = 2.130e-26
Identity = 54/98 (55.10%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   25 GVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWYGP 318
            G+  R LF WNS+ V    GL+ EYVHI AGSA VK GD V AG  LC SG  GFCP PHLH Q+ EG GD A TV F  +   G  Y+P AG++Y P
Sbjct:   65 GISVRNLFAWNSIAVEIAGGLVTEYVHIRAGSARVKVGDRVSAGDVLCESGDVGFCPEPHLHFQVTEGGGDKAHTVPFQFMGALGA-YYPRAGEFYHP 161          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IMD6_SYMPI)

HSP 1 Score: 100 bits (250), Expect = 6.220e-25
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCE 276
            +R  ETA GV  R  F WN +TV Q DG  AEYVHI A ++ +KPGD V  GQ +  SG  GFCP+PHLH+++   EG  A +V FA L  E
Sbjct:   64 IRDGETASGVDVRNFFRWNQITVKQVDGTFAEYVHIKAATSTLKPGDQVRQGQEIAQSGDVGFCPSPHLHVEVHVREGHDADSVPFAFLGSE 155          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Peptidase_M23 (domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FTA5_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 9.130e-25
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWYGPQG 324
            ++Q+ T GG+H   L+ WNS+ +  +DG   EYVH    SA V  GD V  G  LCLSG  GFCP+PHLH+Q+ + +   A T+ FA+    G P+ PVAG +Y   G
Sbjct:  341 IQQANTEGGIHISLLYKWNSMMLKLDDGRFVEYVHTQTDSARVAVGDRVTEGDILCLSGSVGFCPSPHLHIQVHQSDASNADTIMFALKGQGGKPFVPVAGNYYNSYG 448          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812VSG3_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 4.850e-24
Identity = 48/108 (44.44%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWYGPQG 324
            +R +ETA GV  +  F WN +T+ Q DG  AEYVHI A +  +KPGD V  GQ +  SG  GFCPTPHLH+++   EG  A +V F     +G  +    G WY   G
Sbjct:    9 IRDAETASGVDVQNFFSWNQITIAQVDGTFAEYVHIKAATQSLKPGDRVCQGQAIAQSGDVGFCPTPHLHVEVHLREGRDADSVLFGFRGTQGA-FHCEEGTWYAADG 115          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT78_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 5.010e-24
Identity = 51/108 (47.22%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWYGPQG 324
            +  +  AGG+H   L+ WNS++V  EDG L +YVHI  GSA VK GD V  GQ +C SG  GFCP PHLHLQ+     + +PT  F       N   P AG WY P G
Sbjct:  187 IEDTRKAGGIHVSALYAWNSISVELEDGSLVDYVHIRTGSAKVKKGDKVTKGQHICDSGDVGFCPKPHLHLQITLSAQNNSPTTPFHFP----NRLLPTAGGWYLPDG 290          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BV01_9VIRI)

HSP 1 Score: 98.2 bits (243), Expect = 3.850e-23
Identity = 52/96 (54.17%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   25 GVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVAGKWY 312
            G+    LF WNSV +  E GL+AEYVHI  GSA V+ GD V+AG  LC SG  GFCP PHLH Q+ EG GD A TV F  +   G PY   AG+ Y
Sbjct:  131 GIGIGNLFAWNSVAIDIEGGLVAEYVHIRKGSAKVRVGDSVKAGDVLCESGAVGFCPEPHLHFQVTEGGGDMAHTVAFKFVGAMG-PYSVQAGERY 225          
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DR05_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.970e-22
Identity = 53/117 (45.30%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    1 VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVEAGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNP---------YFPVAGKWYGPQG 324
            V+ S  AGG+H   L+ WNS++V Q+D  + +YVHI  GSA VK GD + AG  LC SG  GFCP PHLHLQ+       APTV F+   C   P         + P AG WY   G
Sbjct:  228 VKDSNVAGGIHVSLLYAWNSISVEQKDKKVVDYVHIRQGSARVKIGDIINAGDWLCDSGDVGFCPRPHLHLQITASPAKDAPTVPFSFR-CSPPPPAASKPPLSFVPFAGLWYNKDG 343          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9955.17939.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidase_M234.950e-7097.22domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical4.540e-2853.64protein n=2 Tax=Polarella glacialis TaxID=89957 Re... [more]
Hypothetical7.680e-2853.33protein (Fragment) n=1 Tax=Prasinoderma coloniale ... [more]
Hypothetical2.130e-2655.10protein (Fragment) n=1 Tax=Prasinoderma coloniale ... [more]
Hypothetical6.220e-2551.09protein n=1 Tax=Symbiodinium pilosum TaxID=2952 Re... [more]
Peptidase_M239.130e-2544.44domain-containing protein n=1 Tax=Sphaeroforma arc... [more]
Hypothetical4.850e-2444.44protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=15... [more]
Hypothetical5.010e-2447.22protein n=1 Tax=Amorphochlora amoebiformis TaxID=1... [more]
Hypothetical3.850e-2354.17protein (Fragment) n=1 Tax=Prasinoderma singulare ... [more]
Hypothetical1.970e-2245.30protein n=1 Tax=Lotharella globosa TaxID=91324 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9955contigE_fasciculatus_S2_contig9955:4409..5655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score224.6
Seed ortholog evalue2.3e-56
Seed eggNOG ortholog2880.D7FNZ0
Model size324
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Peptidase family M23
EggNOG OGs2S3BI@2759,COG0739@1
Cds size324
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842636.8981755-CDS-E_fasciculatus_S2_contig9955:4408..46721696842636.8981755-CDS-E_fasciculatus_S2_contig9955:4408..4672Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9955 4409..4672 -
1696842636.9099712-CDS-E_fasciculatus_S2_contig9955:5595..56551696842636.9099712-CDS-E_fasciculatus_S2_contig9955:5595..5655Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9955 5596..5655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9955.17939.1prot_E_fasciculatus_S2_contig9955.17939.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9955 4409..5655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9955.17939.1

>prot_E_fasciculatus_S2_contig9955.17939.1 ID=prot_E_fasciculatus_S2_contig9955.17939.1|Name=mRNA_E_fasciculatus_S2_contig9955.17939.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=108bp
VRQSETAGGVHARGLFHWNSVTVLQEDGLLAEYVHILAGSALVKPGDGVE
AGQPLCLSGGAGFCPTPHLHLQLQEGEGDTAPTVQFAMLDCEGNPYFPVA
GKWYGPQG
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mRNA from alignment at E_fasciculatus_S2_contig9955:4409..5655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9955.17939.1 ID=mRNA_E_fasciculatus_S2_contig9955.17939.1|Name=mRNA_E_fasciculatus_S2_contig9955.17939.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1247bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9955:4409..5655- (Ectocarpus fasciculatus EfasUO2)
GTACGGCAGTCCGAGACTGCCGGCGGAGTACATGCAAGAGGGTTGTTCCA CTGGAATTCGGTGCGTATTTTTCCCAGTGCTGTTTGTACTGCAATCGTTT TCCCGTCGTTCGGCGCCCTCTATGTGATACTACTAGTCTTAAAAGTGCGG TCAAAACAAGTTGGGATTGGTGCTAAGGAGTCTTCCTGGTTCCTATTCGT GCGGGTGCCCGCCATATATTGCGAACGAATCGAACTGGCACATGCACACA CTACACCGCCCTATGCATACTTGTGCGCACATGTGGCGGTTGCCCTGAAG CAGAACCCCATTACCACTTTTTTTGTTTTCCGTCGTGGTGCGAGAAGAGA AAAATGTACTCCGCTGGGAAAAAGTAGGGCCTTGGTATGAGTCAAGCTGT GGAGGTGAACTTTAACAGGGGTCACATCTCCCTAGCATCTGTCGAGGACG ATCCCCTCTTTTCACGCTGGCGTCGACTTTGAGATGCCTGGAAAGCCGAG TTCATACTCCACCACGCCACCGAAAAACGGTGAAGGAGGACTTGTGGGCC TTCTGACAACGTGGCGGGCGTACATAGCGCACCCGTGGATACACGCACGT CAGATTGTGAAGAAGTGAGTCGACTCGCCGACTGCCGGTTGGGTTCCGGT TACCCTAGAAGCCTTCGTCTTGCGTAGCAAACAAGAAATGGCTCATAACA AGGGGGAGGTGGAGGTCGAGGGCGATTCAATTTTTGTCGCACACGTGTTT TGGTACACCGGAAGACTTTGTTTGTGTAAGGTGGCTCTGCAGAGGTTTTC ACCCTTCCGGAAAGGGTTGACGTGGGCGGAGCGAATCATTCACCGGCGCG TGGGCATGAGGAAAAAGGCTACGTTGTCTCGCCTGAATTGGGATGACCAA TTTTCAACGTTTTGAACTATGTCAGATGGCTCGACACATATTCATGCTGG TATTCGCGTCCATGACCGCACCTTTGTGGACAGGTTACCGTCCTGCAAGA GGATGGTCTTCTGGCGGAGTACGTCCACATATTGGCGGGGTCCGCGCTTG TCAAGCCGGGCGATGGAGTTGAAGCGGGGCAACCACTGTGCTTGTCAGGC GGGGCGGGGTTTTGTCCGACACCTCACCTGCATCTCCAGTTGCAGGAAGG CGAGGGTGACACTGCTCCTACAGTGCAGTTCGCTATGCTCGACTGCGAAG GCAACCCATATTTTCCGGTTGCTGGAAAGTGGTACGGCCCCCAGGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9955:4409..5655-

>mRNA_E_fasciculatus_S2_contig9955.17939.1 ID=mRNA_E_fasciculatus_S2_contig9955.17939.1|Name=mRNA_E_fasciculatus_S2_contig9955.17939.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=324bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9955:4409..5655- (Ectocarpus fasciculatus EfasUO2)
GTACGGCAGTCCGAGACTGCCGGCGGAGTACATGCAAGAGGGTTGTTCCA
CTGGAATTCGGTTACCGTCCTGCAAGAGGATGGTCTTCTGGCGGAGTACG
TCCACATATTGGCGGGGTCCGCGCTTGTCAAGCCGGGCGATGGAGTTGAA
GCGGGGCAACCACTGTGCTTGTCAGGCGGGGCGGGGTTTTGTCCGACACC
TCACCTGCATCTCCAGTTGCAGGAAGGCGAGGGTGACACTGCTCCTACAG
TGCAGTTCGCTATGCTCGACTGCGAAGGCAACCCATATTTTCCGGTTGCT
GGAAAGTGGTACGGCCCCCAGGGT
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