mRNA_E_fasciculatus_S2_contig995.17936.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig995.17936.1
Unique NamemRNA_E_fasciculatus_S2_contig995.17936.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig995.17936.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.790e-15
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 AAAAADHHPVTVSQQREFEALQDERHRDHEARFRQLEGEISKATKRKGRR 150
            AA AADHHPVTVS+QREFEALQ+E+HR+HEAR R+LEG+ISKAT RKGRR
Sbjct:  605 AARAADHHPVTVSEQREFEALQNEKHREHEARLRELEGQISKATIRKGRR 654
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BLAST of mRNA_E_fasciculatus_S2_contig995.17936.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.990e-14
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 AAAAADHHPVTVSQQREFEALQDERHRDHEARFRQLEGEISKATKRKGRR 150
            AA A DHHPVTVS+QREFEALQDE+HR+HEAR R+LEG+I KAT R+GRR
Sbjct:  800 AARAVDHHPVTVSEQREFEALQDEKHREHEARLRELEGQIIKATIRQGRR 849
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BLAST of mRNA_E_fasciculatus_S2_contig995.17936.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.820e-13
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 AAAAADHHPVTVSQQREFEALQDERHRDHEARFRQLEGEISKATKRK 141
            AA AAD HPVTVS+QREFEALQDE+HR+HE RFR+LEGEISK  +RK
Sbjct: 1109 AAGAADLHPVTVSEQREFEALQDEKHREHEERFRELEGEISKVARRK 1155
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BLAST of mRNA_E_fasciculatus_S2_contig995.17936.1 vs.
Match: Putative (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.740e-12
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 AAAAADHHPVTVSQQREFEALQDERHRDHEARFRQLEGEISKATKR-KGR 147
            A  AADHHPVTV++QREFEALQ+E+H  HEAR R+LEGEISKATKR KGR
Sbjct: 1095 ATTAADHHPVTVAEQREFEALQNEKHCGHEARLRELEGEISKATKREKGR 1144
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig995.17936.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Hypothetical1.790e-1582.00leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical2.990e-1478.00leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized6.820e-1378.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative1.740e-1278.00Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig995contigE_fasciculatus_S2_contig995:132..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score76.6
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7FHA3
Model size222
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2QVSR@2759,COG4886@1
Cds size153
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842636.509384-CDS-E_fasciculatus_S2_contig995:131..2731696842636.509384-CDS-E_fasciculatus_S2_contig995:131..273Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig995 132..273 +
1696842636.5230055-CDS-E_fasciculatus_S2_contig995:759..7701696842636.5230055-CDS-E_fasciculatus_S2_contig995:759..770Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig995 760..770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842636.5345626-UTR-E_fasciculatus_S2_contig995:770..8381696842636.5345626-UTR-E_fasciculatus_S2_contig995:770..838Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig995 771..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig995.17936.1prot_E_fasciculatus_S2_contig995.17936.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig995 132..770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig995.17936.1

>prot_E_fasciculatus_S2_contig995.17936.1 ID=prot_E_fasciculatus_S2_contig995.17936.1|Name=mRNA_E_fasciculatus_S2_contig995.17936.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=51bp
AAAAADHHPVTVSQQREFEALQDERHRDHEARFRQLEGEISKATKRKGRR
*
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mRNA from alignment at E_fasciculatus_S2_contig995:132..838+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig995.17936.1 ID=mRNA_E_fasciculatus_S2_contig995.17936.1|Name=mRNA_E_fasciculatus_S2_contig995.17936.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=707bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig995:132..838+ (Ectocarpus fasciculatus EfasUO2)
GCGGCGGCAGCGGCTGACCACCATCCGGTGACTGTCTCTCAACAAAGAGA
GTTCGAGGCACTGCAGGACGAAAGACACAGGGACCACGAAGCGAGATTCA
GACAACTCGAGGGAGAGATCAGCAAGGCCACCAAACGAAAGGGTGAGTCA
GCTCGTCTGTTGACGTTTTCCTTTGTAGATTGCTTGGGTTTCCAACTGTC
TCATGGCCACTACTGGGCTGTAGACGAGCACACTGCTCTTTTGCGGCGGC
TAAGGGCGTGATGCTGTTGAATTATACTCTGCACCTAAGGGCTCTTCCCA
TGTCGCAGCTGATCCTGTGCTGTTTCACGCGCTATCTTTGCCCTGTCAAG
GTATGCTTGCCGATGTCAACTACTTCACAGGACGTCTAGGTGGTGGTGGT
TAGGCTGACTTGTTGGATGATCATGGCGGTAGCAAAGTTTTCCGACGACT
CCTGTCGTCCTATATATTTCTATGTCTGGCGTATCTCTGCATTCGCTTTG
CGAATTGCTGATGTTGCTGGACGATTTCTCTTTGAGGGCAAAACGAATTG
CTTGGGTTCTCAGAGCGCCGTTATGAGATGAATGCTCTGTCTGGCGTTCT
CCCGTTTACCTTCTGGCCTTCATCTCAGGACGCCGATGACCCTCCATTCA
CTCGCGAGTGCGAAAGAATGCCCTACAACAGCCCTTGATCGTCGCTCGGA
TGACTTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig995:132..838+

>mRNA_E_fasciculatus_S2_contig995.17936.1 ID=mRNA_E_fasciculatus_S2_contig995.17936.1|Name=mRNA_E_fasciculatus_S2_contig995.17936.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=153bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig995:132..838+ (Ectocarpus fasciculatus EfasUO2)
GCGGCGGCAGCGGCTGACCACCATCCGGTGACTGTCTCTCAACAAAGAGA
GTTCGAGGCACTGCAGGACGAAAGACACAGGGACCACGAAGCGAGATTCA
GACAACTCGAGGGAGAGATCAGCAAGGCCACCAAACGAAAGGGACGCCGA
TGA
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