mRNA_E_fasciculatus_S2_contig9946.17934.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9946.17934.1
Unique NamemRNA_E_fasciculatus_S2_contig9946.17934.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9946.17934.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Z5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 6.750e-23
Identity = 69/107 (64.49%), Postives = 79/107 (73.83%), Query Frame = -3 
Query:    1 CGGSPRSSERPDAAESEETRKLKAAKAVSGQGLLSERRVGAGHRTTVFAGAEEDFVLQQQVVKPSRPMKEDSKAVMMAARKKELAEGQAYDDSVLSVAAAVNRGALN 321
            C GSPRSSER DA ESEE RKL+AA    GQGLL+  RVG GHRT +FAGAEED VLQ+  VK    +K+  KAV+MAARK ++AE    + SVLSVAAAVN GALN
Sbjct:  325 CSGSPRSSERLDA-ESEEARKLRAAN-FRGQGLLNVGRVGTGHRTKIFAGAEEDLVLQE--VKSCGRVKDSPKAVVMAARK-DMAEEHTSNRSVLSVAAAVNLGALN 426
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9946.17934.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.750e-2364.49protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9946contigE_fasciculatus_S2_contig9946:4261..4583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size323
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842636.309509-CDS-E_fasciculatus_S2_contig9946:4260..45601696842636.309509-CDS-E_fasciculatus_S2_contig9946:4260..4560Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9946 4261..4560 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842636.324944-UTR-E_fasciculatus_S2_contig9946:4560..45831696842636.324944-UTR-E_fasciculatus_S2_contig9946:4560..4583Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9946 4561..4583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9946.17934.1prot_E_fasciculatus_S2_contig9946.17934.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9946 4261..4560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9946.17934.1

>prot_E_fasciculatus_S2_contig9946.17934.1 ID=prot_E_fasciculatus_S2_contig9946.17934.1|Name=mRNA_E_fasciculatus_S2_contig9946.17934.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
VQGSAVNRSCYAQDAIVVGLPFSQLFLPRCHHDRFRILLHWSGRLNNLLL
QYEVFFCSGEHGCAVASAYSSLAQQPLSANSFGRFEFSSFFTFSSIWPL*
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mRNA from alignment at E_fasciculatus_S2_contig9946:4261..4583+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9946.17934.1 ID=mRNA_E_fasciculatus_S2_contig9946.17934.1|Name=mRNA_E_fasciculatus_S2_contig9946.17934.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=323bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9946:4261..4583+ (Ectocarpus fasciculatus EfasUO2)
GTTCAAGGCTCCGCGGTTAACCGCAGCTGCTACGCTCAAGACGCTATCGT
CGTAGGCCTGCCCTTCAGCCAGCTCTTTCTTCCTCGCTGCCATCATGACC
GCTTTCGAATCCTCCTTCATTGGTCGGGACGGCTTAACAACCTGCTGCTG
CAGTACGAAGTCTTCTTCTGCTCCGGCGAACACGGTTGTGCGGTGGCCAG
CGCCTACTCTTCTCTCGCTCAACAGCCCCTGTCCGCTAACAGCTTTGGCC
GCTTTGAGTTTTCTAGTTTCTTCACTTTCAGCAGCATCTGGCCTCTCTGA
ACTCCTGGGACTTCCGCCGCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9946:4261..4583+

>mRNA_E_fasciculatus_S2_contig9946.17934.1 ID=mRNA_E_fasciculatus_S2_contig9946.17934.1|Name=mRNA_E_fasciculatus_S2_contig9946.17934.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9946:4261..4583+ (Ectocarpus fasciculatus EfasUO2)
GTTCAAGGCTCCGCGGTTAACCGCAGCTGCTACGCTCAAGACGCTATCGT
CGTAGGCCTGCCCTTCAGCCAGCTCTTTCTTCCTCGCTGCCATCATGACC
GCTTTCGAATCCTCCTTCATTGGTCGGGACGGCTTAACAACCTGCTGCTG
CAGTACGAAGTCTTCTTCTGCTCCGGCGAACACGGTTGTGCGGTGGCCAG
CGCCTACTCTTCTCTCGCTCAACAGCCCCTGTCCGCTAACAGCTTTGGCC
GCTTTGAGTTTTCTAGTTTCTTCACTTTCAGCAGCATCTGGCCTCTCTGA
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