mRNA_E_fasciculatus_S2_contig9930.17926.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9930.17926.1
Unique NamemRNA_E_fasciculatus_S2_contig9930.17926.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9930.17926.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ8_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.030e-26
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  151 KDHPDGHHHRPSITAASRATLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 312
            KDH DGHHHRPSITAASR TLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG
Sbjct:  594 KDHTDGHHHRPSITAASRPTLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 647
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BLAST of mRNA_E_fasciculatus_S2_contig9930.17926.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.070e-25
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:  151 KDHPDGHHHRPSITAASRATLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 312
            KDH +GHHHRPSITAAS++TLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG
Sbjct:  686 KDHAEGHHHRPSITAASKSTLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 739
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BLAST of mRNA_E_fasciculatus_S2_contig9930.17926.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.670e-6
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  211 LQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFDG 312
            LQ+GK+++D+FSLDF +PLSP QAFV AMS FDG
Sbjct:  492 LQMGKLADDYFSLDFNYPLSPFQAFVLAMSAFDG 525
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BLAST of mRNA_E_fasciculatus_S2_contig9930.17926.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1J1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.700e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:  202 RATLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFD 309
            R  +Q G+I+ + FS+DFCWPLSPLQAF  ++S  D
Sbjct:   85 RLFMQFGRIAHNQFSMDFCWPLSPLQAFAISLSSLD 120
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BLAST of mRNA_E_fasciculatus_S2_contig9930.17926.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R6S1_9EURY)

HSP 1 Score: 49.3 bits (116), Expect = 3.950e-5
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:  184 SITAASRATLQVGKISEDHFSLDFCWPLSPLQAFVAAMSIFD 309
            S  A     LQ G++S D F++DF WPLSPLQAF   +S FD
Sbjct:   20 SPDAQDSVLLQFGRVSTDEFTMDFQWPLSPLQAFQICLSSFD 61
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9930.17926.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Tub6.030e-2696.30domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Tub3.070e-2592.59domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Tub5.670e-670.59domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical3.700e-555.56protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Tub3.950e-552.38domain-containing protein n=1 Tax=Methanosarcinale... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9930contigE_fasciculatus_S2_contig9930:4170..5426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size485
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842635.6971068-UTR-E_fasciculatus_S2_contig9930:4169..43391696842635.6971068-UTR-E_fasciculatus_S2_contig9930:4169..4339Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9930 4170..4339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842635.7106626-CDS-E_fasciculatus_S2_contig9930:4339..44291696842635.7106626-CDS-E_fasciculatus_S2_contig9930:4339..4429Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9930 4340..4429 -
1696842635.721609-CDS-E_fasciculatus_S2_contig9930:5201..54261696842635.721609-CDS-E_fasciculatus_S2_contig9930:5201..5426Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9930 5202..5426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9930.17926.1prot_E_fasciculatus_S2_contig9930.17926.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9930 4340..5426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9930.17926.1

>prot_E_fasciculatus_S2_contig9930.17926.1 ID=prot_E_fasciculatus_S2_contig9930.17926.1|Name=mRNA_E_fasciculatus_S2_contig9930.17926.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=105bp
MVAVDASPAAAAAAVGGGGKQGKSAAPVAGRGSRAGGGTNSEAQQTGGGD
KDHPDGHHHRPSITAASRATLQVGKISEDHFSLDFCWPLSPLQAFVAAMS
IFDG*
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mRNA from alignment at E_fasciculatus_S2_contig9930:4170..5426-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9930.17926.1 ID=mRNA_E_fasciculatus_S2_contig9930.17926.1|Name=mRNA_E_fasciculatus_S2_contig9930.17926.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1257bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9930:4170..5426- (Ectocarpus fasciculatus EfasUO2)
ATGGTTGCCGTGGATGCAAGTCCCGCCGCCGCCGCCGCCGCGGTCGGCGG
CGGAGGAAAGCAGGGGAAGAGCGCGGCGCCAGTAGCGGGACGAGGCAGTA
GGGCGGGCGGCGGTACCAATAGCGAAGCGCAGCAGACGGGGGGGGGAGAC
AAAGACCATCCGGATGGACACCACCATCGACCATCGATAACGGCAGCGTC
CAGGGCAACGCTGCAAGTGGGGAAGGTGCGGCGTCGCAAGCTCTCTGGAG
GGGGGGGGGGGGGGGGATTGGATTGTGTACGTAGTTGTGTGTGCTGTTTT
TTTTCTTTGCGCCCAGTACGTTTGTTTTTGATGGCATCGACGACCACTCA
GCCGCCGTCTGTTTTGGGCCGCCTCCGCTCGACGTTGAGGGACGTGAGCA
GAGGGAATTGAAGGAAGGGAGGCGGGCGGAGACGAGTGTGCGTTTTGTGT
ATGCTGCTTTTGATCGTGCGGTGCCCGTGCCTGTGGTCCTGAGGTGTTAC
AGTACGTGTTTATTCATGCCGCCTTGTTCGTGTGCTTTGCATTAACGTCG
ACGCCATGTGTTCGGAACTCAGATGTCACTTCTCGGGTAGGGAAATGACA
AATGATGCCCCCTCGTTCCTCTTCCGGTATCCCGGTACAATCTCCCTAGC
GTGGGCTTCGTTCTTTTGTCCCATTTTCGATAGGTGGTTTTTGCTTCTGT
CGGGGTGTTTTGTGGTAAGCCGGGACAACGGCCTCCCACGTGTAAGTTGT
AGTTTCGTTCGATTTTTCGTTCGTTTCATTTCGGCGATCACGGCCACTCA
CGTTCTCCTTCCCACTCTTCCTCTACGAGCCTTATAACCAGTCCCCGCCT
CCGCCGCCCCTGTGCCTGCTGTCTGTTGTTACCGTTTTCTTCCGTATGCG
TCTCTCCCGTCGTTTGTGTCTCGGGTGGTTGTGCTGCCGCTGTTCTGTAA
CCGCTCGGTTGTTACCATCTCCGACGGCGCTGCTGGTTGTTGTACAGATC
TCCGAAGATCACTTTAGTCTAGACTTTTGCTGGCCGCTGTCCCCCCTGCA
GGCCTTCGTAGCTGCTATGAGCATATTTGACGGGTGAAGTAGGGCGAAAC
ATAGAAACTAGTAGTTTAGAGTAGTTAGGAATAGCGATATATTTACATAA
GTGGAAGCGAGTACCGAGACCGACCATGTTTTCGCTCGTCCCTTTTGCTA
CGCTTGCCTTTTGTCGATAAGTAAGGTCTCTCGACACCACTACGATTGTA
ATCGAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9930:4170..5426-

>mRNA_E_fasciculatus_S2_contig9930.17926.1 ID=mRNA_E_fasciculatus_S2_contig9930.17926.1|Name=mRNA_E_fasciculatus_S2_contig9930.17926.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=315bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9930:4170..5426- (Ectocarpus fasciculatus EfasUO2)
ATGGTTGCCGTGGATGCAAGTCCCGCCGCCGCCGCCGCCGCGGTCGGCGG
CGGAGGAAAGCAGGGGAAGAGCGCGGCGCCAGTAGCGGGACGAGGCAGTA
GGGCGGGCGGCGGTACCAATAGCGAAGCGCAGCAGACGGGGGGGGGAGAC
AAAGACCATCCGGATGGACACCACCATCGACCATCGATAACGGCAGCGTC
CAGGGCAACGCTGCAAGTGGGGAAGATCTCCGAAGATCACTTTAGTCTAG
ACTTTTGCTGGCCGCTGTCCCCCCTGCAGGCCTTCGTAGCTGCTATGAGC
ATATTTGACGGGTGA
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