mRNA_E_fasciculatus_S2_contig993.17924.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig993.17924.1
Unique NamemRNA_E_fasciculatus_S2_contig993.17924.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig993.17924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 8.500e-112
Identity = 174/224 (77.68%), Postives = 193/224 (86.16%), Query Frame = 1 
Query:    1 MRSDLGQQGSAPGSDAAAVRNDSFLDTEREHHHDESILAHDESSAIIMLGSFVAGALVGAVICLRVFRFAPFVVVLLCGAGAAVLTKSDSKAGKISRGVGKWTSDVLLALFRFVREFNHKHQLTGKVKVTVQDAARKAQAEVQKLGICDNVKTRARSLWEQVDKRTAPTDQASIHGAQGQETKSLIMEEPQLGFDDAADALQSASCFSMSSGDEKTVPLKLFDA 672
            MRS    Q SAPG +AAAVRNDS+LDTE+EHHHDES LAHDESSAII+LGSFVAGALVGA++C+RVF FAP VVVLLCGAGAAV TKSDSKAG+ISR VGKWT DV LALFR VREFN+K+QLT KV++T Q+AA K +AEVQ+LGICD VKTRARSLWEQVDKRTAP  Q  I  AQGQ+T SL+MEEPQLGFDDAADAL+S SC S SS DEKTV L+LFDA
Sbjct:    1 MRSYPRHQVSAPGHEAAAVRNDSYLDTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPPIRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSSSEDEKTVRLRLFDA 224
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BLAST of mRNA_E_fasciculatus_S2_contig993.17924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 1.520e-84
Identity = 153/247 (61.94%), Postives = 176/247 (71.26%), Query Frame = 1 
Query:    1 MRSDLGQQGSAPGSDAAAVRNDSFLD---------TEREHHHDESILAHDESSAIIMLGSFVAGALVGAVICLRVFRFAPFVVVLLCGA------------GAAVLTKSDSKAGKISRGVGKWTSDVLLALFRFVREFNHKHQLTGKVKVTVQDAARKAQAEVQKLGICDNVKTRARSLWEQVDKRTAPTDQAS--IHGAQGQETKSLIMEEPQLGFDDAADALQSASCFSMSSGDEKTVPLKLFDA 672
            M+SD   QGSAPGS+AAA R+DS            TE++HH D SIL HDESSAI MLGSFVAGA VG +IC+R+F FAP V +LLCGA             AAV+TKSDSKAG ISR  G + SDVLLALFR VREFN  +QLT KVK TVQ+AA K Q E+QK+GICD+V TRA SLW+QVDKRTAP  Q S  +HGAQGQ+T SL  EEPQ GFD+A DA +SA C   SS +EKT P+KL DA
Sbjct:    1 MQSDPRHQGSAPGSEAAANRDDSHRHAKSFEVDNGTEQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGTISRRAGNFISDVLLALFRGVREFNRTYQLTDKVKATVQEAAGKVQVEMQKVGICDHVMTRACSLWDQVDKRTAPAAQPSKFVHGAQGQDTISLFREEPQPGFDNAGDAPKSAPCSPSSSENEKTAPVKLSDA 247
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BLAST of mRNA_E_fasciculatus_S2_contig993.17924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 3.960e-78
Identity = 127/172 (73.84%), Postives = 141/172 (81.98%), Query Frame = 1 
Query:    1 MRSDLGQQGSAPGSDAAAVRNDSFLDTEREHHHDESILAHDESSAIIMLGSFVAGALVGAVICLRVFRFAPFVVVLLCGAGAAVLTKSDSKAGK----------ISRGVGKWTSDVLLALFRFVREFNHKHQLTGKVKVTVQDAARKAQAEVQKLGICDNVKTRARSLWEQV 486
            M SD   +GSAPG +A AVRND +LDTE+EHHHDES LAHDESSAIIMLGSFVAGAL+GA+IC RVF FAP VVVLLCGAGAAV T SDS+ GK          ISRGVGKWTSDV LALFR VREFN+K+QL  KVK+T Q+AARK +AEVQ++GICD VKTRARSLWEQV
Sbjct:    1 MHSDPRHRGSAPGHEAVAVRNDPYLDTEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
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BLAST of mRNA_E_fasciculatus_S2_contig993.17924.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 2.970e-56
Identity = 113/199 (56.78%), Postives = 136/199 (68.34%), Query Frame = 1 
Query:   76 DTEREHHHDESILAHDESSAIIMLGSFVAGALVGAVICLRVFRFAPFVVVLLCGAGAAVLTKSDSKAGKISRGVGKWTSDVLLALFRFVREFNHKHQLTGKVKVTVQDAARKAQAEVQKLGICDNVKTRARSLWEQVDKRTAPTDQASIHGAQGQETKSLIMEEPQLGFDDAADALQSASCFSMSSGDEKTVPLKLFDA 672
            D E+ H   + ++AHDE+S II+ GSF+AGALVG VIC      AP  VVLL GAGAA LTKSDSK GK SR VGK +SD+LLA+FR  RE+NHKH+LT K KV  ++AA K   +++KLGI DNVK RA SLW+QVDKRTAP  QASI  AQGQ+  S + +  Q+ FD A DA  + S  S SS   K    K FDA
Sbjct:   36 DNEQPH---QEVIAHDEASGIIVFGSFIAGALVGVVIC------APAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDL-SQVTDGTQIPFDGAVDAYVTDS--SSSSSYSKGRKPKSFDA 222
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BLAST of mRNA_E_fasciculatus_S2_contig993.17924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV13_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.940e-25
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  271 KAGKISRGVGKWTSDVLLALFRFVREFNHKHQLTGKVKVTVQDAARKAQAEVQKLGICDNVKTRARSLWEQVDK 492
            K G ISR  G +TSDVLLAL R VRE N   QL+ KVKVTVQ+AARK QAE+QK+GICD+V TRARSLW+QVDK
Sbjct:   20 KVGTISRRAGNFTSDVLLALLRVVREINRTCQLSDKVKVTVQEAARKVQAEMQKVGICDHVMTRARSLWDQVDK 93
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig993.17924.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.860e-23
Identity = 65/117 (55.56%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:    1 MRSDLGQQGSAPGSDAAAVRNDSFLD---------TEREHHHDESILAHDESSAIIMLGSFVAGALVGAVICLRVFRFAPFVVVLLCGA------------GAAVLTKSDSKAGKIS 288
            M+S+   QGSAPGS+AAA R+DS            TE++H+ D SILAHDESSAI MLGSFVAGA VGA+IC+R+F  AP V +LLCGA            GAAV+TKS SK   IS
Sbjct:    1 MQSNPRHQGSAPGSEAAANRDDSCRHAKSFEVDNGTEQQHNRDRSILAHDESSAITMLGSFVAGASVGAMICVRLFVLAPIVFLLLCGACVAVTVVLXXXAGAAVVTKSHSKVESIS 117
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig993.17924.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized8.500e-11277.68protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.520e-8461.94protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.960e-7873.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.970e-5656.78protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8... [more]
Uncharacterized8.940e-2571.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.860e-2355.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig993contigE_fasciculatus_S2_contig993:17437..19855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size675
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003260.1
Cds size675
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842635.5222325-CDS-E_fasciculatus_S2_contig993:17436..177091696842635.5222325-CDS-E_fasciculatus_S2_contig993:17436..17709Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 17437..17709 +
1696842635.5343616-CDS-E_fasciculatus_S2_contig993:18516..186211696842635.5343616-CDS-E_fasciculatus_S2_contig993:18516..18621Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 18517..18621 +
1696842635.545108-CDS-E_fasciculatus_S2_contig993:19010..191241696842635.545108-CDS-E_fasciculatus_S2_contig993:19010..19124Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 19011..19124 +
1696842635.556572-CDS-E_fasciculatus_S2_contig993:19672..198551696842635.556572-CDS-E_fasciculatus_S2_contig993:19672..19855Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig993 19673..19855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig993.17924.1prot_E_fasciculatus_S2_contig993.17924.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig993 17437..19855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig993.17924.1

>prot_E_fasciculatus_S2_contig993.17924.1 ID=prot_E_fasciculatus_S2_contig993.17924.1|Name=mRNA_E_fasciculatus_S2_contig993.17924.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
MRSDLGQQGSAPGSDAAAVRNDSFLDTEREHHHDESILAHDESSAIIMLG
SFVAGALVGAVICLRVFRFAPFVVVLLCGAGAAVLTKSDSKAGKISRGVG
KWTSDVLLALFRFVREFNHKHQLTGKVKVTVQDAARKAQAEVQKLGICDN
VKTRARSLWEQVDKRTAPTDQASIHGAQGQETKSLIMEEPQLGFDDAADA
LQSASCFSMSSGDEKTVPLKLFDA*
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mRNA from alignment at E_fasciculatus_S2_contig993:17437..19855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig993.17924.1 ID=mRNA_E_fasciculatus_S2_contig993.17924.1|Name=mRNA_E_fasciculatus_S2_contig993.17924.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2419bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig993:17437..19855+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCAGTGACCTAGGACAGCAAGGCAGCGCGCCCGGTTCTGATGCAGC
CGCGGTTCGGAACGATTCGTTCCTCGATACCGAGCGAGAACATCACCATG
ATGAATCTATTCTCGCACATGACGAGTCCAGCGCTATCATCATGCTCGGC
TCCTTCGTGGCGGGTGCATTGGTGGGGGCAGTTATCTGCCTACGGGTGTT
CAGGTTCGCGCCTTTTGTGGTCGTGCTTCTCTGCGGGGCTGGGGCTGCGG
TGCTCACCAAGTCAGACAGCAAGGTGTGGGGATTCGGTCGTTAGGGTGCG
ATGCGTCGATTCCCTACCTTTCTACACCATGCACGTACTGTAGTGGTTGG
TAACTGAGGGGATACCCTCGGAACGTGTGGTGACGGCCTACTGCTGTAGA
CACACATGGGCTCTATAAACTAATGCGAGGAAGTTTTGGACTTGCAGATT
CAAGCTGGCAGGACAAGCCCATATCTGTAGTGCAGAGCACATCCATTGAG
GTGCTGCGTCGCAGGATGGCGCGTGGTGAGTAGTCGTGGTGGTTGGACTG
AGTAGGGCAGTGGCCCTTGCCGCATGGGCTACAGTACCTCTCAAACAATC
CAACCTCACTCAAACCGGAGGCCGCATGAACAATATCACCATCGTACTTG
GTCGGCAAACGCAGCAGAGGACTCTGCTGCAAATGGGTAGACTATGCAAA
ACGGGGCAACACTTAGAGTGACACAGTCCTACAACAGTATCGCCCCAGAA
TAAACGCGACACCGGGCAATATTCGAAAACGTTAAGACGAACGATTGGGA
TGGTGGTGCCTGTCTCAGGTGGCTCCACACCTGACCGTTTGTTCGTTGTT
AGGGGAGAGAGGTGGGTGTGCACGATAGTGTACATGACGGGAGGGCCGCC
GGATGCTCCTTTGTCTAGTCTACAGCAGATACGAGCTCTCCTTGCGACTT
GTTAAAACCCCTCCTTGAATCTGCAACTAAAGATTCTCAATTTCTTGTAC
ACCTCAAGAAGAGGCAACGCGCCCGTCTTTTGGCGTTCACACGTACTATT
TGCTTTCTTCAAATTATCTGCCCGCCCCAGGCCGGCAAGATTTCCCGTGG
AGTGGGCAAGTGGACCTCCGACGTTCTCCTAGCCTTGTTTAGGTTCGTTC
GAGAGTTCAACCACAAGCACCAGTTGACGGGCAAGGTGAGGACCATCGCC
TTTCATCAAATTTATTTTCTGCTCTAATGCCTTCGGGATACTTGTGCTGT
GTAGTGGTGCGAATAGAAGGTTTTTTGGCAACACTAATTCTCGTTGTCTA
TGGCCGGGTTATCCGCGATTCCCAAGCACGCTATGGACTATTCGGTAACG
TCAGACTGCACAGGCTTCCGACACAAACGTCCTCTTCGGGCGTGCCCGAC
CTGACCTTTTTCGAACAGTCTCTTCGTTTTTTGTGGGACTTATTAGGTTT
GGTCCCGTCTTAAGTGGTGGTGGAGAAACAGGCTTAGCACAAATTCTCCC
CCGACGTGTCTGCAATTTGACACCAAATAGTAGCGGTAACACTCCAGGAT
GAATTGTTGTGTCTTTCTTGCCAGGTGAAGGTTACCGTGCAAGACGCGGC
GAGGAAGGCACAAGCCGAGGTGCAAAAGCTCGGTATCTGTGACAACGTCA
AGACCAGGGCACGCTCCCTGTGGGAACAAGTCGACAAGGTCAGAGACTCT
TGCTACGTGAATGGACGTGTTGTAGTTGAATCCAAAATTTCATTGCTGCA
GAGTCGGAAAGACAGATATTACGCGCTGCCGTGCTTCTCCAGCCGCTGCG
AGTGAGCATGCCATCAACATGGACATCTTAAGCGTGAACGGTCAGATTCG
GCACAATCCAAGATGAACCTTCGTGAACCAGCTGAGCTCGACCGCGGAGG
GTCAAGGTTATTTGCTCCCACAACCATTCACGGGAATAATACACCGACGA
CGACCCGTAGCACGGCAGGTGTAAAATGCCAAAGTATGCAAAGCTCACCC
CCCCGCCCCTACTCTCACTCGTATGGCCCCCCCATGACCCTTTTGACTAC
CGTCCGACCTGCTTCCTTCTTCTTGCTGGCCACGGTATCCACAAGCGCGA
ACATATGTCTATTTCCTAGGTATACTCCCCTTGAATCGCCTTTCCTACCT
CGCCCATCGCTCTCGTCCTGTCGATGGCAAAAATTCTTATCTCTCACCTA
TCCCACGTGTCGCAAACTTCCTCGTCGCGTTTGCAGCGGACCGCCCCAAC
TGACCAAGCTTCTATCCATGGAGCACAAGGACAGGAGACGAAGAGCCTGA
TAATGGAAGAACCCCAGCTTGGTTTTGACGATGCTGCGGATGCACTCCAA
TCAGCGTCTTGTTTCTCAATGTCCTCGGGAGATGAGAAGACCGTGCCACT
CAAGTTGTTCGACGCTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig993:17437..19855+

>mRNA_E_fasciculatus_S2_contig993.17924.1 ID=mRNA_E_fasciculatus_S2_contig993.17924.1|Name=mRNA_E_fasciculatus_S2_contig993.17924.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig993:17437..19855+ (Ectocarpus fasciculatus EfasUO2)
ATGCGCAGTGACCTAGGACAGCAAGGCAGCGCGCCCGGTTCTGATGCAGC
CGCGGTTCGGAACGATTCGTTCCTCGATACCGAGCGAGAACATCACCATG
ATGAATCTATTCTCGCACATGACGAGTCCAGCGCTATCATCATGCTCGGC
TCCTTCGTGGCGGGTGCATTGGTGGGGGCAGTTATCTGCCTACGGGTGTT
CAGGTTCGCGCCTTTTGTGGTCGTGCTTCTCTGCGGGGCTGGGGCTGCGG
TGCTCACCAAGTCAGACAGCAAGGCCGGCAAGATTTCCCGTGGAGTGGGC
AAGTGGACCTCCGACGTTCTCCTAGCCTTGTTTAGGTTCGTTCGAGAGTT
CAACCACAAGCACCAGTTGACGGGCAAGGTGAAGGTTACCGTGCAAGACG
CGGCGAGGAAGGCACAAGCCGAGGTGCAAAAGCTCGGTATCTGTGACAAC
GTCAAGACCAGGGCACGCTCCCTGTGGGAACAAGTCGACAAGCGGACCGC
CCCAACTGACCAAGCTTCTATCCATGGAGCACAAGGACAGGAGACGAAGA
GCCTGATAATGGAAGAACCCCAGCTTGGTTTTGACGATGCTGCGGATGCA
CTCCAATCAGCGTCTTGTTTCTCAATGTCCTCGGGAGATGAGAAGACCGT
GCCACTCAAGTTGTTCGACGCTTGA
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