mRNA_E_fasciculatus_S2_contig9915.17908.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9915.17908.1
Unique NamemRNA_E_fasciculatus_S2_contig9915.17908.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9915.17908.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNU2_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 7.440e-103
Identity = 177/196 (90.31%), Postives = 182/196 (92.86%), Query Frame = 1 
Query:  175 DGEFEESGGAEWAGKEGWELSEERLEKLRGRLATLRVLKLERAAEMIGLVVDCQKLFRELGPPVENPLQNKV-------CERGFPSLRTEAQTQTSVGLSVFNVHRLKKLREDMREDRELHTERKKEHRLQIESLWEKLSVPERSRQEHLAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREEVSGLLEV 741
            DGEFEESGG EWAGKEGWELSEERLE LRGRLATLRVLKLERAAEMIGLVVDCQKLFRELGPPVENPLQNK+       C    P+LRTEAQTQTSVGLSVFNVHRLKKLREDMREDRELHT+RKKEHRLQIESLWEKLSVPER+RQEHLAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREE+S LLEV
Sbjct:  158 DGEFEESGGPEWAGKEGWELSEERLETLRGRLATLRVLKLERAAEMIGLVVDCQKLFRELGPPVENPLQNKMLMSLDPSCPVDKPALRTEAQTQTSVGLSVFNVHRLKKLREDMREDRELHTQRKKEHRLQIESLWEKLSVPERTRQEHLAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREEISDLLEV 353
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BLAST of mRNA_E_fasciculatus_S2_contig9915.17908.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV4_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 4.720e-57
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:  391 CERGFPSLRTEAQTQTSVGLSVFNVHRLKKLREDMREDRELHTERKKEHRLQIESLWEKLSVPERSRQEHLAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREEVSGLLE 738
            C    P+LRTEAQTQTSVGLSVFNVHRLKKLREDMREDRELHT+RKKEHRLQIESLWEKLSVPER+RQEHLAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREE+S LLE
Sbjct:    9 CPVDKPALRTEAQTQTSVGLSVFNVHRLKKLREDMREDRELHTQRKKEHRLQIESLWEKLSVPERTRQEHLAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREEISDLLE 124
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BLAST of mRNA_E_fasciculatus_S2_contig9915.17908.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRS3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.010e-6
Identity = 53/201 (26.37%), Postives = 93/201 (46.27%), Query Frame = 1 
Query:  151 ELDYCCTADGEFEESGGAEWAGKEGWELSEERLEKLRGRLATLRVLKLERAAEMIGLVVDCQKLFRELGPPVENPLQNKVC-------ERGFPSLRTEAQTQTSVGLSVFNVHRLKKLREDMREDRELHTERKKEHRLQIESLWEKLSVPERSRQEHLAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREEVSGL 732
            EL +     G+  ++  AEW   E   L+ ERL+  + +   L     +R   +  LV   Q L  EL  P    L N++          G P L+T  +T +SVG+    +  L    E++   R    E+ ++   +I  LW++L + +  +     +  G+    ++  E+EL RLRKLK EK+ +++ A+R ++  L
Sbjct:  133 ELVHMSMVLGDDSDADLAEWRDLES-SLTNERLQAFKDKKTELNKATEDRMQTVASLVSTVQDLMEELKIPAATALDNRILGSLAIPSSTGVPVLQTTERTASSVGIDRAALDELAAKHEELITQRNTRREKLEKMGEEILDLWQQLDIGKDEQDVFAKSVDGMGLQTLEAGETELNRLRKLKLEKMGELVLASRAKIREL 332
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9915.17908.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized7.440e-10390.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.720e-5792.24protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized6.010e-626.37protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRS3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9915contigE_fasciculatus_S2_contig9915:471..5131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score328.9
Seed ortholog evalue2e-87
Seed eggNOG ortholog2880.D7FNU2
Model size767
KEGG koko:K16732
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.microtubule binding
EggNOG OGsKOG4302@1,KOG4302@2759
Cds size765
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842633.9923213-CDS-E_fasciculatus_S2_contig9915:470..6441696842633.9923213-CDS-E_fasciculatus_S2_contig9915:470..644Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9915 471..644 +
1696842634.0036814-CDS-E_fasciculatus_S2_contig9915:1138..13691696842634.0036814-CDS-E_fasciculatus_S2_contig9915:1138..1369Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9915 1139..1369 +
1696842634.0133169-CDS-E_fasciculatus_S2_contig9915:3117..32101696842634.0133169-CDS-E_fasciculatus_S2_contig9915:3117..3210Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9915 3118..3210 +
1696842634.0238822-CDS-E_fasciculatus_S2_contig9915:4061..41571696842634.0238822-CDS-E_fasciculatus_S2_contig9915:4061..4157Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9915 4062..4157 +
1696842634.0337565-CDS-E_fasciculatus_S2_contig9915:4960..51311696842634.0337565-CDS-E_fasciculatus_S2_contig9915:4960..5131Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9915 4961..5131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9915.17908.1prot_E_fasciculatus_S2_contig9915.17908.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9915 471..5131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9915.17908.1

>prot_E_fasciculatus_S2_contig9915.17908.1 ID=prot_E_fasciculatus_S2_contig9915.17908.1|Name=mRNA_E_fasciculatus_S2_contig9915.17908.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=255bp
GHALRPAGKPGDDAGQLEDAAGRPWPGGRKHRQGDGNHQREHGPKTGGKP
ELDYCCTADGEFEESGGAEWAGKEGWELSEERLEKLRGRLATLRVLKLER
AAEMIGLVVDCQKLFRELGPPVENPLQNKVCERGFPSLRTEAQTQTSVGL
SVFNVHRLKKLREDMREDRELHTERKKEHRLQIESLWEKLSVPERSRQEH
LAATKGITHSDMDELESELARLRKLKAEKLTDMLKAAREEVSGLLEVSVS
PNPT*
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mRNA from alignment at E_fasciculatus_S2_contig9915:471..5131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9915.17908.1 ID=mRNA_E_fasciculatus_S2_contig9915.17908.1|Name=mRNA_E_fasciculatus_S2_contig9915.17908.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4661bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9915:471..5131+ (Ectocarpus fasciculatus EfasUO2)
GGACACGCACTTCGACCGGCTGGTAAACCTGGAGACGACGCTGGACAGCT
TGAGGACGCAGCAGGGCGACCGTGGCCGGGCGGTCGAAAGCATCGTCAAG
GAGATGGAAACCATCAACGAGAACATGGACCGAAAACCGGAGGCAAGCCA
GAGCTAGACTACTGCTGTACTGCTGTTGAACGCTTGGGGTGCTTGCTTGG
CTACGGGGCATCGTCAATTGGAAATGCGGCGCGCGCGAACGAGCGCAATC
TGAAACTTTTACCTCTCGCAGGGAGCGGGAGGAGAGAGGGTACTCAGTCA
GTAGGTTTCTATCTCAGTAGACAGCAGAAGACAGCTCGTGGCACCCTATT
GGAAGCCTGATGATGGCGAAAGCTTCTGGAGGAGTCCGGGGGCGAGCCTG
GGGTAGACCGACCGCCCTCCCCCCCCTCTGCATTTGCAGACCACACAACC
CGCTCCGGCGGGTCTGTATCATCGTGGCTGTCCGTCTCTGTCTCTGCCTC
TGTTTTGTTTTGTGCGCAGCAGCTATATAAGTCCGTCCGTGTTTCTTCCC
GCCCTGCCTTTTGTTATTGCCTCCGCGCCCCGCCCTCTCTCATTCGTGCA
ACTATTTACAATGTTCTTTCCTTCCTTCCTTCCGTCCGTTCATGTGTTTG
TTTTTTTTTCTCTCCCAGGACGGGGAGTTCGAGGAGTCTGGAGGGGCGGA
GTGGGCCGGGAAGGAGGGGTGGGAGCTCTCGGAGGAGCGGCTGGAGAAGC
TCAGGGGCCGCCTGGCGACGCTGCGCGTGCTGAAGCTGGAGAGGGCGGCC
GAGATGATCGGCCTGGTGGTGGACTGCCAGAAGCTCTTCCGGGAGCTCGG
GCCGCCGGTGGAGAACCCCCTGCAGAACAAGGTGTGCGAGCGAGGTTTTG
TGTAATGTGTGTTGTGCCTGTCATGAGTGATGTGTCGGCGGGTGCACGTG
GAAAACATGACCATATTTTGAACCGGGCATGTATGGCATGGGCTTTGATC
TACTTTTTCTCGTTTTTGATGGGGTTCGGCATTGGATTTTTCGCCGGGGC
TTGCCCTTCGCGGAACACGCCCTCCGGGGCCATAGAGACAGCCAGCCCCC
ACGATTTGTTGCGTCGAGCGCACGGGCCGCGGATGCCTAGCGAGCTCGGG
ATATACGCGGTAGTGTACCGACGAGCCTGCTGCGTGCCCCACAAATGAAT
CCCGAGAAAACGCTCGCTGCCGCCAGAGAATGATGCGCCGAAGCACGAAG
GCATTCAGGATTTGTCACATGGTTCTAAAGGGTTGTTGTCGAAAACAGCC
TACCAGTACCTTGGAAGCATAGTCTCGTAACCAGATACCTACCCGAACAG
CAGTACTGCTGTCGATGTCGATACCTGATCAACTGCATGCCAGCGCAGCC
CACTATCGGGCACTACATACATAACTCCTTTTCATTTTGTTTTGGCGGGA
TGGTGTGGACGGCGCTGCTGTCTATTGGCGTGCGTGTTGTGAAGCACAGC
ACACGAAGGTGAAGGTGCTATGCAAACCGGCAAGAGAGAAATCGAAATGA
AACAGTAGCACCACCAGCAGCAGCAGAGAAAAAAGAGAGAAAAGAGAGAC
AGCAGTCACTGGCGCTAGGCGGCTTGCGAAAAGGTTATTTACGTGTTTGA
CGACATTGACATTGCATCGACGGGTGGATGGCGTCCGCACTCCATACACG
TGTTGTGTTGTGGCCGGCAGAAGTAGAAAGGAAGGAAGGAAACGGTTCTC
ATGGCCAGCAACAAATGTTGATGGGTGAGTGGCGCCACCGCCACATGCTG
CTGTAACACTCGACACCTGGTGTCGTCTCCTATAACCTGTAGGGTTGATA
CATATGCTTCTTTGGTCTGGAGTGGTGGCCCCCGAAGGACATGGATCGAT
GGTGGATGGATTCTCTCCCCCTTGCATGGGTGGCAATGCACTGCAGTTGT
CTACCTCCGGCTCCGGTGACAAAAGTAGCCCTTGACACTGATAACGGGTT
GCTAATGCGCGCAATCATTAGAAACGATGTCACACTGTCTCTCTGCATAT
GCGAGCCGAAAATGGATGACCTCCCGTTTCCGGAGAGAGTTTTTACTGAT
CTTCTAAAATATTCAGAAATCGAAAAACTTTTGACTTTTGACTTTCAGGT
ACTTTAACAACAACAATATCAACCTGATAATGTGTTATCAATGTGGTCTC
TGATTAGCCCATAGGTGATCTCTGACCACCAAGAAAATAGTGTAGATGAT
ACATGATAGTTACCTCTTGAAACCCAACCGCTTCTCGGCCCAATCTCAAT
CTCACAGCAGTGCTATCCAATGCGAATGCGCCCGAGACCTGCGCGCTTAC
TTTTCGCGCTTGGGTTTTCCGAAGAAAGAGGCCTTGTCGAGTCGCAGCAA
CGGAAATTATGGTAACAGGTTGAGGCTGTGGCATTGTGCATGGGGATTTC
CAGGTGCAGGTGTCCTGTCCCCCGTGTCCATATGGCGACACTATCGCTCT
AGCTTTTGACATACCCTTGTCCGTTTTTTTTTTTTTTTTGTTTTTTCCTT
TTTTTTTTTCCCGTTTTTTTTTTGTTTTTGTGTCCTTTTTTTTTCTTTTT
TTTTTGGAATTGTTTATTCGTTGGATCCGTCCTGCCCGGTGGACAAGCCG
TCTCTTAGGACGGAGGCACAGACGCAGACGAGCGTCGGGCTGAGCGTATT
CAACGTGCACAGGCTCAAGAAGCTTCGGGAAGACATGCGGGTGAGCGCTG
AGCTGACTACACTGCACTGCAGGCTGGACGTGTGTTATCAGGCGGTTGAT
GGTGATGGTGATGGTTGGGTGCAGCAGCAGCAGCAGTGAGGATGATAGGA
TGATAATCGAATATGGAGGTTCGTGAATTGGCACCGTCCTTACCTTACCT
TTTGTTTCGAGTGTCGTTGTACACGTGTGTTCCCCAAGTGTGTGCGGCCT
TACAAGGCATGGTTCGGGAAATAGTTTGTTGACACGTTACGATGAAGAGG
TTTCGAGAAAAGGCGATATGTTCAAGTTTTTATCGGCAGTTCTGACTGTT
GAGGGAACCCCTGCGCTTGATTGAGTCTGTCCAAGTCCTCACACTTGAGT
CGGTGATGCTGGCCGGCTTTGTTCCGTGCGGTCATGCGTGCAACGAACGC
TCTTTGGCTCTTTGGTCGACGCCGTTCTTTGCGGGGACACTTTTTGTTGT
TGTGTCTGGTGTGAGAAGCAGGAGGGGGGCGTGGGGAGAGCTGACCGCTG
AGCGCACGCTTGTTGTGTCTCCTATTTTTTTGGCTTGGATGACTGCTGTT
TTGGCGAGGCGGAGGAGGAGGAGGAGGAGGCTCGTCTCGATCTCGGTGTC
TCGAAACTTTCGTATGCTCGCTTGTCCTCCTCCCTCCCGTCTGGGGGCGC
TGGCTTGCGCCCCGGAAGCTTGATTGCCCACAGCGGCTGAAACTACCGCC
TTTCGCCGTTGCCGCTGGTTTGAGTACGAGTGCGGTCATTTGGACGGGGG
CCCTGTATTTTCATCCCTCCGCCGCCGAAGTCGGTCCTTATTCTCCTAAC
CAAGGCGCCCGCCATGCCTGTTTAATTTTTTTTCCCGACAGGAGGATCGC
GAGCTACACACGGAGCGGAAGAAGGAACATAGGCTACAGATTGAGAGCCT
GTGGGAGAAGCTGAGCGTGCCGGAGCGGAGCCGCCAGGTAGGGAGGGTAC
AGCAGTGCGGTGCGCGTGGTGCGTTGTGGTGCTGCCTGCGCCCGTGGCCT
CGACGGGGGCTTAGAGAATACATGGCCGCGGGAAATGTATTTGGTCTACC
GGGGAAGCGGGGGCCGCCGATTGGCTTTTCCGGTGCTTCCATTGTGCCTC
CCTGTCGCTCACTCTGTTGCCTGCGGCTGGCTACGTACCCCGAAATCGTG
ATTCAGGGCGGGGTGCTACTTGTTGGCCTTGCGTTGTCGTTGTGCCGCCG
CTGCTGTTGTTGTGGCCGCGGCAAGCGGCTTCGAGTACGGTGTGTGGTCA
TTTTGACGCGAAACACTCGGGGGACTGGCTGCTTGCTGCTTGCTGCTTGC
TGTGTGTTCGGTCACGTTCTTCCCGGTTCTAGCGAGTCGCATGTGAACAA
TCACGAGCGACGACAAAATTCAACCAATTTTGTGCTTTTGTGGTGCTGTT
GGTGATCGTGGAATCCACTTCTGTATTTTTTGCGTTCTGGCGGTGGTAAG
TGGTAACGGCGGTGGTAACGGCGGTGGCCTTGACAAGAACGAAGCGCCGC
CAGGGCTCGCGTACCGGCCTCGAGGGGCGGTGTGTATGTATCTCTGCTTG
TTGCTTGAAGGCTTGGCTTTGAAGGGTTGGTTGTGTTTCGTTTCCTCGTG
GTGTACATGGGTGGCTCTTCTCTCCTCAAAATTCCAAACGCGCGTTGAGG
GCGGCCTGCCTGCCCTTTGCCAAGCCGTTGCTCGCCCCTCCCGTCATTCA
TTCATTCATTCAAACGTACGTTGTCGACTTGTCGTGTCAGGAGCACCTGG
CTGCTACGAAGGGGATAACGCACTCCGACATGGATGAGCTGGAGTCGGAG
CTGGCTCGGCTGAGGAAGCTCAAGGCCGAAAAGCTTACGGACATGCTTAA
GGCCGCGAGGGAGGAGGTCTCGGGTTTGCTAGAGGTGAGTGTGAGCCCTA
ACCCAACCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9915:471..5131+

>mRNA_E_fasciculatus_S2_contig9915.17908.1 ID=mRNA_E_fasciculatus_S2_contig9915.17908.1|Name=mRNA_E_fasciculatus_S2_contig9915.17908.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=765bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9915:471..5131+ (Ectocarpus fasciculatus EfasUO2)
GGACACGCACTTCGACCGGCTGGTAAACCTGGAGACGACGCTGGACAGCT
TGAGGACGCAGCAGGGCGACCGTGGCCGGGCGGTCGAAAGCATCGTCAAG
GAGATGGAAACCATCAACGAGAACATGGACCGAAAACCGGAGGCAAGCCA
GAGCTAGACTACTGCTGTACTGCTGACGGGGAGTTCGAGGAGTCTGGAGG
GGCGGAGTGGGCCGGGAAGGAGGGGTGGGAGCTCTCGGAGGAGCGGCTGG
AGAAGCTCAGGGGCCGCCTGGCGACGCTGCGCGTGCTGAAGCTGGAGAGG
GCGGCCGAGATGATCGGCCTGGTGGTGGACTGCCAGAAGCTCTTCCGGGA
GCTCGGGCCGCCGGTGGAGAACCCCCTGCAGAACAAGGTGTGCGAGCGAG
GTTTTCCGTCTCTTAGGACGGAGGCACAGACGCAGACGAGCGTCGGGCTG
AGCGTATTCAACGTGCACAGGCTCAAGAAGCTTCGGGAAGACATGCGGGA
GGATCGCGAGCTACACACGGAGCGGAAGAAGGAACATAGGCTACAGATTG
AGAGCCTGTGGGAGAAGCTGAGCGTGCCGGAGCGGAGCCGCCAGGAGCAC
CTGGCTGCTACGAAGGGGATAACGCACTCCGACATGGATGAGCTGGAGTC
GGAGCTGGCTCGGCTGAGGAAGCTCAAGGCCGAAAAGCTTACGGACATGC
TTAAGGCCGCGAGGGAGGAGGTCTCGGGTTTGCTAGAGGTGAGTGTGAGC
CCTAACCCAACCTAG
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