mRNA_E_fasciculatus_S2_contig9908.17901.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9908.17901.1
Unique NamemRNA_E_fasciculatus_S2_contig9908.17901.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9908.17901.1 vs.
Match: Orf183, (hypothetical mitochondrial protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET9_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 5.350e-48
Identity = 90/149 (60.40%), Postives = 109/149 (73.15%), Query Frame = 1 
Query:    1 LSLLLFLSPVYGAFWLLLATLYFLFKGTYKNIFIAWGVFFSTWYFFFIVLFSDFEYQIWIGGDHTLKIMIYLCDKYSIHRSPWYIKPFEGFYFQTLLLLHLLSSKLGFPIYVPSL---IKVFISFLKYILG-GDKGPANCAGEENSKKK 435
            LSLLLF SPVYGA WLL ATLYFLFKG YKNIFI W +FF  WYFFFI   SD++  I IGG+HT  IM+Y   KYS     WY + F+ F +QT+++L  LS +LGFP+Y+PS+   +K F+SFLK I   GD+GPA CAGE+NSKKK
Sbjct:   32 LSLLLFWSPVYGACWLLTATLYFLFKGDYKNIFIVWVLFFCIWYFFFIACLSDYKSSILIGGEHTKDIMMYFSYKYSPSSCYWYSRLFKDFCYQTVIMLDFLSIELGFPVYIPSVFAVLKFFMSFLKSIFDRGDEGPAQCAGEKNSKKK 180
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BLAST of mRNA_E_fasciculatus_S2_contig9908.17901.1 vs.
Match: Uncharacterized (protein n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N119_PETFA)

HSP 1 Score: 138 bits (348), Expect = 8.910e-37
Identity = 82/233 (35.19%), Postives = 123/233 (52.79%), Query Frame = 1 
Query:    4 SLLLFLSPVYGAFWLLLATLYFLFKGTYKNIFIAWGVFFSTWYFFFIVLFSDFEYQIWIGGDHTLKIMIYLCDKYSI--HRSPWYIKPFEGFYFQTLLLLHLLSSKLGFPIYVPSLIKVFISFLKYILGGDKGPANCAGEENSKKKGGDSSFFSSPFKGSAASEPKAKTYDDLEAYK--------HWSPLKSKEGFSGTRYVYYREVWLPVFGRFTGCGSRDASKEEILKDKR 672
            S+++ +SP+   F L   T++F++   +K+I   WG++   WYF F++L   F+  IWIGG++T  I  YL  K +   +   WY    + F FQT+L LH LSSKLGFPIY+PS+IK FI  +K++      P  C+ E+ S+       F S+   G   S  K    D+    K        ++     K   SG RY+ Y E     F ++T C SR+A++EEIL  K+
Sbjct:   24 SVMILISPIMSIFLLFFPTVFFIYSSDFKSILKIWGIYIIGWYFLFMILMLGFDSSIWIGGEYTRPISEYLLSKATKAPYSDKWYAYMLDSFCFQTVLFLHTLSSKLGFPIYLPSIIKGFIGLIKFLFDDRNNPPRCSPEKKSEP------FSSTTVGGFKPSYQKGDVLDECAKMKASIQASRGYFDLFNLKNTVSGDRYISYGEAGFQFFKKYTICYSRNATQEEILDQKK 250
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BLAST of mRNA_E_fasciculatus_S2_contig9908.17901.1 vs.
Match: Uncharacterized (protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A3Q8QZN6_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.360e-30
Identity = 81/230 (35.22%), Postives = 122/230 (53.04%), Query Frame = 1 
Query:   19 LSPVYGAFWLLLATLYFLFKGTYKNIFIAWGVFFSTWYFFFIVLFSDFEYQIWIGGDHTLKIMIYLCDKYSIHRSP--WYIKPFEGFYFQTLLLLHLLSSKLGFPIYVPSLIKVFISFLKYILGGDKGPA-NCAGEENSKKKGGDSSFFSSPFKGSAASEPK--------AKTYDDLEAYKHWSPL-KSKEGFSGTRYVYYREVWLPVFGRFTGCGSRDASKEEILKDKR 672
            +SP+   F LL++T++   K  YK+IF+ WG FF TWYF F      F+  IWIGG+++  I+ YL    S +  P  WY    E F  Q+++LL L+S+KLGF +YVPSL+K  +   K ILG   G +  C+ E+ SK       FFSS     + + P         A+  D +   + +  L       SG  ++ Y EV +P +   + C SR+A+KEE+  +K+
Sbjct:   29 ISPIISVFILLVSTIFLSCKNNYKDIFMIWGFFFFTWYFLFTACMLGFDSPIWIGGEYSRLILEYLVINTSNYSGPIRWYTFMLENFCIQSVVLLDLISNKLGFSLYVPSLLKGLLILCKSILGKGGGSSPKCSPEKGSK-------FFSSKVVKESKTYPVKTDVLDSCAEIRDSIRRTRGYFDLYNGGNRISGNCHISYLEVSIPFYQNLSLCFSRNATKEELANNKK 251
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9908.17901.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Orf183,5.350e-4860.40hypothetical mitochondrial protein n=1 Tax=Ectocar... [more]
Uncharacterized8.910e-3735.19protein n=1 Tax=Petalonia fascia TaxID=2893 RepID=... [more]
Uncharacterized4.360e-3035.22protein n=1 Tax=Endarachne binghamiae TaxID=698476... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9908contigE_fasciculatus_S2_contig9908:3332..4032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size678
Hectar predicted targeting categorysignal anchor
Exons2
Cds size678
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842633.3562977-CDS-E_fasciculatus_S2_contig9908:3331..34861696842633.3562977-CDS-E_fasciculatus_S2_contig9908:3331..3486Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9908 3332..3486 -
1696842633.3664482-CDS-E_fasciculatus_S2_contig9908:3509..40321696842633.3664482-CDS-E_fasciculatus_S2_contig9908:3509..4032Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9908 3510..4032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9908.17901.1prot_E_fasciculatus_S2_contig9908.17901.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9908 3332..4032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9908.17901.1

>prot_E_fasciculatus_S2_contig9908.17901.1 ID=prot_E_fasciculatus_S2_contig9908.17901.1|Name=mRNA_E_fasciculatus_S2_contig9908.17901.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=226bp
LSLLLFLSPVYGAFWLLLATLYFLFKGTYKNIFIAWGVFFSTWYFFFIVL
FSDFEYQIWIGGDHTLKIMIYLCDKYSIHRSPWYIKPFEGFYFQTLLLLH
LLSSKLGFPIYVPSLIKVFISFLKYILGGDKGPANCAGEENSKKKGGDSS
FFSSPFKGSAASEPKAKTYDDLEAYKHWSPLKSKEGFSGTRYVYYREVWL
PVFGRFTGCGSRDASKEEILKDKRG*
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mRNA from alignment at E_fasciculatus_S2_contig9908:3332..4032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9908.17901.1 ID=mRNA_E_fasciculatus_S2_contig9908.17901.1|Name=mRNA_E_fasciculatus_S2_contig9908.17901.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=701bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9908:3332..4032- (Ectocarpus fasciculatus EfasUO2)
TTAAGTTTGTTACTTTTTTTGTCTCCTGTGTATGGTGCTTTTTGGTTATT
ATTAGCAACATTATACTTTTTATTTAAAGGTACGTATAAAAATATTTTTA
TAGCTTGGGGTGTCTTTTTTAGTACTTGGTATTTCTTTTTTATAGTTCTC
TTCTCAGATTTTGAATACCAAATCTGGATTGGAGGTGATCATACTTTAAA
GATTATGATTTATCTATGCGATAAATATTCTATCCATAGGTCTCCTTGGT
ATATTAAGCCATTTGAAGGCTTTTATTTCCAAACACTTCTGTTGTTGCAT
CTTTTAAGCTCCAAATTGGGTTTTCCTATTTATGTACCTTCGTTAATTAA
AGTTTTTATATCTTTTTTAAAGTATATACTTGGGGGGGATAAAGGCCCTG
CCAATTGTGCAGGAGAAGAAAACTCTAAAAAAAAAGGGGGGGATTCATCT
TTTTTTAGTAGTCCATTTAAAGGAAGCGCCGCTTCTGAACCCAAGGCTAA
AACTTACGATGATCTCGAGGCTTGTGCTATTTTAAAAGGGAGCTAGATAA
GCATTGGAGTCCGTTAAAGTCAAAGGAGGGTTTTTCGGGTACTAGGTATG
TATATTACAGAGAGGTATGGCTTCCTGTTTTTGGAAGGTTTACTGGTTGT
GGTAGTAGAGACGCTAGTAAAGAAGAGATACTAAAGGATAAAAGGGGTTG
A
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9908:3332..4032-

>mRNA_E_fasciculatus_S2_contig9908.17901.1 ID=mRNA_E_fasciculatus_S2_contig9908.17901.1|Name=mRNA_E_fasciculatus_S2_contig9908.17901.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9908:3332..4032- (Ectocarpus fasciculatus EfasUO2)
TTAAGTTTGTTACTTTTTTTGTCTCCTGTGTATGGTGCTTTTTGGTTATT
ATTAGCAACATTATACTTTTTATTTAAAGGTACGTATAAAAATATTTTTA
TAGCTTGGGGTGTCTTTTTTAGTACTTGGTATTTCTTTTTTATAGTTCTC
TTCTCAGATTTTGAATACCAAATCTGGATTGGAGGTGATCATACTTTAAA
GATTATGATTTATCTATGCGATAAATATTCTATCCATAGGTCTCCTTGGT
ATATTAAGCCATTTGAAGGCTTTTATTTCCAAACACTTCTGTTGTTGCAT
CTTTTAAGCTCCAAATTGGGTTTTCCTATTTATGTACCTTCGTTAATTAA
AGTTTTTATATCTTTTTTAAAGTATATACTTGGGGGGGATAAAGGCCCTG
CCAATTGTGCAGGAGAAGAAAACTCTAAAAAAAAAGGGGGGGATTCATCT
TTTTTTAGTAGTCCATTTAAAGGAAGCGCCGCTTCTGAACCCAAGGCTAA
AACTTACGATGATCTCGAGGCTTATAAGCATTGGAGTCCGTTAAAGTCAA
AGGAGGGTTTTTCGGGTACTAGGTATGTATATTACAGAGAGGTATGGCTT
CCTGTTTTTGGAAGGTTTACTGGTTGTGGTAGTAGAGACGCTAGTAAAGA
AGAGATACTAAAGGATAAAAGGGGTTGA
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