mRNA_E_fasciculatus_S2_contig9902.17898.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU7_ECTSI) HSP 1 Score: 451 bits (1161), Expect = 1.270e-154 Identity = 216/228 (94.74%), Postives = 219/228 (96.05%), Query Frame = 1 Query: 1 TISDYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKDDKMKKAATIPHWDYRHMPMSFPALRPKKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNMV 684 T DYELHQALDF+PKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARI AHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAG+TCITAKGDGRHFISNSKDQTMKLWDMRRML+PKDDKMKKAA IPHWDYRHM MS PALRP KSKRASDESVKTFHGHKVLQTLIRCYFSP HTTGQRFVMSGSADG VCIWDILTGNMV Sbjct: 328 TRGDYELHQALDFQPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARISAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAGITCITAKGDGRHFISNSKDQTMKLWDMRRMLDPKDDKMKKAAHIPHWDYRHMTMSLPALRPIKSKRASDESVKTFHGHKVLQTLIRCYFSPTHTTGQRFVMSGSADGSVCIWDILTGNMV 555
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A5_9PHAE) HSP 1 Score: 431 bits (1109), Expect = 2.110e-146 Identity = 211/251 (84.06%), Postives = 218/251 (86.85%), Query Frame = 1 Query: 1 TISDYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKDDKMKKAAT----------------------IPHWDYRHMPMSFPALRPKKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNMVR 687 T DYELHQALDF+PKPGDSFCLFAIQFSPSNTHILGGGSD HVYLYSLERKERV+RIRAHD+DVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAG+TCITAKGDGRHFISNSKDQTMKLWDMRRML+PKDDKMKKA + WDYRHMPMSF ALRPKK KR SDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADG VCIWD+LTGNMVR Sbjct: 392 TRGDYELHQALDFQPKPGDSFCLFAIQFSPSNTHILGGGSDKHVYLYSLERKERVSRIRAHDNDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAAVGGLCGHQAGITCITAKGDGRHFISNSKDQTMKLWDMRRMLDPKDDKMKKATHTSLWCPSYFVGITCLCVCVVVYVHCWDYRHMPMSFTALRPKKGKRTSDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGSVCIWDVLTGNMVR 642
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: WD40-repeat-containing (domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR0_9STRA) HSP 1 Score: 235 bits (599), Expect = 2.330e-68 Identity = 128/270 (47.41%), Postives = 165/270 (61.11%), Query Frame = 1 Query: 10 DYELHQALDFK-PKPGD-SFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAA-VGGLCGHQ--------------------------------AGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKDDKMKKAATIPHWDYR-HMPMSFPALRP------------KKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTG 675 DYE+H+ALDF+ P+ G SFCLF+I+FSP+NTH+L GGSD+ V+LY+LERKE VAR++AH DDVNAV + D G V+LSG DDC I++WD+RS VG LCGH AG+TC++A+ DGR SNSKDQT+KLWD R M P + WDYR +P + A+ + + D+S+KTF GH+VLQTLIRC FSP HTTGQR+++SGS G V +WD+LTG Sbjct: 345 DYEMHEALDFQSPERGAYSFCLFSIRFSPTNTHLLAGGSDHAVHLYNLERKEVVARLKAHADDVNAVCYLDDGGNVLLSGSDDCSIRVWDIRSSKTKPVGTLCGHDGERYVHRRMQQYRAAPDADPLVAAALHSGVAAAGITCVSARADGRTVASNSKDQTLKLWDARAMAGPGSAVARLPTRQSSWDYRWDIPAAMRAVSAXXXXXXXXXXGGRSCTQGVDQSLKTFSGHRVLQTLIRCNFSPMHTTGQRYIVSGSQCGGVHMWDVLTG 614
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XUD8_BRAFL) HSP 1 Score: 223 bits (567), Expect = 2.860e-68 Identity = 113/231 (48.92%), Postives = 151/231 (65.37%), Query Frame = 1 Query: 10 DYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLR-----SPDAAVGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKD-DKMKKAATIPHWDYRHMPMSFPALRPKKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNMV 684 DYE H ALD P FC+F++ FS N +LGG +D +Y+Y ER ER RI +H+DDVNAVA+AD SQ++ SGGDD + ++WD R SP+A VG L GH G+T I +K D RH ISNSKDQT+KLWD+R+ P+ + ++A +WDYR P+ P ++ A D S+ T+ GH VL TL+RC FSP HTTGQRF+ SG + G V ++D+LTG +V Sbjct: 91 DYETHIALDLNPSER-RFCIFSLTFSSDNKEVLGGANDGCLYIYDRERNERTLRIESHEDDVNAVAYADDSSQILYSGGDDGLCRVWDRRMLSENSPNA-VGTLAGHSDGITFIDSKADARHLISNSKDQTIKLWDIRKFSPPEGLEASRRAVANQNWDYRWQPV--PKRGRYNARLAGDTSLMTYRGHGVLHTLVRCRFSPVHTTGQRFIYSGCSTGSVVVYDVLTGQIV 317
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: DDB1- (and CUL4-associated factor 11-like isoform X1 n=23 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZES3_BRABE) HSP 1 Score: 223 bits (569), Expect = 3.830e-66 Identity = 112/231 (48.48%), Postives = 152/231 (65.80%), Query Frame = 1 Query: 10 DYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLR-----SPDAAVGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKD-DKMKKAATIPHWDYRHMPMSFPALRPKKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNMV 684 DYE H ALD P FC+F++ FS N +LGG +D +Y+Y ER ER RI +H+DDVNAVA+AD SQ++ SGGDD + ++WD R +P+A VG L GH G+T I +K D RH ISNSKDQT+KLWD+R+ P+ + ++A +WDYR P+ +R ++ A D S+ T+ GH VL TL+RC FSP HTTGQRF+ SG + G V ++D+LTG +V Sbjct: 277 DYETHIALDLNPSER-RFCIFSLTFSSDNKEVLGGANDGCLYIYDRERNERTLRIESHEDDVNAVAYADDSSQILYSGGDDGLCRVWDRRMLSENNPNA-VGTLAGHSDGITFIDSKSDARHLISNSKDQTIKLWDVRKFSPPEGLEASRRAVANQNWDYRWQPVP-KRVRTSSARLAGDTSLMTYRGHGVLHTLVRCRFSPVHTTGQRFIYSGCSTGSVVVYDVLTGKIV 504
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: DDB1-and (CUL4-associated factor 11 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2SEB9_ARAVE) HSP 1 Score: 215 bits (547), Expect = 1.110e-65 Identity = 113/232 (48.71%), Postives = 151/232 (65.09%), Query Frame = 1 Query: 10 DYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRS----PDAAVGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKD--DKMKKAATIPHWDYR--HMPMSFPALRPKKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNM 681 D ELH+AL P+ FC+FA++FS ILGG +D ++Y+Y+ E R RI +H+DDVN VAFAD+ SQ++ SGGDD + K+WD R+ VG L GH+ G+T + KGDGRH I+NSKDQT+KLWDMR M +P + KA +WDYR +P S L +K K D S+ T+ GH VLQTLIRC+FSP TTGQ ++ +G A GRV ++D+LTG + Sbjct: 24 DQELHEALPLYPEER-RFCVFALRFSQDGREILGGANDQYLYVYNREENRRTLRIYSHEDDVNTVAFADNTSQILFSGGDDGICKVWDRRTLCEFSPKPVGILAGHEDGITYVDPKGDGRHLITNSKDQTIKLWDMR-MFSPSSCVEGAYKAVKSHNWDYRWQRVPTS---LNKQKRKLPGDTSLMTYRGHSVLQTLIRCHFSPETTTGQSYIYTGCAQGRVVVYDVLTGKI 250
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: Predicted (protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQ28_NEMVE) HSP 1 Score: 213 bits (541), Expect = 9.970e-65 Identity = 112/230 (48.70%), Postives = 145/230 (63.04%), Query Frame = 1 Query: 10 DYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAA----VGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRML-NPKDDKMKKAATIPHWDYRHMPMSFPALRPKKSKR-ASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNM 681 DY H ALD +P+ FC F+I FS NT IL GG+D +Y+Y ++R RI H+DD+ +V FAD GSQ+ S GDD + K+WD R+ + VG L GH G+TCI +KGDGRH I+NSKDQT+KLWD+R+ N K+A WDYR P+KS+ A D S+ T+ GH VL TLIRCYFSP HTTGQR++ +G + G V I+DILTG + Sbjct: 91 DYNTHVALDLRPEVS-RFCAFSITFSHDNTEILAGGNDACLYIYDRGSEQRTLRIEGHEDDLGSVRFADPGSQIFYSAGDDGLCKVWDRRTLNETNPCPVGVLSGHADGITCIASKGDGRHLITNSKDQTIKLWDIRKFSDNDGIVATKRAVASQRWDYRWQ------KAPRKSETLAGDVSLMTYRGHSVLNTLIRCYFSPDHTTGQRYIYTGCSTGSVVIYDILTGEV 313
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: DDB1- (and CUL4-associated factor 11-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014591523) HSP 1 Score: 218 bits (554), Expect = 2.880e-64 Identity = 114/230 (49.57%), Postives = 145/230 (63.04%), Query Frame = 1 Query: 10 DYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRS----PDAAVGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKD-DKMKKAATIPHWDYRHMPMSFPALRPKKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNMV 684 +Y+ H AL P SFC+F++ FS N ILGG +D +Y+Y E +R RI AH+DDVNAVAFADS SQ++ SGGDD ++K+WD R+ VG L GH G+T I +KGD R +SN KDQ+MKLWD+R + + KKA T WDYR FP KK A D S+ T+ GH VL TLIRC+FSP TTGQR+V SG A G V ++D+LTG +V Sbjct: 236 EYDTHNALHLFPGE-HSFCIFSLTFSYDNREILGGANDGCLYVYDRESNQRTLRIEAHEDDVNAVAFADSSSQILFSGGDDGLLKVWDRRTLREENPIPVGTLAGHSDGITYIDSKGDARFLLSNCKDQSMKLWDVRMFSSEEGIQSTKKAVTKQKWDYRWQ--QFPKRASKKKVLAGDSSIMTYRGHSVLNTLIRCHFSPEMTTGQRYVYSGCASGTVVVYDLLTGKIV 462
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: Uncharacterized (protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7N644_STRPU) HSP 1 Score: 216 bits (550), Expect = 7.670e-64 Identity = 114/234 (48.72%), Postives = 146/234 (62.39%), Query Frame = 1 Query: 10 DYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLR----SPDAAVGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRM-LNPKDDKMKKAATIPHWDYRHMPMSFPALRPKKSKRA----SDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNMV 684 DY+ H AL+ +P FC F+IQFS N IL G +D +Y+Y E+ +R RI +H+DDVNAV FAD SQ++ SGGDD + K+WD R S VG L GH G+T I +KGDGRH I+NSKDQ++KLWD+R N + ++A HWDYR + PKKSKR D S+ T+ GH VL TL+RC FSP TTGQR+V + A G V I+DILTG +V Sbjct: 216 DYDTHTALNLRPSTEGHFCAFSIQFSNDNKEILAGANDGCLYIYDREKNDRTLRIESHEDDVNAVCFADGSSQILFSGGDDGLCKVWDRRTLSDSNTKPVGVLAGHMDGITYIDSKGDGRHLITNSKDQSIKLWDIRCFSTNNVVEASRRAVAQQHWDYRWQQV------PKKSKRKRGVKGDTSLMTYRGHGVLHTLLRCRFSPQFTTGQRYVYTACATGAVVIYDILTGKVV 443
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Match: DDB1- (and CUL4-associated factor 11-like isoform X1 n=2 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A93C64) HSP 1 Score: 216 bits (550), Expect = 9.680e-64 Identity = 112/233 (48.07%), Postives = 151/233 (64.81%), Query Frame = 1 Query: 4 ISDYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLERKERVARIRAHDDDVNAVAFADSGSQVVLSGGDDCVIKIWDLRSPDAA----VGGLCGHQAGVTCITAKGDGRHFISNSKDQTMKLWDMRRMLNPKDDKMKKAATIPH-WDYR--HMPMSFPALRPKKSKRASDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGRVCIWDILTGNM 681 D E+H+AL P+ FC+FA++FS ILGG +D +Y+Y+ E +R +IR+H+DDVN VAFAD+ SQ++ SGGDD + K+WD R+ A VG L GH+ G+T + +KGDGRH I+NSKDQT+KLWDMR P + + A H WDYR +P S L K K D S+ T+ GH VLQTLIRC+FSP TTGQ ++ +G A GRV ++D+LTG + Sbjct: 231 FGDQEVHEALPLFPEER-RFCVFALRFSQDGREILGGANDECLYVYNREENKRTLKIRSHEDDVNTVAFADNTSQILFSGGDDGICKVWDRRTLCEAQPKPVGILVGHEDGITYVDSKGDGRHLITNSKDQTIKLWDMRAFSPPSSIEGSRRAVASHNWDYRWQRVPSS---LNKHKRKLPGDTSLMTYRGHSVLQTLIRCHFSPEATTGQSYIYTGCAQGRVVVYDVLTGKI 459 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9902.17898.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9902.17898.1 >prot_E_fasciculatus_S2_contig9902.17898.1 ID=prot_E_fasciculatus_S2_contig9902.17898.1|Name=mRNA_E_fasciculatus_S2_contig9902.17898.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=229bp TISDYELHQALDFKPKPGDSFCLFAIQFSPSNTHILGGGSDNHVYLYSLEback to top mRNA from alignment at E_fasciculatus_S2_contig9902:272..5600- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9902.17898.1 ID=mRNA_E_fasciculatus_S2_contig9902.17898.1|Name=mRNA_E_fasciculatus_S2_contig9902.17898.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5329bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9902:272..5600- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9902:272..5600- >mRNA_E_fasciculatus_S2_contig9902.17898.1 ID=mRNA_E_fasciculatus_S2_contig9902.17898.1|Name=mRNA_E_fasciculatus_S2_contig9902.17898.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=687bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9902:272..5600- (Ectocarpus fasciculatus EfasUO2)back to top |