mRNA_E_fasciculatus_S2_contig9889.17884.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9889.17884.1
Unique NamemRNA_E_fasciculatus_S2_contig9889.17884.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.590e-74
Identity = 135/170 (79.41%), Postives = 147/170 (86.47%), Query Frame = 2
Query:    2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNRKPRLKTRESASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFK-LRAPVPIDLPRRNSGSRTEVGG 508
            SVLN MGAIVMLTDAVCMGMLALSAG FR +  ADRIDIVVMV Q LC+AVLVVPLY+DTLL + G IRNR+  +KTR++A+QRAEREFINRR LRLWG+TWF MVGSN+FAC+RDTREGIRDPTGSRRQ RLRAGQIGPYPEWS K LRAPVPIDLPRRN G     GG
Sbjct:  509 SVLNTMGAIVMLTDAVCMGMLALSAGTFRMTAAADRIDIVVMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRGPVKTRDNAAQRAEREFINRRTLRLWGRTWFNMVGSNVFACVRDTREGIRDPTGSRRQDRLRAGQIGPYPEWSLKNLRAPVPIDLPRRNFGGFDWYGG 678          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.490e-49
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 2
Query:    2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNRKPRLKTRESASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEW 433
            SVLNA+ A+VMLTDAVCMGMLAL+AG F  + TA R+D  VMV Q LC+AVLV+PLY+DT +S+ G IRNRK  +  RE+ + RAERE   R  LRLWG+ WFRMV SN+FACLRDTREGIR PT S RQ RLR G+IGP+P+W
Sbjct:  554 SVLNAVAAMVMLTDAVCMGMLALAAGTFNGTATAARMDTAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKGSVDERENEADRAEREVTKRLTLRLWGRAWFRMVFSNMFACLRDTREGIRGPTHSARQGRLRTGRIGPFPDW 697          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 3.560e-45
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 2
Query:  155 LVVPLYMDTLLSLRGTIRNRKPRLKTRESASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGS 490
            LVVPLY+DT +SL G +R+R+ R+K RE+  +RAEREFI RR LRLW  TWFRMVG+NLFAC+RDTREGIRDPTGSR QARLRAG+IGPYPEW+FKL  PV IDLPRR SG+
Sbjct:  610 LVVPLYLDTCVSLLGVVRSRRGRVKARENEDERAEREFIIRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWNFKLHVPVAIDLPRRRSGA 721          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY1_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.010e-33
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 2
Query:  239 SASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGS 490
            +  +RAEREFI RR LRLW  TWFRMVG+NLFAC+RDTREGIRDPTGSR QARLRAG+IGPYPE  FKLR PV IDLPRR SG+
Sbjct:  666 TVGRRAEREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPESYFKLRVPVAIDLPRRRSGA 749          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD37_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 9.940e-33
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 2
Query:  248 QRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGS 490
            +RAEREFI RR LRLW  TWFRMVG+NLFAC+RDTREGIRDPTGSR QARLRAG+IGP+PE  FKLR PV IDLPRR SG+
Sbjct:  810 RRAEREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPHPELYFKLRVPVAIDLPRRRSGA 890          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L6_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.310e-22
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 2
Query:  314 MVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSF-KLRAPVPIDLPRRNSGSRTEVGG 508
            MVGSNLFAC+RDTREGIRDPTGSR QAR RAG +GPYP WS  ++RAPVPIDLPRRNSG     GG
Sbjct:    1 MVGSNLFACVRDTREGIRDPTGSRHQARSRAGPVGPYPVWSLSRIRAPVPIDLPRRNSGGFDWYGG 66          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.780e-12
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 2
Query:    2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNR--KPRLKTRESASQRAE--REFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYP 427
            SV+N +GA ++  DAVC G+LA++A  +  ++ A  ++  V V Q + +  LV+P+Y+D +  + G IR R  K   KT +  +  +   R++I     R W  TW  M+  N+FAC RDTR+G+R P        L A + GPYP
Sbjct: 1809 SVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRKALGKTGQQLTGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTRDGVRKPH------LLTAARSGPYP 1948          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.140e-12
Identity = 62/174 (35.63%), Postives = 88/174 (50.57%), Query Frame = 2
Query:    2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNR--KPRLKTRESAS--QRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGSRTEVGGG 511
            SV+N + A V   DA+ MG+ A SA  +  +  A  ++  V+V Q L +  LV+P+Y+D +  + G IRNR  K   KT    +  +R  R +I     R W  TW  M+  N+FAC RDT EG+R P  +       A + GPYP          P+D  ++  G  TE GGG
Sbjct: 1587 SVINNIEACVTAIDAISMGVFAASALWWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRKALGKTGHELTDEEREARHYIRSYTRRQWCGTWCTMLRHNVFACARDTSEGVRKPRFTT------AARSGPYP----------PLDRSKQAGG--TEDGGG 1742          
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Mucin-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.980e-12
Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 2
Query:    2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNRKPRLKTRESASQ-RAE----REFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYP 427
            SV+N +GA ++  DAV  G+LA++A  +  ++ A  ++  V V Q + +  LV+P+Y+D +  + G IRNR  +   +    Q + E    R++I     R W  TW  M+  N+FAC RDTREG+R P        L A + GPYP
Sbjct: 1768 SVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRKALGKTGQQQLKGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTREGVRKPH------LLTAARSGPYP 1908          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized2.590e-7479.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.490e-4965.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.560e-4574.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.010e-3378.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.940e-3380.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.310e-2277.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.780e-1236.30protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.140e-1235.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Mucin-15.980e-1236.05n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9889contigE_fasciculatus_S2_contig9889:3651..5268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size675
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_008780.1
Cds size657
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9889.17884.1prot_E_fasciculatus_S2_contig9889.17884.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9889 3651..5252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842631.095113-CDS-E_fasciculatus_S2_contig9889:3650..38361696842631.095113-CDS-E_fasciculatus_S2_contig9889:3650..3836Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9889 3651..3836 -
1696842631.1103137-CDS-E_fasciculatus_S2_contig9889:3894..40431696842631.1103137-CDS-E_fasciculatus_S2_contig9889:3894..4043Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9889 3895..4043 -
1696842631.1257896-CDS-E_fasciculatus_S2_contig9889:4324..44121696842631.1257896-CDS-E_fasciculatus_S2_contig9889:4324..4412Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9889 4325..4412 -
1696842631.1453142-CDS-E_fasciculatus_S2_contig9889:4709..48071696842631.1453142-CDS-E_fasciculatus_S2_contig9889:4709..4807Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9889 4710..4807 -
1696842631.1589835-CDS-E_fasciculatus_S2_contig9889:5116..52521696842631.1589835-CDS-E_fasciculatus_S2_contig9889:5116..5252Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9889 5117..5252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842631.1701143-UTR-E_fasciculatus_S2_contig9889:5252..52681696842631.1701143-UTR-E_fasciculatus_S2_contig9889:5252..5268Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9889 5253..5268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9889.17884.1

>prot_E_fasciculatus_S2_contig9889.17884.1 ID=prot_E_fasciculatus_S2_contig9889.17884.1|Name=mRNA_E_fasciculatus_S2_contig9889.17884.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=219bp
MGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVP
LYMDTLLSLRGTIRNRKPRLKTRESASQRAEREFINRRALRLWGKTWFRM
VGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPID
LPRRNSGSRTEVGGGKEGLWRVIILCVAPATLFIRPSPPSVWKQPVKRRR
RGTRITTALTNVTGRMEVG
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mRNA from alignment at E_fasciculatus_S2_contig9889:3651..5268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9889.17884.1 ID=mRNA_E_fasciculatus_S2_contig9889.17884.1|Name=mRNA_E_fasciculatus_S2_contig9889.17884.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1618bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9889:3651..5268- (Ectocarpus fasciculatus EfasUO2)
CAGCGTTCTGAATGCGATGGGAGCAATCGTGATGTTGACTGACGCGGTTT GTATGGGGATGCTGGCTCTGTCCGCTGGCATGTTCCGCTGGAGTACCACT GCGGATAGGATCGATATTGTGGTCATGGTAACACAGCAACTGTGTGTTGC AGGTGAGATGCGGATGAAGTTCATTGTGATGCCGGCAACATAAATCTGAC GTGCGCCGTAAGCTGATCATGTCTGCCAGGTATTGGTCTATTTTTTTGGT GCACCACACTTCTTTTCTCTTACAGTTGCTCAGGGGCCCTCCTGTGTATG TACAGCCCCGAACATCCGTGGCAAGAAGATCCAAAAACAATTTTTGTGTC CTGCCTCCAGGGAAGGGAAATCTAGCTAAGTTACCAAGTTTTCGGTGCAT GTTGAGTTCGCCTCGCTGTCCGCCCTGATTCTCGGTGGGACGTCCTTGAT TGGATTGACAGTACTGGTGGTACCGCTCTACATGGATACCCTCCTGTCGT TGCGAGGGACGATTCGGAACAGGAAGCCACGCCTCAAGACCAGGGAAAGT GCGTCTCAAGTGAGTAAACAGCAGGCGCACACCCTAGCCGCTCAATAGAT TCTACCTGGTGTCAAGAAGCGGTGCCACATATCTGCCATGATTGCTGACT TGTGTCCGTGCAGTATTTTTTTAACGGGTAACCAATCGAGATGGACAGAG CATATAACCGCCGTGTCGGGAGCTGATATCGCTGGCATTGTCCCAGCTTG GGCGCAACGGAAAACCTGCCTATCATTCTTTGTGTGTTAGGGTCGAGACT AGTCGCCACCAACGGCAAACTCACTTTTGTGTCTCAAATCACGCACCACT TAACAGCGCGCCGAGCGAGAGTTCATCAACCGTCGAGCTCTTCGGCTGTG GGGGAAAACTTGGTTCCGGATGGTCGGCAGCAATTTGTTCGCATGTAAGT GCCCGTGACAGAGAGTTCTGGATGTTTGAGGTCTTGACATCGAACATGAG AGACGAACCTATGTTTAGGTTGATAGTTGCTCAGTCTTTCAAGTACGAAC GAGACCAGACCAAACAGTACGTTTTGATAGAAAACACCTCATGTCTACGA TTGAATCTGAGGCGTCATTTTACGTGTTGAACTGTCGTCGGTTGTAGCAT CTCGATGACCAAACGCGACGACTACGGCTGCATCGCGTCATGTATTCCCT CTTGGCACTTCATCTTCCAATGCAGGCCTGAGAGATACGAGAGAAGGCAT CCGTGACCCGACAGGCTCAAGGCGCCAAGCTCGTTTGAGAGCCGGGCAAA TTGGCCCTTACCCCGAGTGGTCCTTCAAACTTCGGGCACCGGTTCCTATC GACCTGCCACGTCGTAACTCTGGTGCTTTCGATTGGTACGGGGGGAATCA CGACAACGCCGATGCCATCACAGACCAACGAGTCTCGGACAGAAGTTGGA GGTGGAAAAGAGGGCCTGTGGAGAGTGATCATCCTCTGCGTCGCTCCAGC TACTCTTTTCATTCGACCATCCCCGCCGTCGGTATGGAAGCAGCCGGTCA AACGTCGTCGCCGTGGAACGCGGATAACTACGGCTCTGACGAACGTAACG GGTCGGATGGAAGTGGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9889:3651..5268-

>mRNA_E_fasciculatus_S2_contig9889.17884.1 ID=mRNA_E_fasciculatus_S2_contig9889.17884.1|Name=mRNA_E_fasciculatus_S2_contig9889.17884.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=657bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9889:3651..5268- (Ectocarpus fasciculatus EfasUO2)
ATGGGAGCAATCGTGATGTTGACTGACGCGGTTTGTATGGGGATGCTGGC
TCTGTCCGCTGGCATGTTCCGCTGGAGTACCACTGCGGATAGGATCGATA
TTGTGGTCATGGTAACACAGCAACTGTGTGTTGCAGTACTGGTGGTACCG
CTCTACATGGATACCCTCCTGTCGTTGCGAGGGACGATTCGGAACAGGAA
GCCACGCCTCAAGACCAGGGAAAGTGCGTCTCAACGCGCCGAGCGAGAGT
TCATCAACCGTCGAGCTCTTCGGCTGTGGGGGAAAACTTGGTTCCGGATG
GTCGGCAGCAATTTGTTCGCATGCCTGAGAGATACGAGAGAAGGCATCCG
TGACCCGACAGGCTCAAGGCGCCAAGCTCGTTTGAGAGCCGGGCAAATTG
GCCCTTACCCCGAGTGGTCCTTCAAACTTCGGGCACCGGTTCCTATCGAC
CTGCCACGTCGTAACTCTGGTTCTCGGACAGAAGTTGGAGGTGGAAAAGA
GGGCCTGTGGAGAGTGATCATCCTCTGCGTCGCTCCAGCTACTCTTTTCA
TTCGACCATCCCCGCCGTCGGTATGGAAGCAGCCGGTCAAACGTCGTCGC
CGTGGAACGCGGATAACTACGGCTCTGACGAACGTAACGGGTCGGATGGA
AGTGGGC
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