mRNA_E_fasciculatus_S2_contig9889.17884.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE) HSP 1 Score: 254 bits (649), Expect = 2.590e-74 Identity = 135/170 (79.41%), Postives = 147/170 (86.47%), Query Frame = 2
Query: 2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNRKPRLKTRESASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFK-LRAPVPIDLPRRNSGSRTEVGG 508
SVLN MGAIVMLTDAVCMGMLALSAG FR + ADRIDIVVMV Q LC+AVLVVPLY+DTLL + G IRNR+ +KTR++A+QRAEREFINRR LRLWG+TWF MVGSN+FAC+RDTREGIRDPTGSRRQ RLRAGQIGPYPEWS K LRAPVPIDLPRRN G GG
Sbjct: 509 SVLNTMGAIVMLTDAVCMGMLALSAGTFRMTAAADRIDIVVMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRGPVKTRDNAAQRAEREFINRRTLRLWGRTWFNMVGSNVFACVRDTREGIRDPTGSRRQDRLRAGQIGPYPEWSLKNLRAPVPIDLPRRNFGGFDWYGG 678
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.490e-49 Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 2
Query: 2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNRKPRLKTRESASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEW 433
SVLNA+ A+VMLTDAVCMGMLAL+AG F + TA R+D VMV Q LC+AVLV+PLY+DT +S+ G IRNRK + RE+ + RAERE R LRLWG+ WFRMV SN+FACLRDTREGIR PT S RQ RLR G+IGP+P+W
Sbjct: 554 SVLNAVAAMVMLTDAVCMGMLALAAGTFNGTATAARMDTAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKGSVDERENEADRAEREVTKRLTLRLWGRAWFRMVFSNMFACLRDTREGIRGPTHSARQGRLRTGRIGPFPDW 697
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX1_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.560e-45 Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 2
Query: 155 LVVPLYMDTLLSLRGTIRNRKPRLKTRESASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGS 490
LVVPLY+DT +SL G +R+R+ R+K RE+ +RAEREFI RR LRLW TWFRMVG+NLFAC+RDTREGIRDPTGSR QARLRAG+IGPYPEW+FKL PV IDLPRR SG+
Sbjct: 610 LVVPLYLDTCVSLLGVVRSRRGRVKARENEDERAEREFIIRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPEWNFKLHVPVAIDLPRRRSGA 721
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY1_9PHAE) HSP 1 Score: 137 bits (344), Expect = 2.010e-33 Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 2
Query: 239 SASQRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGS 490
+ +RAEREFI RR LRLW TWFRMVG+NLFAC+RDTREGIRDPTGSR QARLRAG+IGPYPE FKLR PV IDLPRR SG+
Sbjct: 666 TVGRRAEREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPYPESYFKLRVPVAIDLPRRRSGA 749
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD37_9PHAE) HSP 1 Score: 135 bits (339), Expect = 9.940e-33 Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 2
Query: 248 QRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGS 490
+RAEREFI RR LRLW TWFRMVG+NLFAC+RDTREGIRDPTGSR QARLRAG+IGP+PE FKLR PV IDLPRR SG+
Sbjct: 810 RRAEREFITRRTLRLWAPTWFRMVGNNLFACVRDTREGIRDPTGSRLQARLRAGRIGPHPELYFKLRVPVAIDLPRRRSGA 890
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L6_ECTSI) HSP 1 Score: 104 bits (259), Expect = 1.310e-22 Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 2
Query: 314 MVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSF-KLRAPVPIDLPRRNSGSRTEVGG 508
MVGSNLFAC+RDTREGIRDPTGSR QAR RAG +GPYP WS ++RAPVPIDLPRRNSG GG
Sbjct: 1 MVGSNLFACVRDTREGIRDPTGSRHQARSRAGPVGPYPVWSLSRIRAPVPIDLPRRNSGGFDWYGG 66
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 1.780e-12 Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 2
Query: 2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNR--KPRLKTRESASQRAE--REFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYP 427
SV+N +GA ++ DAVC G+LA++A + ++ A ++ V V Q + + LV+P+Y+D + + G IR R K KT + + + R++I R W TW M+ N+FAC RDTR+G+R P L A + GPYP
Sbjct: 1809 SVINGIGACIVAIDAVCTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRKALGKTGQQLTGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTRDGVRKPH------LLTAARSGPYP 1948
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 3.140e-12 Identity = 62/174 (35.63%), Postives = 88/174 (50.57%), Query Frame = 2
Query: 2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNR--KPRLKTRESAS--QRAEREFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYPEWSFKLRAPVPIDLPRRNSGSRTEVGGG 511
SV+N + A V DA+ MG+ A SA + + A ++ V+V Q L + LV+P+Y+D + + G IRNR K KT + +R R +I R W TW M+ N+FAC RDT EG+R P + A + GPYP P+D ++ G TE GGG
Sbjct: 1587 SVINNIEACVTAIDAISMGVFAASALWWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRKALGKTGHELTDEEREARHYIRSYTRRQWCGTWCTMLRHNVFACARDTSEGVRKPRFTT------AARSGPYP----------PLDRSKQAGG--TEDGGG 1742
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Match: Mucin-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 5.980e-12 Identity = 53/147 (36.05%), Postives = 81/147 (55.10%), Query Frame = 2
Query: 2 SVLNAMGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPLYMDTLLSLRGTIRNRKPRLKTRESASQ-RAE----REFINRRALRLWGKTWFRMVGSNLFACLRDTREGIRDPTGSRRQARLRAGQIGPYP 427
SV+N +GA ++ DAV G+LA++A + ++ A ++ V V Q + + LV+P+Y+D + + G IRNR + + Q + E R++I R W TW M+ N+FAC RDTREG+R P L A + GPYP
Sbjct: 1768 SVINGIGACIVAIDAVSTGLLAVAALKWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRKALGKTGQQQLKGESPEARDYIRTFTRRQWCGTWCAMLRHNVFACARDTREGVRKPH------LLTAARSGPYP 1908 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9889.17884.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9889.17884.1 >prot_E_fasciculatus_S2_contig9889.17884.1 ID=prot_E_fasciculatus_S2_contig9889.17884.1|Name=mRNA_E_fasciculatus_S2_contig9889.17884.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=219bp MGAIVMLTDAVCMGMLALSAGMFRWSTTADRIDIVVMVTQQLCVAVLVVPback to top mRNA from alignment at E_fasciculatus_S2_contig9889:3651..5268- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9889.17884.1 ID=mRNA_E_fasciculatus_S2_contig9889.17884.1|Name=mRNA_E_fasciculatus_S2_contig9889.17884.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1618bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9889:3651..5268- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9889:3651..5268- >mRNA_E_fasciculatus_S2_contig9889.17884.1 ID=mRNA_E_fasciculatus_S2_contig9889.17884.1|Name=mRNA_E_fasciculatus_S2_contig9889.17884.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=657bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9889:3651..5268- (Ectocarpus fasciculatus EfasUO2)back to top |