mRNA_E_fasciculatus_S2_contig9883.17882.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9883.17882.1
Unique NamemRNA_E_fasciculatus_S2_contig9883.17882.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9883.17882.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L347_9PHAE)

HSP 1 Score: 511 bits (1317), Expect = 6.340e-178
Identity = 286/337 (84.87%), Postives = 295/337 (87.54%), Query Frame = 1 
Query:    7 READLRNEETLLREGTQALGAAEAKRTALAERAAAVRAELLLQQREVDLLEREQHAVALAAAETXXXXXXXXXXXXXXXXXTGWRAEASREMENLAGVAGMPGARLEACEQEEDALVRRNAGIRDWYAATVAEVENLGGVRLSHRLLFGGSGGRGSGGGVEGMELMVGLGQGLTMEVTVSAADGKLSSAQLCHGQGGG-SAGLARISPSELEEMRHAADALPAPQNLGRLVVEALNRTACAALREEHVRQVRRRYLTGYRPPSREVTVTMGAGIVACFRLAADYPKVVGGAEVVALTGVGGWSAHETKQLCRRVNDMALPTLMATMDGLEAEVEAME 1014
            READ+RNEETLLRE +QALGA EAKRT LAERAAAVRAELLLQQREVDLLEREQHAVALAAAET                  GWRAEASREMENL GVAGMP ARLEACE+EEDALVRRN GIRDWYAATVAEVENLGGVRLSHRLLFG     G+GG VEGME MVGLG GLTMEVTVSA DGKLSSAQLCHGQGGG +AG A ISPSELEEMR AADALPAPQNLG+LV+EAL+R  CAA+REEHVRQVRRRYLTGYR PSREVTVTMGAGIVACF LAADYPKVVGGAEVVALTGVGGWSAHETKQLCRRVNDMALPTLMATMD LEAEVEAME
Sbjct:  176 READIRNEETLLREDSQALGAVEAKRTVLAERAAAVRAELLLQQREVDLLEREQHAVALAAAETAATGAGGAAAGS-----NGWRAEASREMENLVGVAGMPEARLEACEREEDALVRRNTGIRDWYAATVAEVENLGGVRLSHRLLFG----AGAGGRVEGMEFMVGLGSGLTMEVTVSAVDGKLSSAQLCHGQGGGGAAGFAGISPSELEEMRRAADALPAPQNLGKLVIEALSRATCAAVREEHVRQVRRRYLTGYRSPSREVTVTMGAGIVACFHLAADYPKVVGGAEVVALTGVGGWSAHETKQLCRRVNDMALPTLMATMDVLEAEVEAME 503
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9883.17882.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.340e-17884.87protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9883contigE_fasciculatus_S2_contig9883:3..2118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1026
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004100.1
Cds size1026
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842631.0368729-CDS-E_fasciculatus_S2_contig9883:2..8631696842631.0368729-CDS-E_fasciculatus_S2_contig9883:2..863Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9883 3..863 +
1696842631.0569637-CDS-E_fasciculatus_S2_contig9883:1953..21181696842631.0569637-CDS-E_fasciculatus_S2_contig9883:1953..2118Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9883 1954..2118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9883.17882.1prot_E_fasciculatus_S2_contig9883.17882.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9883 3..2118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9883.17882.1

>prot_E_fasciculatus_S2_contig9883.17882.1 ID=prot_E_fasciculatus_S2_contig9883.17882.1|Name=mRNA_E_fasciculatus_S2_contig9883.17882.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=342bp
KAREADLRNEETLLREGTQALGAAEAKRTALAERAAAVRAELLLQQREVD
LLEREQHAVALAAAETAATAAAGAAAAAAAAGSTGWRAEASREMENLAGV
AGMPGARLEACEQEEDALVRRNAGIRDWYAATVAEVENLGGVRLSHRLLF
GGSGGRGSGGGVEGMELMVGLGQGLTMEVTVSAADGKLSSAQLCHGQGGG
SAGLARISPSELEEMRHAADALPAPQNLGRLVVEALNRTACAALREEHVR
QVRRRYLTGYRPPSREVTVTMGAGIVACFRLAADYPKVVGGAEVVALTGV
GGWSAHETKQLCRRVNDMALPTLMATMDGLEAEVEAMERES*
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mRNA from alignment at E_fasciculatus_S2_contig9883:3..2118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9883.17882.1 ID=mRNA_E_fasciculatus_S2_contig9883.17882.1|Name=mRNA_E_fasciculatus_S2_contig9883.17882.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2116bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9883:3..2118+ (Ectocarpus fasciculatus EfasUO2)
AAGGCGAGAGAGGCGGATCTCCGGAACGAGGAGACGCTGTTGCGGGAGGG
CACCCAGGCCCTGGGCGCCGCCGAGGCGAAGAGAACGGCGCTGGCGGAGA
GAGCAGCCGCCGTACGAGCGGAGCTCCTGCTGCAGCAGCGAGAGGTAGAC
CTCCTGGAGAGGGAGCAGCACGCGGTGGCCCTGGCGGCGGCGGAAACGGC
GGCCACAGCAGCAGCAGGGGCGGCGGCGGCGGCGGCGGCGGCGGGGTCGA
CCGGGTGGAGGGCCGAAGCCTCCAGGGAGATGGAGAACCTCGCCGGGGTT
GCGGGGATGCCGGGAGCCCGACTGGAGGCTTGCGAGCAGGAGGAGGACGC
CCTCGTGCGGAGGAACGCCGGCATCCGGGACTGGTACGCGGCCACGGTCG
CCGAGGTGGAAAACCTGGGAGGCGTTCGGCTGTCCCACCGGCTGCTCTTC
GGCGGCAGCGGCGGCAGAGGCAGTGGCGGCGGCGTGGAGGGGATGGAGCT
CATGGTGGGTCTCGGTCAGGGGTTGACCATGGAAGTGACCGTGTCCGCGG
CGGACGGGAAGCTTAGCTCCGCGCAGCTCTGCCACGGCCAGGGGGGTGGG
TCGGCGGGTCTCGCAAGGATTTCTCCGTCCGAGCTGGAGGAGATGAGGCA
CGCCGCGGACGCGCTTCCCGCCCCGCAGAACTTGGGGAGGCTCGTAGTCG
AGGCCCTGAACCGGACGGCGTGCGCCGCGCTGAGGGAGGAGCACGTGCGG
CAGGTGCGGCGCAGGTATCTGACGGGGTACCGCCCCCCGAGCCGGGAGGT
AACCGTCACGATGGGCGCCGGGATCGTGGCGTGTTTCCGCCTGGCCGCGG
ACTATCCGAAGGTGCGCACTCGGATTTTTTGTTATTGTTTTATGTTGGGT
CTGGCCGAGCCAGCCCAGCTTGCTCGCCTTCCAGCACGTGTTGTATGTGT
GTGAGAAGTTCTCGGTGCATGGCCCAACTCCTCAGTTCCAGGTCTGGGAG
TAGGAGACTACTATTGCTGTACACCGGTCTTTTGCCGGCACTTTCCCTTC
CCAAATGTGGACGACGGTAGCAACTGCGAGAGGCCTAAGCTAGCTTTCGA
AAGAGAGGCAGGTGCTCATCCTTTCTGCTGAAAGCTTGGCGAGGTTTTCT
TCGTGTGTCTCGGTGCCGCGTGGATAACCGTGGTCTGTCCTGTTTGCTGA
ATGCTTGACTATACAAACGTCATCACCCGAAGATCTAGCTAGAGTATAGA
CCAAGAAGCTGTGTCCCACGACTGCAACAAGATCCAGGGCTCAGTTACTT
CGCGCTGCTTCTGGACCTGACGTACAGCGTTCTCTTGTAATGTTTGCTTT
ATACCTAACCCCGCGCATCCCATCGGTAGTGTGCGTGTGTCCTTTGCACG
CGATTGTGCACGCCCCTCGCGGAGACCGCCGATCTGTTGCCGTACCCACC
CGAACATTTTTCTCTCGCAACGTAGGCTCTGCGGCTTTAATGCTTGTTTC
TGCACTTGACATAGGGCCCAAAAATACGCAACAAACATGCACGGGTGTCC
GAGTGATTTCAGCACGAAGGCAGCATCGATGACAAACACGGCTGCATGCT
CTACACCAGTGTCTTTATATTGAACTTCATGCGCAGAAGGCCGTGGTGGC
GACGTTTCAGCAGCTTGCTCGTTTTGGTCGTTGTGTCCACGGTCCCTTTC
GCACGGCTTGCTGCTCATCCGGCGCATGTGTGTGTCAAGCTTATTTTGAA
TTGTTCGCGTGGTGATGCAAAATCACATATACAGGAACAGAGAGTACTCT
ATTCGTTTGAAGCCATATCTTCTATATGCCTTCTGCGCATCGTCTGTCCC
AACAACAACCTCTGTAGCCCTCACGTGTTTCTTTGCTGTTTGCTGTTGCT
GGTGGTCCTCCCGCCTTTGGGAAAAAAAAAAACGCACCAAAAACATTTTA
GGTGGTGGGCGGAGCGGAGGTGGTGGCGCTCACCGGCGTCGGCGGCTGGT
CGGCGCACGAAACCAAGCAGCTCTGTCGCCGAGTCAACGACATGGCCCTC
CCCACCCTCATGGCCACCATGGACGGGCTCGAGGCAGAGGTGGAGGCGAT
GGAAAGGGAGAGCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9883:3..2118+

>mRNA_E_fasciculatus_S2_contig9883.17882.1 ID=mRNA_E_fasciculatus_S2_contig9883.17882.1|Name=mRNA_E_fasciculatus_S2_contig9883.17882.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1026bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9883:3..2118+ (Ectocarpus fasciculatus EfasUO2)
AAGGCGAGAGAGGCGGATCTCCGGAACGAGGAGACGCTGTTGCGGGAGGG
CACCCAGGCCCTGGGCGCCGCCGAGGCGAAGAGAACGGCGCTGGCGGAGA
GAGCAGCCGCCGTACGAGCGGAGCTCCTGCTGCAGCAGCGAGAGGTAGAC
CTCCTGGAGAGGGAGCAGCACGCGGTGGCCCTGGCGGCGGCGGAAACGGC
GGCCACAGCAGCAGCAGGGGCGGCGGCGGCGGCGGCGGCGGCGGGGTCGA
CCGGGTGGAGGGCCGAAGCCTCCAGGGAGATGGAGAACCTCGCCGGGGTT
GCGGGGATGCCGGGAGCCCGACTGGAGGCTTGCGAGCAGGAGGAGGACGC
CCTCGTGCGGAGGAACGCCGGCATCCGGGACTGGTACGCGGCCACGGTCG
CCGAGGTGGAAAACCTGGGAGGCGTTCGGCTGTCCCACCGGCTGCTCTTC
GGCGGCAGCGGCGGCAGAGGCAGTGGCGGCGGCGTGGAGGGGATGGAGCT
CATGGTGGGTCTCGGTCAGGGGTTGACCATGGAAGTGACCGTGTCCGCGG
CGGACGGGAAGCTTAGCTCCGCGCAGCTCTGCCACGGCCAGGGGGGTGGG
TCGGCGGGTCTCGCAAGGATTTCTCCGTCCGAGCTGGAGGAGATGAGGCA
CGCCGCGGACGCGCTTCCCGCCCCGCAGAACTTGGGGAGGCTCGTAGTCG
AGGCCCTGAACCGGACGGCGTGCGCCGCGCTGAGGGAGGAGCACGTGCGG
CAGGTGCGGCGCAGGTATCTGACGGGGTACCGCCCCCCGAGCCGGGAGGT
AACCGTCACGATGGGCGCCGGGATCGTGGCGTGTTTCCGCCTGGCCGCGG
ACTATCCGAAGGTGGTGGGCGGAGCGGAGGTGGTGGCGCTCACCGGCGTC
GGCGGCTGGTCGGCGCACGAAACCAAGCAGCTCTGTCGCCGAGTCAACGA
CATGGCCCTCCCCACCCTCATGGCCACCATGGACGGGCTCGAGGCAGAGG
TGGAGGCGATGGAAAGGGAGAGCTGA
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