mRNA_E_fasciculatus_S2_contig9882.17881.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9882.17881.1
Unique NamemRNA_E_fasciculatus_S2_contig9882.17881.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9882.17881.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L552_9PHAE)

HSP 1 Score: 286 bits (731), Expect = 2.340e-88
Identity = 201/295 (68.14%), Postives = 213/295 (72.20%), Query Frame = 1 
Query:  100 EMAAIAQRARERLENAIPPAGGPSGAKSAMAS-PSRYAAEARREAEAARKDAQRAKWAKDREERGLPPIKEPDEQNRG----------DDEERFPGDAGTMREKNRQEIRNMEAARGMTAEDHRERSQQAFEEAAKAHKEMQRRDSQMRQMGNNLHDRAKPKAADDKN--KLSPDDPDSNPPAKAERPPLERGQAQKDLNAAEGEL----------------KKGGGRTISSVGGLEEFENQGNRRLSSXXXXXXXXXXXXXXQGLGEDGRLESIGDVMQHVGATGSRRKLLSWK 897
            +MA +AQRA+ERLENAIPPAGGPSGAK+AMAS P+RYAAEARREAE  RKDAQRAKWAKDREERGLPPIKEPDEQ R           DDEERFPGDA TMREKNR+EIRNME ARGMTAE+HRE SQQAFEEAAKAHKEMQRRD QMRQMGNNLH RAKP+   D N  KLSPDDPD+NPPA A RPPLERGQAQKDL+  EG                                             XXXXXXXXXXXXXXQGL E GRL+  GDV+QHVGA GSRRKLLS K
Sbjct:  179 DMAVMAQRAKERLENAIPPAGGPSGAKAAMASFPNRYAAEARREAELVRKDAQRAKWAKDREERGLPPIKEPDEQQRQKATAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRELSQQAFEEAAKAHKEMQRRDQQMRQMGNNLHYRAKPQPDTDNNNKKLSPDDPDNNPPA-AGRPPLERGQAQKDLDVNEGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGLDEGGRLDGFGDVVQHVGAAGSRRKLLSRK 472
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BLAST of mRNA_E_fasciculatus_S2_contig9882.17881.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ58_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 1.020e-60
Identity = 121/151 (80.13%), Postives = 125/151 (82.78%), Query Frame = 1 
Query:  196 PSRYAAEARREAEAARKDAQRAKWAKDREERGLPPIKEPDEQNRG----------DDEERFPGDAGTMREKNRQEIRNMEAARGMTAEDHRERSQQAFEEAAKAHKEMQRRDSQMRQMGNNLHDRAKPKAADDKN----KLSPDDPDSNPP 606
            PSRYAAEARREAE ARKDAQRAKWAKDREERGLPPIKEPDEQ R           DDEERFPGDA TMREKNR+EIRNME ARGMTAE+HRER QQAFEEAAKAHKEMQRRD QMRQMGNNLHDRAKP+   D N    KLSPDDPD+ PP
Sbjct:   97 PSRYAAEARREAELARKDAQRAKWAKDREERGLPPIKEPDEQRRQEAKAARGGDFDDEERFPGDAATMREKNRREIRNMEEARGMTAEEHRERGQQAFEEAAKAHKEMQRRDQQMRQMGNNLHDRAKPQPGTDNNNNNKKLSPDDPDNIPP 247
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9882.17881.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.340e-8868.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.020e-6080.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9882contigE_fasciculatus_S2_contig9882:1007..5422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size897
Hectar predicted targeting categoryother localisation
Exons6
Cds size897
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9882.17881.1prot_E_fasciculatus_S2_contig9882.17881.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9882 1007..5422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.9278352-CDS-E_fasciculatus_S2_contig9882:1006..12011696842630.9278352-CDS-E_fasciculatus_S2_contig9882:1006..1201Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9882 1007..1201 +
1696842630.9420254-CDS-E_fasciculatus_S2_contig9882:1617..18121696842630.9420254-CDS-E_fasciculatus_S2_contig9882:1617..1812Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9882 1618..1812 +
1696842630.9600542-CDS-E_fasciculatus_S2_contig9882:2678..27531696842630.9600542-CDS-E_fasciculatus_S2_contig9882:2678..2753Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9882 2679..2753 +
1696842630.973084-CDS-E_fasciculatus_S2_contig9882:3288..34281696842630.973084-CDS-E_fasciculatus_S2_contig9882:3288..3428Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9882 3289..3428 +
1696842630.9883745-CDS-E_fasciculatus_S2_contig9882:3902..40121696842630.9883745-CDS-E_fasciculatus_S2_contig9882:3902..4012Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9882 3903..4012 +
1696842631.0042102-CDS-E_fasciculatus_S2_contig9882:5240..54221696842631.0042102-CDS-E_fasciculatus_S2_contig9882:5240..5422Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9882 5241..5422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9882.17881.1

>prot_E_fasciculatus_S2_contig9882.17881.1 ID=prot_E_fasciculatus_S2_contig9882.17881.1|Name=mRNA_E_fasciculatus_S2_contig9882.17881.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=299bp
DDDESYDSFEDDDDSYDSYDGDDDSSEEDDDDLEMAAIAQRARERLENAI
PPAGGPSGAKSAMASPSRYAAEARREAEAARKDAQRAKWAKDREERGLPP
IKEPDEQNRGDDEERFPGDAGTMREKNRQEIRNMEAARGMTAEDHRERSQ
QAFEEAAKAHKEMQRRDSQMRQMGNNLHDRAKPKAADDKNKLSPDDPDSN
PPAKAERPPLERGQAQKDLNAAEGELKKGGGRTISSVGGLEEFENQGNRR
LSSSPQQANGGEEEEEEQGLGEDGRLESIGDVMQHVGATGSRRKLLSWK
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mRNA from alignment at E_fasciculatus_S2_contig9882:1007..5422+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9882.17881.1 ID=mRNA_E_fasciculatus_S2_contig9882.17881.1|Name=mRNA_E_fasciculatus_S2_contig9882.17881.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4416bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9882:1007..5422+ (Ectocarpus fasciculatus EfasUO2)
GACGACGACGAGTCGTACGACAGTTTCGAGGACGATGACGACAGCTACGA
CAGCTACGATGGCGACGACGACTCCTCAGAAGAAGACGATGACGACCTGG
AGATGGCCGCAATCGCGCAAAGAGCGAGAGAGCGACTAGAGAACGCGATA
CCGCCGGCGGGAGGACCCTCGGGCGCCAAGAGCGCTATGGCAAGTGTTGA
TATGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTGTTGTTGCTACCATGACGTGAAGCCTAACCCCCCCCGGCTTGGTACG
TGGATGTGTTGTTGCTACCATGACGTGAAGCCTAACCCCCCCGGCTTGGC
TAGGTACGTGGATGCTCGTCGTCGGCTGGCGTGATCTGACAGCATTTAAC
CTTGACCAGTAGAGGCTGTCTTCCTCTCTCTCTCGCTCTCTGTCCCTGTC
GGTACTGTATCGTTCTGATTCCCTTGGACCTCAAAGTTTACCGGACGACC
CAAAGCTCAGTTTGTTTTTTTTCGGAATAATCAGATGTATCCCTATCCGT
CCGTGATGGCGCTATGCTGCATGTTTTGTGCTGTACTCTATGCAAATACC
ACGGCGACCAGCCTAGTCGCTATGCGGCGGAGGCCAGGAGAGAAGCTGAA
GCCGCACGGAAGGACGCGCAGAGGGCCAAGTGGGCGAAGGACAGAGAGGA
ACGAGGATTGCCCCCGATCAAAGAACCGGATGAGCAGAACCGAGGAGACG
ACGAGGAGCGGTTTCCCGGTGATGCCGGCACCATGCGCGAGAAGAATCGC
CAGGAGGTGTGTTGTACTATACTGTGATACTATGATATTATGATATTATG
ATATTATGTTACACTGTAGGCGTGTGTGACACCATGTGAGGGATGACACC
GTGTGCGGTATGACATATGACATCGTGTGTGGGATGACGTCGTGTGCGGG
ATGACCCCGTGTGCGGTATGACCCCGTGTGCGGTGGGCATGGATGACTGT
CTCGGTGTGGATGTTGAAAAAGAAGAAGAAATAAGTCAACTGTGACTCGT
CGACAAGAATCGCGAGAAGAATCGCCAGGAGGTGTGTTGTACTATACTGC
TGTGATACTATGATACTGTGATACTGTGATACTGTAGGCGTGTGAGACTG
TAGGCATGTGTGACACCATGTGCGGTATGACATCATGTGAGGGATGACAC
CGTGTGCGGTGTGGCACCGTGTGCAGGATGACGCCGTGTGCGGTATGACG
CCGTGTGCGGTATGACACCGTGTGCGGTATGACACCGTGTGCGGTAGGCA
TGGATGACTATCTCGTTTCGTTTTGCGTCCAGACAGCGGTGTGGATGTTG
AAGAAGAGAAAAAAAATAGCCAACTGTGACTCGTCGACAAGGCATACTTA
CAATACAATACACTCGTAGGGTTAGCCGGCAGGGCTTCGTGGTGAGGAAG
TGTCCAACATTGAAGGATTGAAGACCGTCACGGCAAGAACGTGTCATGGC
ATTGCTGTACGTACTGTACTTGCGTGCGCGCGAGAGCGAGCTGGGGTATT
TTCCGTGTGCCTGTTGGCCTACAGCAAGAACTGTACCTCAGCACCTCGTG
GCGTATTCCGTCGTTTGCTACTAACTTCTACTCGCAATTGTTACACGGCG
TTTCGTTTATTTTACGCATCAGATTCGGAACATGGAGGCAGCACGAGGCA
TGACGGCGGAGGACCATCGCGAGCGGAGCCAGCAGGCCTTCGAAGAGGTA
CGTTTGCAATACATGCACGTACACTGCTCCGTCCTTCTGCATATCCTGCT
GCCGATACATGTCATGCTGATATATGTTGTTTATTGAGTTGAAGGCGACG
TCAGTGTATCTTATCCTTTGTTTCGTGCGTGTCTAGCCTCCCTCCTTTGG
CCACTTGGGGTAAACACGAGGCCCCGCAGAATGTTCCTATCCGCGACCCC
CCCTTTCTGGCCTCGCCAAGTTGTTGGTGGGAAGAGTAAGAGTTTGTCGA
CCCCCTCTCCCTCGTCAGCAACAAGCAGTAAGTGGTTCAGGATGGAGGCG
CACTTTCATTACGACTTTCGAACGGCTCCGACGATCGGTTTGGTTGCTTG
GACCCTAAGGCATTGTGTGGAGGAAAGAGAGCGACGTTTAACCTCCTCTC
ATGTCGCCCGAGTTTTTTTTGCTTAACCGGAGCTGCAGCAGTCCATTGGA
TGCGATGGGATGCGTTCGTTTACGATGTGGTCTGATCGTTGCCTGATGGT
GGTCTGGTGTGATCTACGGTACATACCAACAGGCGGCCAAGGCACACAAG
GAGATGCAACGCCGGGACTCTCAGATGAGACAGATGGGCAACAATCTTCA
CGACCGCGCCAAGCCTAAAGCTGCCGACGACAAGAACAAGCTGTCCCCGG
ATGATCCCGACAGCAACCCACCGTAAGAAATTTCTTGAATTTTTCTTGGA
ATGCTATCAAAGTAAATTGAATGACGTACAATGTCGTTGTAGCAGCCAGT
CCATCGAAGGACGGCAATAGGAAGTGGGGGAGTTGAGAAGTGATTGTTTT
TTGTTTTTTGTGTGTGTTTTTTGCCCTGCCTCTCTTTTTCCGAAGGCTGA
GTCCAGCACTCGAAGGCACATCAATAATGCCAGACAAAGAGACAAAGATA
GAGTAGGCCGCTGTGTCTTGGTTGTTGGTTATTGGTTGCCACCGTGCCGA
AACGTCTGATTCGAAATTTCCCTTCCGGAGAAACCACCCTGAATCATGTT
ATCCTTGAGAATGTTGTTCTTTGTCCCTCCCTTCCCTCTCACGGGTGTTA
AATTTTACTGTACAGCAGTGCGAAGGCAGGACCCACTAAAATATTCTTGT
TGAGAATGCGGTTCTTTTCCCCTTTCACACCCCTCCCTCTCAGCAGTGCC
AAGGCAGAGCGCCCTCCGCTGGAGCGTGGACAGGCGCAAAAGGACCTTAA
CGCGGCCGAGGGGGAGCTAAAAAAGGGGGGGGGGAGGACCATCTCCTCAG
TGGGAGGTAAGCTGAATGAAGTCGATTGGAGACCGCGCTGTGTATGTTGG
GGAGATGGGTTGAGTGCGATAAAGGCCCGCGCTATGCATGACGACTAGTG
GGAGGTAAGGATTGGGGTTGGGATATGATGATCGGCTTGAGAGGGAGGCC
AGCCACTGTTTCGCCTACACCAATGACTGTCCAGGTAGGGCATGCACAGG
TATGTTCGATTTGTTCCCGCGCCATAAACGAATCTCTTAATGGTCGTCGT
TCACAACGTGATACACATATGTACAACGCAGGTTGTTGCTGCCTGGTATT
GCGTGACAATTTAAGCCTTCGTGGTTATTTTCGCCGTTGTGCAAGTACAG
GTCGTGGCATCCTCACGGCCATGCCATGGTTATCATTGTCATCCCGTATT
TCCGCGGACAGGATATCATATCTCAACCACGCTCGTTGTGCCCAACTTTT
TTTTACCGAAGTGACGCCGCACATTTGTTTGTAAGGAAGCTTTGTCTTAC
CCAACTTTGTCTAGTCTATTTCATCCACCAAACAGTGCCTAGATTCCTGA
TGGATAGCAGGAGTCCTGGAAAGTTTTGGTTTTGGTTTTGGTTTTGGTTT
TGGTTTGTTGCCCGAGTTTTACAGCATTAGTGTGCAAGACAACGAAAAAG
TGGTGAAACTGAGAGGTTGGTGATTGGATTGCAAGGGCGATCGATGTTTT
TTTTTGCTGATTGCATTGTTTGCATACTATTGTTACAATATATCATAGCA
TACTTTTGTTACAATATATCATAGCATACTATTGTTACAGTATATCATAG
CATACTATTGTAACAATATATCATAGCATACTATTGTTACAATATATCAT
AGCATGCTATTGTTACAATATATCATAGCATACTATTGTTACAATATATC
ATAGCATACTATTGTTACAATATATCATAGCGATGTCCATGCAGTGAGTG
ATGACGGGTTTCTCCGACGGGGAAGGGGAGGCAAGGGAAGGGAAGGGAAG
GGAAGGGAAGGGGCTATTTACAGTGCATGGCTTATACGTCGGAGATTCAG
ACAACTCACCACCAACAACAACAACAACAATAACCACCAACATGGACATC
ATCATCGTCAACAACAGCAACAACAACCACAACAACAGCAACATCATCAT
CGTCAACAGCAACAACAACAACAACAGCCACAACCACAACAACAACAACA
AAAACAACAACAAACCCCACGTGTTTTGTTTTAGGGCTAGAAGAATTCGA
GAACCAGGGAAACCGGCGGCTGTCTTCATCCCCCCAACAAGCCAACGGGG
GAGAAGAGGAAGAGGAAGAGCAAGGTCTGGGTGAAGATGGCCGCCTCGAA
AGCATCGGCGATGTGATGCAGCATGTGGGGGCGACAGGGTCGAGGAGGAA
GCTGCTCAGCTGGAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9882:1007..5422+

>mRNA_E_fasciculatus_S2_contig9882.17881.1 ID=mRNA_E_fasciculatus_S2_contig9882.17881.1|Name=mRNA_E_fasciculatus_S2_contig9882.17881.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=897bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9882:1007..5422+ (Ectocarpus fasciculatus EfasUO2)
GACGACGACGAGTCGTACGACAGTTTCGAGGACGATGACGACAGCTACGA
CAGCTACGATGGCGACGACGACTCCTCAGAAGAAGACGATGACGACCTGG
AGATGGCCGCAATCGCGCAAAGAGCGAGAGAGCGACTAGAGAACGCGATA
CCGCCGGCGGGAGGACCCTCGGGCGCCAAGAGCGCTATGGCAAGTCCTAG
TCGCTATGCGGCGGAGGCCAGGAGAGAAGCTGAAGCCGCACGGAAGGACG
CGCAGAGGGCCAAGTGGGCGAAGGACAGAGAGGAACGAGGATTGCCCCCG
ATCAAAGAACCGGATGAGCAGAACCGAGGAGACGACGAGGAGCGGTTTCC
CGGTGATGCCGGCACCATGCGCGAGAAGAATCGCCAGGAGATTCGGAACA
TGGAGGCAGCACGAGGCATGACGGCGGAGGACCATCGCGAGCGGAGCCAG
CAGGCCTTCGAAGAGGCGGCCAAGGCACACAAGGAGATGCAACGCCGGGA
CTCTCAGATGAGACAGATGGGCAACAATCTTCACGACCGCGCCAAGCCTA
AAGCTGCCGACGACAAGAACAAGCTGTCCCCGGATGATCCCGACAGCAAC
CCACCTGCCAAGGCAGAGCGCCCTCCGCTGGAGCGTGGACAGGCGCAAAA
GGACCTTAACGCGGCCGAGGGGGAGCTAAAAAAGGGGGGGGGGAGGACCA
TCTCCTCAGTGGGAGGGCTAGAAGAATTCGAGAACCAGGGAAACCGGCGG
CTGTCTTCATCCCCCCAACAAGCCAACGGGGGAGAAGAGGAAGAGGAAGA
GCAAGGTCTGGGTGAAGATGGCCGCCTCGAAAGCATCGGCGATGTGATGC
AGCATGTGGGGGCGACAGGGTCGAGGAGGAAGCTGCTCAGCTGGAAG
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