mRNA_E_fasciculatus_S2_contig9876.17876.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: CobW (C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ2_9PHAE) HSP 1 Score: 556 bits (1432), Expect = 2.510e-193 Identity = 304/367 (82.83%), Postives = 314/367 (85.56%), Query Frame = 1
Query: 1 RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKGGNLRTASS-----SSXXXDRNKSRSVS----GGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIGVGMDRAGVLSTLEGLRVDGWGGXXXXXXXXXXXXXXXDGGSAEREKETERLMRILKDDPLFDAVPREAAPACAQNVVRFR 1074
RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAG GQG AGGMLVSMRHQL SADV+LLNKADLLDDQRLSKLT++V S+NPAARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKGGNLRTASS SS DRNKSRSVS GG G GHECSA KTEAPQGHLRDDGLEQ TFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDG WQGPMSLYLVVIGVGMDR GVLS LEGLRVD G GGSAE EKETERLMRIL++DPLFD+V EA P+CA++VVRFR
Sbjct: 117 RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAG--GQGGAGGMLVSMRHQLMSADVILLNKADLLDDQRLSKLTQEVTSINPAARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKGGNLRTASSLASSPSSSRHDRNKSRSVSPSVAGGGGAGHECSAEGSAEVGKTEAPQGHLRDDGLEQVTFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGMWQGPMSLYLVVIGVGMDRVGVLSALEGLRVDTSSGAGSERNCVG-------GGSAELEKETERLMRILEEDPLFDSVSCEATPSCAKHVVRFR 474
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM2_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 5.020e-150 Identity = 250/358 (69.83%), Postives = 262/358 (73.18%), Query Frame = 1
Query: 1 RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIGVGMDRAGVLSTLEGLRVDGWGGXXXXXXXXXXXXXXXDGGSAEREKETERLMRILKDDPLFDAVPREAAPACAQNVVRFR 1074
RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQG AGGMLVSMRHQLESADV+LLNKADLLDDQRLSKLTE+VASVNPAARVE CSYGKVPLHSVLDVEAPRTDIQGVSHE + SA G+ + H RD A+ +RFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDG WQGPMSL+LVVIGVGMDRAGVLS LEGLRVD G GSAE EKETER+ RIL+DDPLFD VPREA P+CAQ+VVRFR
Sbjct: 117 RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGGAGGMLVSMRHQLESADVILLNKADLLDDQRLSKLTEEVASVNPAARVEFCSYGKVPLHSVLDVEAPRTDIQGVSHEAAVAAT-----------------------------------DTSARRRWGRRR------HRRDTCGTTAS---------SRFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGPMSLHLVVIGVGMDRAGVLSALEGLRVDTSSGAGSERHCDGR-------GSAELEKETERMTRILEDDPLFDPVPREATPSCAQHVVRFR 417
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: CobW (C-terminal domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2H4_PLABS) HSP 1 Score: 157 bits (396), Expect = 1.640e-39 Identity = 107/293 (36.52%), Postives = 151/293 (51.54%), Query Frame = 1
Query: 7 DYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAP-RTDIQGVSHERVKVH---LSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIGVGMDRAGVLSTLE 873
D ++IETSGV+DP I+ L++ +G +TR RLD VVTVVD+D LS +L G + + QL +ADVV++NKADLLDD + S + V + P R ++G VPLH +LD+E Q V+HE ++ L++SS GG LR DR + V T +P DD ++ F S+ PL LA FQDW+ H MP+ V R+KG L FD +R T ++SG RR WQGP + L I +D + + S+L+
Sbjct: 175 DAIIIETSGVTDPVHIIARLERRYGPMTRCRLDCVVTVVDSDVLSERLSS-------GSSATRSWTQERQLLAADVVVVNKADLLDDDQASAVERYVREMVPGVRTLRATFGNVPLHDLLDIERDVNPSGQVVAHESGRLAQRPLAMSSAGGALRRT-------DRVPAAQV-------------------PTRSP---TADDNMQSFVFESNDPLRLAAFQDWLHHQMPSNVARMKGFLWFDFERSTFREVHLSGNRRYHVGAPDVWQGPPRVSLAFIAGSLDVSAIASSLQ 431
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: CobW (C-terminal domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VTK7_AMPQE) HSP 1 Score: 149 bits (376), Expect = 4.930e-37 Identity = 108/292 (36.99%), Postives = 148/292 (50.68%), Query Frame = 1
Query: 1 RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFET-DGEWQGPMSLYLVVIGVGMDRAGVLSTLE 873
+ DYLV+ETSGVSDP + AL++ +G++ R RLD VVTVVD D LS +L++ D+ V+ QL+ ADVVLLNK DL+ ++ L + ++S+ P + C YG VPLH +L+V Q VSHER ++S+ GG A K R +SG H GK HL D + F SS P SL+ FQ ++ +G P GV R+KG + F E R F+MSGR R + GP + LV IG + V +LE
Sbjct: 111 KIDYLVVETSGVSDPLQTISALEEEYGQMYRVRLDVVVTVVDTDYLSSRLKD--------DSLSRSVAADSQLKCADVVLLNKRDLVSEEDLEMVKSYLSSLVPGVSIYPCRYGAVPLHWILEVSEVPKGPQLVSHERTSSAYTISAVGGVKNVA---------RKGRDLSG-----H--------GKN-------HLSADEFQSIVFESSSPFSLSLFQGFLGNGFPEGVARMKGTVWFSEARSCLYSFHMSGRNRYEITPQETGLGGPPKVELVAIGKSGNMDRVFKSLE 365
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: CobW (C-terminal domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPY0_PHYSP) HSP 1 Score: 145 bits (367), Expect = 1.280e-35 Identity = 105/281 (37.37%), Postives = 141/281 (50.18%), Query Frame = 1
Query: 7 DYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDI--QGVSHERVKV--HLSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIGV 837
DYLV+ETSG +DP +V A+ + FGK+TRARLDSVVTVVD DA++ G V++R QL+ ADVVLLNK DL+D+ +L V P ARV +G+V L VLD+ AP D+ GVSHE+V+ + +S+ G + T + S DR +V K + P + + P SLA DW+ H +P G +R KGV+ E R V +SG+RRL E G WQ VVIG+
Sbjct: 125 DYLVMETSGTTDPTQLVAAVQEKFGKMTRARLDSVVTVVDGDAVAQDAANGVGP--------CAVAIR-QLQCADVVLLNKVDLMDEDKLQAARRVVQKYAPCARVYETDHGQVYLPHVLDI-APPEDVFNGGVSHEKVEAQWNTGLSALNGAV-TPAPSRLRVDRGSEVAV-----------------KQEVNTPS-----QAFASVAYERTAPTSLAAVHDWIQHHLPKGTLRAKGVMYIAELPKYRFVVQLSGKRRLEVENAGAWQSTPKTQFVVIGL 372
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: CobW (C-terminal domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CJ29_PHYNI) HSP 1 Score: 142 bits (359), Expect = 1.630e-34 Identity = 111/305 (36.39%), Postives = 147/305 (48.20%), Query Frame = 1
Query: 7 DYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALS----HQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDI--QGVSHERVKV--HLSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIGVG--------MDRAGVLSTLE 873
DYLV+ETSG +DP +V A+ + FGK+TRARLDSVVTVVD DA++ H +E A V++R QL ADVVLLNK DLLD+ +L + + P+ARV +G+V L VLD+ AP D+ GVSHE+V+ + +S+ G + ASS R++ E P F + P LA DW+ H +P G +R KGV+ E R V +SG+RRL E G WQ VVIG D A L +LE
Sbjct: 126 DYLVMETSGTTDPTQLVAAVQEKFGKMTRARLDSVVTVVDGDAVAQDALHGVEPCA------------VAVR-QLRCADVVLLNKVDLLDETKLKTARQVIEKYAPSARVYETDHGQVYLPHVLDI-APPEDVFNGGVSHEKVQAQWNTGLSALNGAVTPASSRLRVERRSE---------------------VALNEVPP----SQAFXSVAFERTEPTPLAAVHDWIQHHLPHGTLRAKGVMYISELPKYRFVVQLSGKRRLEVENAGVWQSTPKTQFVVIGFSSRSSDGEQFDEAQALESLE 391
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: Aste57867_3490 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDR1_9STRA) HSP 1 Score: 141 bits (356), Expect = 2.420e-34 Identity = 100/293 (34.13%), Postives = 138/293 (47.10%), Query Frame = 1
Query: 7 DYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPA-ARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGH-LRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIGVGMDRAGVLSTLEGL 879
DYLV+ETSG +DP ++++A+ FGK+TRARLDSVVTVVDA+AL + ++QL+ ADVVLLNK DLL +R + V P A V ++ V L +LD+ P VSHE V+ H + S RTA++ P + + D F S P++LA +V +P GV+R KG+L D+D R VF +SG++R+ T G W S L VIG G D A V + L+ L
Sbjct: 122 DYLVVETSGTTDPLALIQAIQARFGKMTRARLDSVVTVVDAEALVES--------------DLCAVAKNQLQCADVVLLNKMDLLAPERHATARAAVQEFAPVGAHVYETTFCDVYLPRILDISPPDGIYNAVSHESVQAHWNTSPLSTLRRTAAT------------------------------------PDAYAVARDTWSTDVFESKTPIALAALHAYVASRLPPGVLRAKGILYLDDDPTNRYVFQLSGKQRIQVTTTGPWPCAPSTQLAVIGTGFDMAAVRADLQSL 364
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: CobW (C-terminal domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UBR7_9STRA) HSP 1 Score: 137 bits (344), Expect = 4.860e-34 Identity = 99/286 (34.62%), Postives = 144/286 (50.35%), Query Frame = 1
Query: 7 DYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDI--QGVSHERVKV--HLSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSL------PLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIG 834
DYLV+ETSG +DP +V A+ + FGK+TRARLDSVVTV+D DA++ + D V++R QL ADVVLLNK DLLD ++L + + P+AR+ +G+V L VLD+ AP D+ GV+HE V+ + +S+ G + A S + + E +++D ++ +S+ P++LA DW+ H +P G +R KGV+ E R V +SG+RRL E G WQ VVIG
Sbjct: 37 DYLVMETSGTTDPTQLVAAVQEKFGKMTRARLDSVVTVMDGDAVAQDAAK--------DVEPCAVAVR-QLRCADVVLLNKVDLLDAEQLQTARKVIEKYAPSARIYETDHGQVYLPHVLDI-APPEDVFNGGVTHENVQARWNTGLSALNGAVTPAPS------------------------------RLRVEKGSDVVKNDDVQSTQAFASVAYERTEPIALAAAHDWIQHHLPPGTLRAKGVMYIAELPKYRFVVQLSGKRRLEVENAGVWQSTPKTQFVVIG 282
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: Cobalamin ((Vitamin B12) biosynthesis CobW n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYP9_9STRA) HSP 1 Score: 140 bits (352), Expect = 3.190e-33 Identity = 105/292 (35.96%), Postives = 146/292 (50.00%), Query Frame = 1
Query: 7 DYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSM--------------RHQLESADVVLLNKADLLDDQR-LSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKGGNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPA-GVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIG 834
DYLVIETSGV+DPE I++ALD+ FGK+TRARLDSVVT+VDAD L +L ++ A D G +S R Q+E ADV++LNK DL+ D L L + +NP AR+ + +PL VLDVE P ++HE L + K LR+ S + K+ +G + +A ++ ++ HL +G+ TF S P L + Q + H PA V+R KG L E R ++SGRRR +G W +V IG
Sbjct: 142 DYLVIETSGVTDPERIIQALDEKFGKMTRARLDSVVTMVDADVLHAELVDSTPA--VRDTRGATLSAHVPSASHPGIPPTRRRQIECADVIILNKTDLVKDLAYLDDLEAFLRKLNPLARIHRTRFADLPLPCVLDVELPDLGAGSMTHEESNA-LYATRKVSTLRSEPSQAVSSRARKTDLFTGAA-----TAASDQNSRS-------HLVSEGISAFTFESKSPFLLRKLQRFFSHVFPAEAVIRSKGFLYVRELAGRRVALSISGRRRFHLSDEGTWSSAPGTQVVFIG 418
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Match: CobW (C-terminal domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXQ5_GLOUD) HSP 1 Score: 138 bits (347), Expect = 6.550e-33 Identity = 96/280 (34.29%), Postives = 134/280 (47.86%), Query Frame = 1
Query: 1 RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLEEAAGAGGQGDAGGMLVSMRHQLESADVVLLNKADLLDDQRLSKLTEKVASVNPAARVECCSYGKVPLHSVLDVEAPRTDIQGVSHERVKVHLSVSSKG--GNLRTASSSSXXXDRNKSRSVSGGSGDGHECSAGEEGGKTKTEAPQGHLRDDGLEQATFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGEWQGPMSLYLVVIG 834
++DYLV+ETSG DP +V A+ + FGK+TRARLDSVV VVD DA++ + + +S QL ADVV+LNK DL+DD ++ ++ P ARV + ++ L VLD+ P VSHE V+ H + +S G G LR SSS N S + SG D + S P LA W+ +P GV+R KG++ +D +R V MSG++R+ E G W+ VVIG
Sbjct: 121 QFDYLVMETSGTMDPTQLVAAVQEKFGKMTRARLDSVVVVVDGDAMAQDALQGV------SPCDVAIS---QLACADVVVLNKIDLMDDAAKARAKSVISEYAPLARVYETDHCQIYLPHVLDISPPEDIYNAVSHEHVQAHWNTASDGALGKLRLLDSSSSS---NISVASSG---------------------------SDAFASVAYEQSTPTPLAAVHCWLRSHLPQGVLRAKGIIYLADDPKSRYVVQMSGKKRIEVENAGPWRAAPKTQFVVIG 361 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9876.17876.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9876.17876.1 >prot_E_fasciculatus_S2_contig9876.17876.1 ID=prot_E_fasciculatus_S2_contig9876.17876.1|Name=mRNA_E_fasciculatus_S2_contig9876.17876.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=358bp RYDYLVIETSGVSDPESIVRALDKTFGKLTRARLDSVVTVVDADALSHQLback to top mRNA from alignment at E_fasciculatus_S2_contig9876:3..4170- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9876.17876.1 ID=mRNA_E_fasciculatus_S2_contig9876.17876.1|Name=mRNA_E_fasciculatus_S2_contig9876.17876.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4168bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9876:3..4170- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9876:3..4170- >mRNA_E_fasciculatus_S2_contig9876.17876.1 ID=mRNA_E_fasciculatus_S2_contig9876.17876.1|Name=mRNA_E_fasciculatus_S2_contig9876.17876.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1074bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9876:3..4170- (Ectocarpus fasciculatus EfasUO2)back to top |