mRNA_E_fasciculatus_S2_contig9873.17873.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE) HSP 1 Score: 473 bits (1217), Expect = 2.200e-163 Identity = 259/348 (74.43%), Postives = 271/348 (77.87%), Query Frame = 1
Query: 1 MAGCVSGCRHPLWGGNGACTTVSGASTCVCDWGYASRDSMGRSSCVPRSVLVTAYATIAVTSLFTSIFLLWHVNKFHHLSRVHRSSRPALMRFRVLLCG-----------------------------SFFAVGMTCNFFRAMAMGGSLSLPELYVLQTNYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVV----------------------LTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
M CV GCRHPLWGGNGACTTVSG STC+CD GYASRDSMGRSSCVPRSVLV AYATIAVTSL TSIFLLWH +KF LSR+H+S+R ALMRFRVLLCG SFFA GM CNF A AMGGSLSLPELYVLQTNY+VFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLAD+F+VF ALSMGLLV IS IG FSFSGA+WPFQAVDTIIVLGAVTT V LT V+AHQI+GCIDDARAKSSSQSAK FYAKTKAGI KQI GYF+LAGANASSAIAFTYTATGRATPIIPFS YVRV
Sbjct: 1 MTACVRGCRHPLWGGNGACTTVSGTSTCLCDSGYASRDSMGRSSCVPRSVLVMAYATIAVTSLITSIFLLWHASKFRQLSRLHQSTRSALMRFRVLLCGREKPLKSTSIRPLPLLVHRSRLCCRRLYRSFFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADEFKVFQALSMGLLVGISVIGSFSFSGAQWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSTYVRV 348
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI) HSP 1 Score: 322 bits (825), Expect = 9.890e-107 Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 1
Query: 316 MTCNFFRAMAMGGSLSLPELYVLQTNYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVVLTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
M CNF A AMGGS SLPELYVLQTNY+VFLPVLMFGIPI+VDFWVQSLPMHLLP+HSFLAKAKVLADKF VF ALSMGLLVSIS +G FSFSGAKWPFQAVDTIIVLGAVTTV LTGVLAHQI+GCIDDARAKSSSQSAK FY KTKAGI KQIAGYF+LAGANASSAIAFTYTATGRAT IIPFSIYVRV
Sbjct: 1 MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIIVDFWVQSLPMHLLPNHSFLAKAKVLADKFNVFQALSMGLLVSISVVGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGVLAHQIIGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATAIIPFSIYVRV 192
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN6_ECTSI) HSP 1 Score: 286 bits (732), Expect = 1.640e-92 Identity = 159/207 (76.81%), Postives = 170/207 (82.13%), Query Frame = 1
Query: 271 MRFRVLLCGSFFAVGMTCNFFRAMAMGGSLSLPELYVLQTNYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVVLTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
MRFRVLLCG + G + SLPELYVLQT+YSVFLPVLMFGIPIVVDFW QSLPMHLLPDHSFLAKAKVLA KF+ ALSMGLLV IS IG FSF GA+WPF AVDTI V+GA +TV LT ++AHQI+GCIDDARAKSSSQSAK FY KTKAGI KQIAGYF+LAGANASSAI FTYTATGRAT IIPFSIYVRV
Sbjct: 1 MRFRVLLCGR-----NGLQLLLGDSDGRNRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWAQSLPMHLLPDHSFLAKAKVLAGKFKAVQALSMGLLVGISLIGSFSFGGAEWPFHAVDTIAVVGAASTVGLTDLVAHQIVGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAITFTYTATGRATAIIPFSIYVRV 202
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML4_9PHAE) HSP 1 Score: 255 bits (652), Expect = 1.990e-80 Identity = 144/184 (78.26%), Postives = 150/184 (81.52%), Query Frame = 1
Query: 406 LPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVV----------------------LTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
LPVLMFGIPIVVDFWVQSLPMHLLPDHS LAKAKVLAD+F VF ALSMGLLV I+ IG FSFSGA+WPFQAVDTIIVLGAVTT V LT V+AHQI+GCIDDARAKSSSQSAK FYAKTKAGI KQI GYF+LAGANASSAIAFTYTATGRATPIIPFSI VRV
Sbjct: 3 LPVLMFGIPIVVDFWVQSLPMHLLPDHSLLAKAKVLADEFNVFQALSMGLLVGIALIGSFSFSGARWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSIDVRV 186 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9873.17873.1 >prot_E_fasciculatus_S2_contig9873.17873.1 ID=prot_E_fasciculatus_S2_contig9873.17873.1|Name=mRNA_E_fasciculatus_S2_contig9873.17873.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=415bp MAGCVSGCRHPLWGGNGACTTVSGASTCVCDWGYASRDSMGRSSCVPRSVback to top mRNA from alignment at E_fasciculatus_S2_contig9873:1610..5018+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9873.17873.1 ID=mRNA_E_fasciculatus_S2_contig9873.17873.1|Name=mRNA_E_fasciculatus_S2_contig9873.17873.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3409bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:1610..5018+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9873:1610..5018+ >mRNA_E_fasciculatus_S2_contig9873.17873.1 ID=mRNA_E_fasciculatus_S2_contig9873.17873.1|Name=mRNA_E_fasciculatus_S2_contig9873.17873.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1245bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:1610..5018+ (Ectocarpus fasciculatus EfasUO2)back to top |