mRNA_E_fasciculatus_S2_contig9873.17873.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9873.17873.1
Unique NamemRNA_E_fasciculatus_S2_contig9873.17873.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE)

HSP 1 Score: 473 bits (1217), Expect = 2.200e-163
Identity = 259/348 (74.43%), Postives = 271/348 (77.87%), Query Frame = 1
Query:    1 MAGCVSGCRHPLWGGNGACTTVSGASTCVCDWGYASRDSMGRSSCVPRSVLVTAYATIAVTSLFTSIFLLWHVNKFHHLSRVHRSSRPALMRFRVLLCG-----------------------------SFFAVGMTCNFFRAMAMGGSLSLPELYVLQTNYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVV----------------------LTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
            M  CV GCRHPLWGGNGACTTVSG STC+CD GYASRDSMGRSSCVPRSVLV AYATIAVTSL TSIFLLWH +KF  LSR+H+S+R ALMRFRVLLCG                             SFFA GM CNF  A AMGGSLSLPELYVLQTNY+VFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLAD+F+VF ALSMGLLV IS IG FSFSGA+WPFQAVDTIIVLGAVTT V                      LT V+AHQI+GCIDDARAKSSSQSAK FYAKTKAGI KQI GYF+LAGANASSAIAFTYTATGRATPIIPFS YVRV
Sbjct:    1 MTACVRGCRHPLWGGNGACTTVSGTSTCLCDSGYASRDSMGRSSCVPRSVLVMAYATIAVTSLITSIFLLWHASKFRQLSRLHQSTRSALMRFRVLLCGREKPLKSTSIRPLPLLVHRSRLCCRRLYRSFFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADEFKVFQALSMGLLVGISVIGSFSFSGAQWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSTYVRV 348          
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 9.890e-107
Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 1
Query:  316 MTCNFFRAMAMGGSLSLPELYVLQTNYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVVLTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
            M CNF  A AMGGS SLPELYVLQTNY+VFLPVLMFGIPI+VDFWVQSLPMHLLP+HSFLAKAKVLADKF VF ALSMGLLVSIS +G FSFSGAKWPFQAVDTIIVLGAVTTV LTGVLAHQI+GCIDDARAKSSSQSAK FY KTKAGI KQIAGYF+LAGANASSAIAFTYTATGRAT IIPFSIYVRV
Sbjct:    1 MACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIIVDFWVQSLPMHLLPNHSFLAKAKVLADKFNVFQALSMGLLVSISVVGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGVLAHQIIGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAIAFTYTATGRATAIIPFSIYVRV 192          
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN6_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 1.640e-92
Identity = 159/207 (76.81%), Postives = 170/207 (82.13%), Query Frame = 1
Query:  271 MRFRVLLCGSFFAVGMTCNFFRAMAMGGSLSLPELYVLQTNYSVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVVLTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
            MRFRVLLCG               + G + SLPELYVLQT+YSVFLPVLMFGIPIVVDFW QSLPMHLLPDHSFLAKAKVLA KF+   ALSMGLLV IS IG FSF GA+WPF AVDTI V+GA +TV LT ++AHQI+GCIDDARAKSSSQSAK FY KTKAGI KQIAGYF+LAGANASSAI FTYTATGRAT IIPFSIYVRV
Sbjct:    1 MRFRVLLCGR-----NGLQLLLGDSDGRNRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWAQSLPMHLLPDHSFLAKAKVLAGKFKAVQALSMGLLVGISLIGSFSFGGAEWPFHAVDTIAVVGAASTVGLTDLVAHQIVGCIDDARAKSSSQSAKVFYDKTKAGILKQIAGYFVLAGANASSAITFTYTATGRATAIIPFSIYVRV 202          
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML4_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 1.990e-80
Identity = 144/184 (78.26%), Postives = 150/184 (81.52%), Query Frame = 1
Query:  406 LPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGAKWPFQAVDTIIVLGAVTTVV----------------------LTGVLAHQIMGCIDDARAKSSSQSAKDFYAKTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRV 891
            LPVLMFGIPIVVDFWVQSLPMHLLPDHS LAKAKVLAD+F VF ALSMGLLV I+ IG FSFSGA+WPFQAVDTIIVLGAVTT V                      LT V+AHQI+GCIDDARAKSSSQSAK FYAKTKAGI KQI GYF+LAGANASSAIAFTYTATGRATPIIPFSI VRV
Sbjct:    3 LPVLMFGIPIVVDFWVQSLPMHLLPDHSLLAKAKVLADEFNVFQALSMGLLVGIALIGSFSFSGARWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIGCIDDARAKSSSQSAKVFYAKTKAGILKQITGYFVLAGANASSAIAFTYTATGRATPIIPFSIDVRV 186          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9873.17873.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized2.200e-16374.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.890e-10789.58protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.640e-9276.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.990e-8078.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9873contigE_fasciculatus_S2_contig9873:1610..5018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1245
Hectar predicted targeting categorysignal anchor
Exons6
Cds size1245
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9873.17873.1prot_E_fasciculatus_S2_contig9873.17873.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9873 1610..5018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.2020717-CDS-E_fasciculatus_S2_contig9873:1609..19081696842630.2020717-CDS-E_fasciculatus_S2_contig9873:1609..1908Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 1610..1908 +
1696842630.213923-CDS-E_fasciculatus_S2_contig9873:2372..25441696842630.213923-CDS-E_fasciculatus_S2_contig9873:2372..2544Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 2373..2544 +
1696842630.2250042-CDS-E_fasciculatus_S2_contig9873:3049..32321696842630.2250042-CDS-E_fasciculatus_S2_contig9873:3049..3232Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 3050..3232 +
1696842630.2366285-CDS-E_fasciculatus_S2_contig9873:3589..36521696842630.2366285-CDS-E_fasciculatus_S2_contig9873:3589..3652Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 3590..3652 +
1696842630.24844-CDS-E_fasciculatus_S2_contig9873:4169..43401696842630.24844-CDS-E_fasciculatus_S2_contig9873:4169..4340Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 4170..4340 +
1696842630.2599154-CDS-E_fasciculatus_S2_contig9873:4661..50181696842630.2599154-CDS-E_fasciculatus_S2_contig9873:4661..5018Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9873 4662..5018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9873.17873.1

>prot_E_fasciculatus_S2_contig9873.17873.1 ID=prot_E_fasciculatus_S2_contig9873.17873.1|Name=mRNA_E_fasciculatus_S2_contig9873.17873.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=415bp
MAGCVSGCRHPLWGGNGACTTVSGASTCVCDWGYASRDSMGRSSCVPRSV
LVTAYATIAVTSLFTSIFLLWHVNKFHHLSRVHRSSRPALMRFRVLLCGS
FFAVGMTCNFFRAMAMGGSLSLPELYVLQTNYSVFLPVLMFGIPIVVDFW
VQSLPMHLLPDHSFLAKAKVLADKFRVFPALSMGLLVSISGIGLFSFSGA
KWPFQAVDTIIVLGAVTTVVLTGVLAHQIMGCIDDARAKSSSQSAKDFYA
KTKAGIRKQIAGYFLLAGANASSAIAFTYTATGRATPIIPFSIYVRVLTG
VLAFGPFIVFTRFGSSATRRPQPPPSPQQSQPPAHLPLSPQEEARRQEKG
ARTDDARPLFQRATSGVSLLFKRMLDRMESGEAVVAVTCEDPGIQGSRSE
YDPRGGGQPPKSKE*
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mRNA from alignment at E_fasciculatus_S2_contig9873:1610..5018+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9873.17873.1 ID=mRNA_E_fasciculatus_S2_contig9873.17873.1|Name=mRNA_E_fasciculatus_S2_contig9873.17873.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3409bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:1610..5018+ (Ectocarpus fasciculatus EfasUO2)
ATGGCAGGCTGCGTCAGTGGGTGCCGACACCCGCTGTGGGGTGGAAACGG GGCTTGTACAACCGTCTCCGGGGCTAGCACGTGCGTGTGTGACTGGGGAT ATGCATCGAGAGACTCAATGGGCCGTTCGTCGTGTGTCCCGAGGTCTGTT CTTGTCACGGCATACGCCACAATCGCTGTCACTTCTCTCTTCACCTCGAT ATTTCTCCTGTGGCATGTGAACAAGTTTCACCACCTTTCGAGAGTTCATC GGAGCTCCAGACCAGCCCTCATGCGCTTTCGGGTGCTGCTCTGTGGCAGG TGCGTGTATAGACTATTCGTATTTGAAGGGAAATTTTACTGCTACATGTA GTCTACGTGGTTTAAAAACACCTGTCGGAAACACGACCTCAGTTCGTCGC CGGTGCACGAAGTTGTTGCCCAGTCGCAGATGGAAGTACATGTAGATGAG ATCCGAATCACACCTCTAGTTTTGGTTGAGGCTGGGGTTCTTCGGCCCTA CCAATGGCAGCTACACGTAGGGACTCAATTATTTTTTCCTAATAGACTAA CCCATCAACGCGTGAGTGAATTGAGCCGACAACACGTAGACTACGTGTGT TCTGACAAATTGTTCACTTAGTGTCGAGCATGAAAATCTTGGCTGCCAAG TTTTTAAGCGTGCGCGCAAACTGCAGAGAAAAACCTCTCAAGAGCACCTC CGCCCTCTGTCCCTTCTTGTCCATCGCCCCCTACTATGCTCTCTGTCGCC GTTGGCACCGAAGCTTCTTTGCCGTAGGAATGACGTGCAACTTCTTCCGG GCGATGGCAATGGGCGGTAGCCTTTCACTGCCGGAGTTGTATGTTTTACA AACAAATTATTCGGTGTTTCTCCCGGTTCTGATGTTCGGAATCCCGATTG TCGTGGACTTCTGGGTGCAGAGCCTGCCGATGCATGTGAGCGACCAAGCC ATTAGCATATACTACAATATACAAGTATATGGACAAGAAACCATATGTAT TTGCCAGTCGCTGCGTTGGTGTGCTCTGTCCGACGGCTGTACGCTTCGCT GCACAACTGCAACATCCATCGGCTGCGGAGACTTGCCTACAGAGTCATCA TGGGTGGTGCGGGTCGCATCCCACTCGGTGTAGGAGTGGCGCTCCGTTTC GCAAAGATGTCGTTGTGGATGATATCTTTTGCCGCATGGCCTGTGTTAAG ATGTACAGCATATCCACTATGCTAAAAGGCAGCGCTGACTTTTAGCATCG TGGATATGCTGTACACCTTAATAAAAGTAAGCTGCCTTGAAGCATAGTGG ATATGCTGTACTTTTTAACAGTCTGTCTGTCGCGAAAGAAAAGAAGGGGC CAATCACCGAGAACGATAAGACGCCCGCAACAAAAAGGGTCACCGTCGCT AAGCCCCTCTCACCATATTTCCCCGCCTGCGATTCTGCAGCTGCTTCCCG ACCACAGTTTCCTGGCGAAGGCGAAGGTTCTGGCAGATAAGTTCAGAGTC TTCCCAGCGCTCAGCATGGGGCTCCTGGTCAGCATCTCCGGGATTGGCTT GTTCTCTTTCAGTGGCGCGAAGTGGCCGTTTCAAGCCGTTGACACGATCA TCGTCCTCGGTGCGGTCACAACGGTGAGCCCTGTTGCCAGCCAATTAGAG CCGCCGGACTGTTTTTTCTTTCCCGCCCCGTCAACGAGTTGTCGTCGTCG TCGTCGTTGTCGTCGTCGTCGTTAGGACTTAGATCACGGAGGGAGCGAGC AGGAGTAGGGAAGGAGGTGGGGGGTGATACGGAAGGATGGTGGGGGTTCG GTCTCGAGGCAAGAAAGCCTCCGCAGTATCCCAGCTCTACTACGCAGAGC GGCTGCATGGGGAGAAACGAACGATACTGCACAGAAAATACTCAGGGTGA TGAGTCAAAACGCACATGTATCCTACATCGTACGTGCCCGCTTCGTTCGT TTGCTCGGTGTGATTTTCTGGAATCCAAAGGTTGTGCTCACGGGCGTCCT GGCACACCAAATTATGGGCTGCATCGACGACGCCCGGGCGAAGGTGAGCC GCGCCCAGGGTCTTATGCGGAGTTGTTCTGGAAGTAATGGGTGGGACTCG CCGACAATGAGCGCCACCACGGATCTGCCTGCGCGATGCTCATGTTCTTG CGTGGTCCGTGGCCAACCAACGGCCACCGCAGAGGGCCTTGGGCTAGATG TGGTTATGGCGCATCACGGTTTGTCCTCATGCTTTCCTATCCTCTGAACC GTTTGAAGAGTGGTTGTTGAAAGACAGAAACATGTAGCTCAAATAACAAG AGGCGCTCTGATTGATGTGGAGCCAACCTGCTAGCCGATGCATGTAGGCA GAGATTATTTTGTGTTTCTGTGGATGAGAGCGATTGAGGAAGGGGGGGAA AGAGAAAATGAGAACAAACAATTTGCGGCAGAGGGTGCACCGGTGATCCT TTTGAGGTCGGCTTCCTTGTGTGGTCTGCATGCTCTCATCACGCTACGCA TATCGCGCCCCGACGCTCGTATTCGCACACTTTTCTGCCCCCTTCGCCCA AACAATGCAGTCATCGTCGCAGTCGGCAAAGGATTTCTATGCCAAGACAA AGGCCGGCATCCGCAAGCAGATTGCGGGCTACTTCCTACTTGCGGGGGCT AACGCTTCCTCAGCAATCGCTTTCACCTACACGGCGACCGGGCGAGCGAC TCCGATCATCCCCTTCAGCATTTATGTACGCGTGAGCCACACCCAAAGTT ATTGCAGTAGGTTCACTTTGCCTCACATTCAACCATCGTACATGAAAAAC AAACGTGATCCGTATCACACGCCCCCGGCGATCCAGACCCGTGGTCAGCT TGCCTCGGAAGGGGCGGGAGGTTCGGCTTTGAAATGGCGCCGATAGGCGA AAAGCATGTTTACATACATACATACTGGAGGCACATCGCCTGAGTGAAAT ACTTCAAACAAACAAGCGAATGTCCTCTACGCTACGAATCCATTGTGTAT GATCTCAAACCTCTTCTGGCACCATCACCACGGCCGTAAACGACTCAACA AGGTGCTAACCGGAGTGCTAGCGTTCGGACCCTTCATCGTCTTCACAAGG TTCGGCTCCTCAGCGACACGGCGGCCACAGCCGCCACCCTCGCCACAGCA GTCGCAACCCCCAGCACACTTGCCACTTTCGCCACAGGAGGAGGCGCGTC GGCAGGAGAAGGGGGCGAGAACCGATGACGCCCGTCCACTTTTTCAAAGA GCGACCTCCGGAGTATCGTTGCTGTTCAAGCGGATGTTGGACCGCATGGA GAGCGGGGAGGCGGTTGTGGCGGTGACATGCGAGGACCCAGGGATTCAAG GGTCGAGAAGTGAATACGACCCCCGGGGGGGGGGGCAACCTCCCAAATCA AAGGAATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9873:1610..5018+

>mRNA_E_fasciculatus_S2_contig9873.17873.1 ID=mRNA_E_fasciculatus_S2_contig9873.17873.1|Name=mRNA_E_fasciculatus_S2_contig9873.17873.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1245bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9873:1610..5018+ (Ectocarpus fasciculatus EfasUO2)
ATGGCAGGCTGCGTCAGTGGGTGCCGACACCCGCTGTGGGGTGGAAACGG
GGCTTGTACAACCGTCTCCGGGGCTAGCACGTGCGTGTGTGACTGGGGAT
ATGCATCGAGAGACTCAATGGGCCGTTCGTCGTGTGTCCCGAGGTCTGTT
CTTGTCACGGCATACGCCACAATCGCTGTCACTTCTCTCTTCACCTCGAT
ATTTCTCCTGTGGCATGTGAACAAGTTTCACCACCTTTCGAGAGTTCATC
GGAGCTCCAGACCAGCCCTCATGCGCTTTCGGGTGCTGCTCTGTGGCAGC
TTCTTTGCCGTAGGAATGACGTGCAACTTCTTCCGGGCGATGGCAATGGG
CGGTAGCCTTTCACTGCCGGAGTTGTATGTTTTACAAACAAATTATTCGG
TGTTTCTCCCGGTTCTGATGTTCGGAATCCCGATTGTCGTGGACTTCTGG
GTGCAGAGCCTGCCGATGCATCTGCTTCCCGACCACAGTTTCCTGGCGAA
GGCGAAGGTTCTGGCAGATAAGTTCAGAGTCTTCCCAGCGCTCAGCATGG
GGCTCCTGGTCAGCATCTCCGGGATTGGCTTGTTCTCTTTCAGTGGCGCG
AAGTGGCCGTTTCAAGCCGTTGACACGATCATCGTCCTCGGTGCGGTCAC
AACGGTTGTGCTCACGGGCGTCCTGGCACACCAAATTATGGGCTGCATCG
ACGACGCCCGGGCGAAGTCATCGTCGCAGTCGGCAAAGGATTTCTATGCC
AAGACAAAGGCCGGCATCCGCAAGCAGATTGCGGGCTACTTCCTACTTGC
GGGGGCTAACGCTTCCTCAGCAATCGCTTTCACCTACACGGCGACCGGGC
GAGCGACTCCGATCATCCCCTTCAGCATTTATGTACGCGTGCTAACCGGA
GTGCTAGCGTTCGGACCCTTCATCGTCTTCACAAGGTTCGGCTCCTCAGC
GACACGGCGGCCACAGCCGCCACCCTCGCCACAGCAGTCGCAACCCCCAG
CACACTTGCCACTTTCGCCACAGGAGGAGGCGCGTCGGCAGGAGAAGGGG
GCGAGAACCGATGACGCCCGTCCACTTTTTCAAAGAGCGACCTCCGGAGT
ATCGTTGCTGTTCAAGCGGATGTTGGACCGCATGGAGAGCGGGGAGGCGG
TTGTGGCGGTGACATGCGAGGACCCAGGGATTCAAGGGTCGAGAAGTGAA
TACGACCCCCGGGGGGGGGGGCAACCTCCCAAATCAAAGGAATAG
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