Homology
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)
HSP 1 Score: 342 bits (876), Expect = 6.000e-114
Identity = 171/178 (96.07%), Postives = 177/178 (99.44%), Query Frame = 2
Query: 488 MAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFRIRSKRTVLHQVCHI 1021
MAEILLKEHDMRAQS+GTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDG HVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSA+DSAAAAGDVLDLCKMLEDCDDLDS+A++LLN+FRIRSKRTVLHQVCHI
Sbjct: 1 MAEILLKEHDMRAQSFGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSANDSAAAAGDVLDLCKMLEDCDDLDSNAAELLNDFRIRSKRTVLHQVCHI 178
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB5_ECTSI)
HSP 1 Score: 309 bits (791), Expect = 9.610e-98
Identity = 241/264 (91.29%), Postives = 248/264 (93.94%), Query Frame = 2
Query: 35 MKRARDESK-IVDTGNHQAVVAPARAAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AKREPQQELEGWRATANAILSAGVKDEDGGGSSNNKGENTGSSRKSFAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDL 808
MKRARD+S IVDTGNH AVV PARAA S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKREPQQELEGWRA ANAILSAGVK EDG GS ++KGE++GSSRKSFAVVCSSNVNRSIMAEILLKEHD+RAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVE +
Sbjct: 1 MKRARDQSSTIVDTGNHHAVVGPARAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKREPQQELEGWRAAANAILSAGVK-EDGAGSRSSKGESSGSSRKSFAVVCSSNVNRSIMAEILLKEHDIRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEGI 263
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)
HSP 1 Score: 242 bits (617), Expect = 5.440e-72
Identity = 132/252 (52.38%), Postives = 178/252 (70.63%), Query Frame = 2
Query: 338 EGWRATANAIL-SAGVK-----------DEDGG----GSSNNKGENTGS--------SRKSFAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFRIRSKRTVLHQVCHI 1021
+ WRATA+ +L AG++ DE+G G+ K + G+ S++ FAVVCS+N NRS+MA LLKEH+ + +SYGTGREVRLPGKD SP+ FPFGTPY +I D L ++EALF +N++L L+ RNA K AP+R+Q ++G +A FDVV+CFE+RVF LVVEDLQ RDP+TFKPLHV++MTI+DS ++SAAAA VL+LC+ML+ LD + + +L F ++KRTVLHQVCH+
Sbjct: 141 DNWRATADEVLVKAGLEGGDKEGKSRAGDEEGSSTRRGNDKEKQQQPGATKTMAAARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEDLQSRDPETFKPLHVINMTIKDSFEESAAAADSVLELCRMLDGVSQLDDETAGVLEVFTRKTKRTVLHQVCHV 392
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA)
HSP 1 Score: 201 bits (511), Expect = 6.380e-59
Identity = 93/189 (49.21%), Postives = 135/189 (71.43%), Query Frame = 2
Query: 455 VVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFRIRSKRTVLHQVCHI 1021
+VCSSNVNRS++ +I+L++ +M S+G G +V+LPG+ P FPFGTPY+E+ D L ++ L+ RN VL LL R+A TKR PERWQ L V ++DVV+CFE+R+FD+ V+DLQ RD FKP+ ++S+ ++D+ D+ A DV LC+MLE C+DL+SD S ++ F+ +KR +LHQVCH+
Sbjct: 1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=4 Tax=Naviculales TaxID=38748 RepID=A0A7S2Y8T2_9STRA)
HSP 1 Score: 169 bits (427), Expect = 5.200e-46
Identity = 87/202 (43.07%), Postives = 132/202 (65.35%), Query Frame = 2
Query: 437 SRKSFAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFL--ARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDP-DTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEF-RIRSKRT---VLHQVCHI 1021
S+ SF VVCSSN+NRS+ A ++L +R +SYGTG +VRLPG+ + P+ F FGTPY E+ + ++ F RN VL L +R A KRAP+RWQ + E ++ ++V+ FE R+FD V+EDLQ R P + F+P+HV+ + +D+ ++A L LC LE C+DLD +A+++++EF R R T +L+QVC++
Sbjct: 26 SKLSFGVVCSSNINRSMEAHVVLGNAGLRVESYGTGTQVRLPGRTAMEPRIFKFGTPYEEMHQSMNVTPEDTTYFTRNGVLQLCQRGAAVKRAPQRWQDMASEDISKHNIVIAFEERIFDAVIEDLQLRQPTEDFRPMHVICLDTKDNPHEAARQGIVALRLCWRLEHCEDLDLEAAEIIDEFQRERDSETNIKILYQVCYL 227
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5X4_9STRA)
HSP 1 Score: 165 bits (417), Expect = 1.550e-44
Identity = 87/202 (43.07%), Postives = 132/202 (65.35%), Query Frame = 2
Query: 437 SRKSFAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLA--RQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDP-DTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFRI-RSKRT---VLHQVCHI 1021
S+ SF VCSSN+NRS+ A ++L + +SYGTG +VRLPG+ + P+ F FGTPY ++ +A +++A F+RN VL L R A KRAP+RWQ + E +A DV++ FE R+FD VVEDLQ R+P F P+HV+ + +D+ ++A L LC MLE +DL ++A+++++ F+ RS T +L+QVC++
Sbjct: 27 SKLSFGTVCSSNINRSMEAHVVLGNAGLSVESYGTGTQVRLPGRTAMEPRIFKFGTPYEDMYASMAVTPEDQAYFQRNGVLQLCRRGAAVKRAPQRWQDVPSEDIAKHDVIIAFEERIFDAVVEDLQMREPTQEFAPMHVICLDTKDNPHEAARQGLVALRLCWMLEHAEDLTTEAAEIIDRFQEERSSETNIKILYQVCYL 228
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FXY9_9STRA)
HSP 1 Score: 165 bits (417), Expect = 2.400e-44
Identity = 85/201 (42.29%), Postives = 130/201 (64.68%), Query Frame = 2
Query: 434 SSRKSFAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDP-DTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFRI----RSKRTVLHQVCHI 1021
SS+ SF VVCSSN+NRS+ ++L ++ +SYGTG VRLPG+ + P+ F FGTPY ++ + LA ++EA F +N VL L R + K AP+RWQ +AS DVV+ FE R+FD VVEDLQ RDP D F P+HV+ + +D+ ++ L+LC +LE+ DL ++A +++ F++ ++ VL+Q+C++
Sbjct: 43 SSKLSFGVVCSSNINRSMEGHVVLGNAGLKVESYGTGSTVRLPGRSAMDPRIFKFGTPYAQMYESLATEDEAFFFQNGVLQLCRRGSGVKVAPQRWQDTPSTAIASHDVVIAFEERIFDAVVEDLQTRDPTDDFAPIHVICLDTKDNPHEAHIQGRVCLELCWLLENAGDLVAEAPEIVENFQMVHMSHTQIKVLYQLCYL 243
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYP3_9CHLO)
HSP 1 Score: 162 bits (410), Expect = 5.960e-44
Identity = 85/195 (43.59%), Postives = 128/195 (65.64%), Query Frame = 2
Query: 431 GSSRKSFAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFRIRSKRTVLHQVC 1015
G+ +K FA+VC+SN NRS+ A +LK ++ + SYG G V+LPG + KSP ++PFGTPY I D L +++E L+ RN +L +LERN T K APERWQ ++ FDVV+ FE VF+ VVEDLQ RD T + VV++ ++DS ++A AA +++C+MLE +D +S+ +++ F+ R L+ +C
Sbjct: 2 GNMKKRFAMVCASNQNRSMEAHCMLKNNNFQVSSYGVGAHVKLPGPNQKSPNTYPFGTPYQYIYDDLKKKDEELYIRNGLLPMLERNITVKTAPERWQ----DNRDQFDVVLTFEESVFEKVVEDLQNRDQSTGASVLVVNLDVKDSPQEAALAAPLAMNICEMLEASEDWESEVDLVVDRFQQTYGRRPLYTIC 192
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8R8X9_9STRA)
HSP 1 Score: 162 bits (411), Expect = 2.600e-43
Identity = 85/202 (42.08%), Postives = 129/202 (63.86%), Query Frame = 2
Query: 437 SRKSFAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLAR--QNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDP-DTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFR----IRSKRTVLHQVCHI 1021
S+ SF VVCSSN+NRS+ ++L +R +SYGTG VRLPGK + P+ F FGTPY E+ + LA ++EA F N VL L R A K AP+RWQ + + +A+ DVV+ FE R++D VVEDLQ R+P ++F+P+HV+ + +D+ ++ L+LC +LE DDL +A ++ F+ ++ VL+Q+C++
Sbjct: 55 SKLSFGVVCSSNINRSMEGHVVLGNAGLRVESYGTGTSVRLPGKSALEPRVFKFGTPYEEMYNSLAATPEDEAFFTHNGVLQLCRRGAAVKTAPQRWQDMSSDFIATHDVVIAFEERIYDAVVEDLQTREPTESFEPIHVICLDTKDNPHEAKLQGRVALELCWLLEAADDLVVEAPGIVESFQDERMTHTQIKVLYQLCYL 256
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Match: RNA (polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T7N9_9CHLO)
HSP 1 Score: 160 bits (405), Expect = 3.620e-43
Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = 2
Query: 449 FAVVCSSNVNRSIMAEILLKEHDMRAQSYGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGEHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDASKLLNEFRIRSKRTVLHQVC 1015
FA+VC+SN NRS+ A LLKE+ + +S+G G+ V+LPG K P + FGTPY I + L++QN L+ RN +L +++RN KRAPERWQ E+ FDVV+CFE RVFD V+DL R+ K + VV++ ++D+ +++A AA L LC MLE+ +D + D +++ F + R L+ +C
Sbjct: 12 FAMVCASNQNRSMEAHCLLKENGFQVESFGVGQHVKLPGPTQKQPNVYDFGTPYKTIWEDLSKQNAELYTRNGLLKMVQRNMGVKRAPERWQ----ENSQVFDVVICFEERVFDTCVDDLHTREQKLLKGVLVVNLEVKDNHEEAAHAAPQALKLCTMLEESEDWEEDIDEIVTRFEQEAGRRPLYTIC 196
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig987.17868.1 vs.
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90 )
Total hits: 25
0 1 Expect = 6.00e-114 / Id = 96.07 Expect = 9.61e-98 / Id = 91.29 Expect = 5.44e-72 / Id = 52.38 Expect = 6.38e-59 / Id = 49.21 Expect = 5.20e-46 / Id = 43.07 Expect = 1.55e-44 / Id = 43.07 Expect = 2.40e-44 / Id = 42.29 Expect = 5.96e-44 / Id = 43.59 Expect = 2.60e-43 / Id = 42.08 Expect = 3.62e-43 / Id = 42.86 Sequence RNA Protein-serine/threonine Protein-serine/threonine RNA RNA RNA RNA RNA RNA RNA
Match Name E-value Identity Description
RNA 6.000e-114 96.07 polymerase II subunit A C-terminal domain phosphat... [more] Protein-serine/threonine 9.610e-98 91.29 phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more] Protein-serine/threonine 5.440e-72 52.38 phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more] RNA 6.380e-59 49.21 polymerase II subunit A C-terminal domain phosphat... [more] RNA 5.200e-46 43.07 polymerase II subunit A C-terminal domain phosphat... [more] RNA 1.550e-44 43.07 polymerase II subunit A C-terminal domain phosphat... [more] RNA 2.400e-44 42.29 polymerase II subunit A C-terminal domain phosphat... [more] RNA 5.960e-44 43.59 polymerase II subunit A C-terminal domain phosphat... [more] RNA 2.600e-43 42.08 polymerase II subunit A C-terminal domain phosphat... [more] RNA 3.620e-43 42.86 polymerase II subunit A C-terminal domain phosphat... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 310.1 Seed ortholog evalue 1.3e-81 Seed eggNOG ortholog 2880.D8LTB5 Preferred name SSU72 Model size 1417 KEGG ko ko:K15544 KEGG Pathway ko03015,map03015 Hectar predicted targeting category other localisation GOs GO:0001173,GO:0001174,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005847,GO:0005849,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006368,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008420,GO:0009058,GO:0009059,GO:0009302,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0016070,GO:0016071,GO:0016074,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0023052,GO:0030846,GO:0030847,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031554,GO:0031564,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043244,GO:0043412,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060623,GO:0065007,GO:0070013,GO:0070940,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902340,GO:1903379,GO:1903506,GO:1905213,GO:2000112,GO:2001141,GO:2001251 Exons 4 EggNOG free text desc. RNA polymerase II subunit A C-terminal domain phosphatase EggNOG OGs COG5211@1,KOG2424@2759 Ec32 ortholog description RNA polymerase II subunit A Ec32 ortholog Ec-12_005940.1 EC 3.1.3.16 Cds size 990 COG Functional cat. K Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko01000,ko03019,ko03021
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1696842629.8135588-UTR-E_fasciculatus_S2_contig987:6847..6881 1696842629.8135588-UTR-E_fasciculatus_S2_contig987:6847..6881 Ectocarpus fasciculatus EfasUO2 UTR E_fasciculatus_S2_contig987 6848..6881 + 1696842629.8818004-UTR-E_fasciculatus_S2_contig987:15528..15921 1696842629.8818004-UTR-E_fasciculatus_S2_contig987:15528..15921 Ectocarpus fasciculatus EfasUO2 UTR E_fasciculatus_S2_contig987 15529..15921 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1696842629.8293047-CDS-E_fasciculatus_S2_contig987:6881..7393 1696842629.8293047-CDS-E_fasciculatus_S2_contig987:6881..7393 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig987 6882..7393 + 1696842629.8438544-CDS-E_fasciculatus_S2_contig987:11361..11618 1696842629.8438544-CDS-E_fasciculatus_S2_contig987:11361..11618 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig987 11362..11618 + 1696842629.8542845-CDS-E_fasciculatus_S2_contig987:13973..14092 1696842629.8542845-CDS-E_fasciculatus_S2_contig987:13973..14092 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig987 13974..14092 + 1696842629.864386-CDS-E_fasciculatus_S2_contig987:15426..15528 1696842629.864386-CDS-E_fasciculatus_S2_contig987:15426..15528 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig987 15427..15528 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig987.17868.1
>prot_E_fasciculatus_S2_contig987.17868.1 ID=prot_E_fasciculatus_S2_contig987.17868.1|Name=mRNA_E_fasciculatus_S2_contig987.17868.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=330bp
MKRARDESKIVDTGNHQAVVAPARAAGSTAVVPGGGAPVSETTSSKPTLL back to top mRNA from alignment at E_fasciculatus_S2_contig987:6848..15921+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig987.17868.1 ID=mRNA_E_fasciculatus_S2_contig987.17868.1|Name=mRNA_E_fasciculatus_S2_contig987.17868.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=9074bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig987:6848..15921+ (Ectocarpus fasciculatus EfasUO2)CTCACACTGCCCTGCATTCCGCCGAACAACAACC ATGAAGAGAGCTCGCG
ACGAAAGTAAGATTGTAGACACAGGGAATCACCAGGCGGTTGTAGCCCCT
GCCCGCGCCGCGGGCTCTACCGCCGTCGTCCCCGGCGGCGGCGCGCCCGT
TTCGGAGACGACATCATCAAAACCGACCCTCCTTCCCCCTCCCCCCCCGA
TACAGCCCTTCTCTGACGACTCCGACGACGCACGCCCCGGCGATGCATCG
TCTTCGTCTTCTTCCTCCTCCTCAACCGGCGGTTCCGCTGAAGAGGGTAG
AAGGAAGAGGGCGAAGAGGGAGCCACAGCAGGAGCTGGAAGGTTGGAGAG
CTACGGCCAACGCTATACTGTCGGCGGGAGTGAAGGACGAGGACGGGGGG
GGTAGTAGTAACAACAAGGGAGAGAACACAGGCAGCTCGAGGAAGAGCTT
CGCCGTTGTGTGCTCGAGTAACGTGAACAGGAGTATCATGGCGGAGATCT
TGCTTAAGGAGCACGACATGCGGGCTCAATCGTACGGGACGGGCAG GTAC
GTTTCTTGTTTTGTTTTCGTGTTTCCTTATTTTTTTCCAGAAGATGAGTT
GGTTGTTGGCCCGCGCCAACCCCCCCCGACCCGTTGTCATGCGTAGAAAC
AACCAATGTTTATTTTCGAACAATTTTGTTGATTTTGGTGACCACTCATG
GAGATGTTTCACTCGTTTTGTACAGCAGTAGTATATGCATAGTTGGGTGT
GGTTGTTTCAAAGGCACGGCAGCCGAGAAAAAAAGTCGCTGCTCTCCTTG
CTATTATATGTACGCTCGGTTGGTACGGGAAACATCGATTTCTGCGAGCG
GGACTACTGCTGCTGTGATTCCATTTTGAAGCGATCCCGGTACGCTCCTT
CAACGATATCAGCTTGCTGACACAACGATAGAGGAAGCTCCGTTGGACAA
ACAGCAGCAGGAGGAATGGACACCCACCCACCCACACGCATCACAGCAAC
CCCCACCCTCAAACACTGCATCAACCCAGGGTAGATGTTTGCAGACAGTA
GCTCTGCTTATTTTGTATCATCCCCCGAGTATTTTGTTCTGAAAGTCATA
TGCTGTATGTAGACTGCTGTAGACCTGTCCATGTTTCCGTTGTACATTTT
CTGGGCGCTTCGGCCGGCCCGGGGTAATACCGGAAAATTTGGTTCCCTTC
CCTCTACAGCAAGTTCTTTCCTTGGTTATCTCTCCTACCTGGTTATCTTT
GCGAGAAGGACTTGGTCGACATGTTAACATATATACACGTATGCATACCG
AGCAAGATCGAATGCAGATGCCATCCAATTATATTTTTTGGCGCACAAAT
GTTGAATCGGAGCAAGTTCCGCCTCCTGCCGTAAATCGATCCAAGCAGAT
TCGATGAATCGCTCCGCGCCTTTCCTGAAATCTCAACACGTGGTAAGGCA
ACGCTGCAGTAGTGTATAGCTATGTGGGTCCACTTCACAAATTACCTGCG
TAGTGGCGTGGCTTGTTATCCCTCTTCTAGTACCCAGTCCCTCTGCAAAA
AACATATGTCAAAAACATGCTTGTCAGCCATTGGTCGGGGCTCTACAGCA
GTCCCTCCAAGAATCGGAGCTCCTTGGCAGGAAACGGGTGACTTGGCTTC
AGTATGAAAAGTGTCCCCAAAACACGTGGCGGCACTTTTTATACTGCAGC
AAAGTCAGCAAATTTTTCCAGTTCTAGGCGATGACTGCAGTTTTACGACG
TAGGGGACACGCGGCTTGGGACATGGTGACAGCAAGTCAGAGGCGGAGGA
GAGGCATCACACAGCATATCCCACAGCGTACCACCTCAGCCAAGCATGCA
TGTACCAAGGGTTCTCACGTGCGTTGCACGTGCCTAGGGTGACTACGGTG
CGGTAAATAGGCATTCGAGTGATGTGTCCCCGAAGTGTGCCCAAAAGGGC
TTCCAGTACTTGGAGGGTAAAGAGCTTTGTTTTTTGGTTTATCTGTCAAC
GAAGGATACGCTCTTCAAAACTGAGACTGATCTTTAAATCGATGCAACAT
TCGCTACAGGGTTGGCTATCGATGACTTCAGGAGAACGCTAGGTGAAGTT
AATTATTGACTTTGAAACCGTCAATGGCAGATTTTACCGATCGCTCGAGC
AATGCCTCGTATGAACTGGGAGGAGAGCCTTCAACCTCAACATTGATGTG
GCATTGACTTACGACTTTGAAGACTCGATCCTCTTGTACAGATTTTTTTC
CGCTTCTGTCTTCTGGTGCGTATGCCGGTGTGGAAGCGGCTAAGAGGTTA
AACGCAGGACAGGGCGACAAGGCACCATCTATACCGATTTTCCTGTCATG
CTGACAGGTCTGTCGTGTGGCGTCCCATTCCATGCCCGGGGGACTCTCTC
GCCCCCCCCGCCCCTCACTCTGCATTGTTCTAGCGCAGGTTTGTTTGCCT
TGTTTTATTGTTGCGCCCATTGCCCGTTCAACGAACACCAAGCATCGCGC
CTGTCTCCTCCCTGAGCACGACAATTCCAGGGCGACGGATCCTGCCCTTG
TTTTCCGTAATTACTTCAGTCGACCTTCTGAGTTTGTCAGTGCCCACTGC
TTTGTCTCTTCGTGAGCAAAGAGCGTGACCTTATGTTGGCATCTTCAAAT
GTAGACTAGAGGGACATAAATCGATTTTTTCGGTCCGAAGTGGCACAGCC
CCAAAATGTACCTGAATCTCATGGTCCCACAGAAGACGTTGGTGGCCAAT
ATTCTCGAATCTCGATGGATCGAAATGAGGCAACACCGCAGCTTTTGAAC
CGGGAATCATAACAACGCACTCCGGTCGCGCAACACCCTGCCTTTTCTGT
AAAGTCAACCGGTGTTCGGCCAGGCTCTTACGAGAGTGAAGAGCCACATT
GAAAGCTCGAGTGCTGTCCATTTTTTTGTGGTCGCTCCTCTCCTAGCTCT
ACCTTGTGGGTTCCAGCTCACTGCTCAGTTAGGTGGGGCACGGCGAAATC
ATGAGCAACCTACAGTACGACCAGGATGGAACTACCAGACGACGGAGGCT
ATGGCTTATTTGTTTTGCTTTTCCTTTTGTAGTCATCGTGTCCCGCAGAA
CTGAGCTCCACACGCCAGGCTGTTTCTCCCTTCTATTTTTTTGCTAGCGT
AGTAGCAGTTCGTCCTGGACCTTACGAGGGAAGGCAGAAGCCACATGCCC
ACAACACGACTCTTACGGTTCTGTGTGATCCGATTCAAGTGGAGATACAA
GCGGCCCCTGCTGTTGCCGCGAGTAGAATATCTTGAGAGGGTTCGGGCAC
CCTAGCGGTGGCTGCGGCATGTTGCTTAGAGACCGGCGAGGCGCTAAGAA
AAGATGGCTGGTGATGTCCACGCGAAAGCACGGCACTAACATCGTGCTGA
TAGCACCCCCCGATATGAAGTGTGCACGTTTTTGTCCGACACTTTTAACC
TGTTTTCTGGAGCCGGAAGGTTACACTGAACATCCAGTATGTTTTCCAGT
GCCGCATTAGAATGCCAAGTCCAAAAGTTAAACAGAGTGGTGCTCGCCCT
TGCCTCAATGTGTGTCGTGCTTCGTACACCAAACAGGCAATTCTCTTGGA
GATCGGCGTCGGTTTGAAGTTTCACTCCAAGCAACGTGTATCTGTTGCTG
AGAGCGCCTCGAGATTTGATGCAGAACCGCTCGCCAATGCCAATCAGAGG
ATGGAATGCGTATTTGGCAATACAATCTTGTCGTGTCGTCGATTTCGTTC
AAATGTGCAAATTCATACTCTGTATGCATACATCGACTATGTCCCGCGTG
ACAGGTTGCCTTTGATGATGTTAGTGGCGTTTTCGAATGGCATCAGCCGC
CGCTAAAGAATGTTCTGAGTGTCGTGTCATGTCGTACAAAGAACACCAGT
CTCGCCAAGGTCGTATGCTTGGATGAAGGACCGCTTTAACCACCACTTTC
CGAAGGCGAACATAACAATGGGAAAATCGTGCACGGCGCCATTTTGATAC
AGCCTTGTCCGGAGAATTCATATTCATGCCTTCGACCGCGGGCGGTCTTT
GATGAAGACAGGAGGCGGGGGCAGTGATGGTAGAGGCCGTCGTTGTTGTA
CTTCTCAGCAGACTGGTTCCGCGAAGCTTGTTTTGTCACCCCCTGTTGTG
TTTTCATCATAATATTAGTGTTGTTTTTCCCACAAGGATTTTGTCTGCCC
CTTCGCCGAACCCCTTCCTGTGTTCTGCGCTGCTTTATTTTGATTGGCAT
CAAAAGTTGTGCAACAGCAGTTCCCTGAATCCGATCGACCCGCCTCAAAA
CAACCACAACAGTTTGTGCCGATTTGGTCGGCACATGATTCCCCCGAACG
GCACGGCGTTTGCCGTTGACAGTTTTATGGCTCCTGCTCACCGCCCCGCC
GTAATTTTCTCACCATTTTTCTTCCCCCGTCTGTCCGTTGCCCCGCTGTT
TTTGCTCTCCTCTAATCGCACCATCTCTCCTTCGATTAATAATCGCGTGA
AATCTTGTTTATAGAGAGGTGAGGCTTCCTGGCAAGGACTCGAAGAGCCC
GCAATCGTTCCCGTTCGGGACTCCGTACGTCGAGATTCGCGATTTTCTCG
CTCGGCAGAACGAGGCACTGTTCCGTCGCAACAGCGTCCTCGGCCTGCTC
GAGAGAAACGCTACGACAAAGCGCGCTCCGGAGAGGTGGCAATCCCTCGA
CGGCGAACATGTCGCTTCGTTCGATGTGGTGGTTTGCTTCGAGAGCCGAG
TCTTCGATCTGGTCGTTGAAG GTACACTTACTTTTTGTAGCTGTTGTTGC
GTGGTAGATATCATTCGAGCTGCTGCTGCTGGTCCTGGTACGGCTGCAGG
TGTAGGCGTATGTTCGATCTAGGGCAGTGTAGCGGTTGTGACCGAGGCGG
AGATGCTGTCGCGGGATACACGAGGAGAAATATTTCGGTAGCACTCGGTG
TTGGTGAGCTGGTGAATGTGACGCTGGGCGTCGGGGTTGAGATGGAGTTG
TCGAGGTGGATCGGGCTGTACATGCAAGATATTTTACACAATACCGTTCT
CCAGCGCGGCCCTTGGCCGTCGCTGGTACCTCTACCTTGTAGTGCGATCA
TCGACAGCCGTTTGAACATGTGCACGAGGAGGGAAGCGGCCTGTCGGTGG
TTGGCGTTTAAATGCGTTCGTACAGAAAAGGTCCATCGCCGCTGCATAGG
TACATCATGTCTTCCCACAACACACACTCTGTTCTCGGGTGCTCCGAAAG
GCACGTCGACTGATGCAGCGCTTTTGCGCATGAAATCTGCGTACCATATT
CACACAGCATTTCGATGCTGACGCCAGCGGTCGCGTTAAACGTCGCAACG
TACACTCCTATCCTTGATTTCCATGGCATTCGGTCAGCCCCGTAGAAACA
AGCGGAGGGATTTTAGCTGTAACATGCTGCCTCCGACATAGCCTGTCCGG
TTGTGAAGATGGGATACCACGGTTACCACGGAGCGTTGTTGAGCGTGTCG
GGGGGCCTAGAGACTCAAACGTTTGAACTAAATACGCGATCCCTCAACTT
GGATGCGCTTTCCTGCTGGAGCGAGTAGCGAAAAGATGGAGCGTGAGCAA
CCGTTTTTCCAATCAGCCGAAATCGGCCTTTAAGCACGATCGCTTCGTGT
CTTGGAACACATGCCTCTGGCGAAAGGCCCATCGAACCGGAAATGGATGT
CGATGTCCGGCTGGAGCTTGCCGTTGTTTTATCTCGCGTATCGAAAGAAC
GTAAAGCACTCTACACTTGAGTCCATATCGGACTCGTGTGTAGTCCAGGG
ACATACCCCAACGACTATCCTCTATTAGTGATTGCTCACGTTATTTCCCG
TCTCCGTTGCTCGATGCGTACGGGGCGAGTTGTTGATTGAGTCGTAAGTT
TGGTGTGAGCCAAAGTGGCGCGACCTTCACAACTTACAAGTGTGACTGCT
GTCTGAGGGTGGCAGACCCTTCACGTACTCACGACTAGCCCGGATAATCA
ACGGCCAAGGACTAACCAACAGTCGACCATCTTTCCGTGTCCACGTTCTG
CACGTTTCAGGTTGTGGATAGAGGTGTCTCACCGCTACAATGATGGATAG
AATGTATCGCTCCGTGCGGTACCGGGGAAATGGGCGGGGCGGATTGCAGA
AATGTCATTTGTCGGTTCTACAGCGCTAGTCGCGCTGTTGTATGTCGAAG
GAAAGGCGTTGATTATTTTCTGGTCCGCATCGTACGTGGTCCTAATGCGC
GACCGATCGGAGCCATAGAAGAGTCATGGGTGTCACGTACACGTTGCAGT
CTGTGGGTTTCCGAGAAAGTTGGCAGGATGCCCACGGCTTCTCTTGGGAT
GTCACGTTCAAAAACCCGGCCCATGCGCTAGGTAGGGCCACCTTCTTGCC
TTGTCCTTTGATTGCTGTGGTTGGGTCTCATGCAAATCCTCAGATATTAG
CCACGAGACCCCCCACAAGGCTTGACGGCTTGGAAGCAGGGTAGATTTTA
GCGCCGGGTGGGTGATGAGAGCGACGGGAAGAAGTCGAGAATGCCAAAGA
GGGTGGGCATATCCAAAAATGACAGCTTGACATTCACTTCAGATAGCGCG
ACTGTCTGTCCGTAGATCTTCTTGTTCGATGCGCTTTTTTATCTCCTCCC
GAAACAGTTGTGGTTGACTTCCAGTTTTAGTGGTTGGAGTTCGTTGACTG
TGATGTGGTTTTGTACTCCATCGTGCTTGGTGTCAGAGCGTCTGTCAGCC
ATTGGCCCTTTTGGAACGAAGCGAACCTGCCATCACCTCCGAATCCTGTA
GCAGTCTACGTCTTGCTGGGTGGAGCCTTACGCAGCGATTACGATTGCCC
ATTTTCGCACCAGAGTACGATTTCTTGCCCATTAGTCCACGTTGGTTTCT
TCTTGACAGATTGAAATGAAAAAAGTTCATCCTTCGTTTCTTCATCGGTT
TCATGCGTCGCTGTCAGACAACGCCTTTTCCTGTTTCGCATTAGACTATT
ACCCGTTTGTTTTGGCTGACCACGAAGAAACTCATCATGCCTTTTCCTCT
CCCGCTTGCTGTCATTGTCTCAACCGGGGTTCCATTTGGTTGTCGGTGCA
CCGCTCTTGCTTCGTTCCACACACAGACCTCCAGCAGAGAGATCCAGACA
CTTTCAAGCCGCTCCATGTGGTGTCCATGACCATCCGAGACTCCGCGGAT
GACTCCGCTGCGGCAGCCGGAGACGTCCTTGATTTGTGCAAAATG GTAAA
TGAACGGGCCGAGTGGCGGTGGTGTTGGTTGCATGGTTATATTTCGCTCG
CGTCTGTCTTCAGAGAGGCCACTCGGGTTGGGGAGAGCTCCTTGATGGGA
GGCCCCAAGCTGCAGAACGAAACTGCTCAAGTGGGCGCCGTAGGGTTTTG
TACTTGAACGTGGTATGGGTAGCCCAAATGTCGTTGTCAAAGGAAGGGTT
AGAACCCGTCGAAGACAATCCAACAATGTCACGGGTTGTTACGCAGAGCG
TAGTGGGAGACGACGTTTTGATCGAGCTCTGCCGACCGTCGGATATTTAC
CAAAATGCCCGTGGCGATTTTTTCAAGAAAGTGGTAATCGCTTACGGGAG
GTCATCACCAACCTGCAAAAATGTGCGGTTGCTGGTCTCTTGAGCGCTGC
ACACCGCGCACCGGACGCTGCTCGCTTTCCGGAGTCTGCTTTGATCAGCA
CACCCGCACAACTGCTGCTGTCTGTGCTCACTAATGATTTGGGAACTTGT
TCTTCGAATGACCCGTCATATCCATGACCGTGCAGCAGAGCCCCGTCTTC
GTTGGGCACATTTATTCCCTGACCTTTACGGTAGATGATCTGTTTGTCTC
GAGTCAAAATTCAGGTACAGTAGTGCAAACCAGGTTGAACTCATCGTCAA
AGCATATTCTTCTCGGGTGATTGCGGAATCCGAGCACTCCTCCCATGCAT
ATTTCACCTCGTGTTTTGCAACCAAGCAAGTAGCGTAGGATTGCGGGTCC
ACAAACAAACCCACCCGTTTTCGTAATGGTCACAGCCTTTTACTTGTCGA
AGGTTGTCTCTGATCATCTACCGGTTTCCGAAGGACGATCGCCGGGCCGA
ACACGGAGGGCAAAATCTAGCACGTCCCATCCCTGTGGGAAAAAAACGAC
TTGAACTTGCCGAAGTTCACCACCTCTCCCGCCCTCTTACTCCCTCTATT
TCGTCCGTTGATTGACGGCCGCCCCCACCTCATGCTACCACGAACTTCCG
AGCGCCAACAACGGCGTGAACTTTATTTCCAGCCGTCCATCACCCCTACC
CCCCTTCGTTGTTCCTGTTGGTCTGACTATTTTGCTAATAATACTACCAA
ACCTCCGCCTCTGTTGCCTCTGCGCTTGTCGCCCCTCCCGGCCGTCATTG
GTTGGATGCTACCCTCCCAAACGTTTTCCTTCGCCGCGCTACGATCGTCA
TGCGTACCCTTCTTCTGGTGCCGCCGCCGGATGCAACGTCGCCATGGGAT
GTTTCCCACCCAAACCACGAATGGTTGTTGTGTTTGTGTATCATTCATTG
ACCGACTTGGGCTCCGGACCGAACCACAGCTGGAAGATTGCGATGACCTG
GACAGCGATGCTTCGAAACTCCTCAATGAGTTCAGAATTCGGAGCAAGAG
AACGGTGTTACACCAAGTGTGCCATATTTAG TGGCGGGCGGTCCGTTGTA
GGTTGCGGGGACGTTTATACCCGAGAACTGACGATCCCTTGCTGTATAAG
AAGCTTGGGTCGAGCATGTGTCCATTCATCGTGTCAGTTGAAATTGGGCT
CCACAACATCCACCCACCCATCCGTGCTTAATGCATATATGCATGCTTCG
TGCGTCCAGTCAAGCTTGGTCAACCTCGTTTCTGCAAGCTTTACAGCATG
GCAACGGCGTGCAGGTGTCATGACGTTTGAAGTATGGTTGGAATACGTAC
AAGAATTTCCCGCACACCTAGGTACGTACCCATAGTGGGGGGATTGTTTT
TTGAGGGGGTGTACGAAGTGACCACCTCCCCCCCACACGTCGATGTAAAC
CATCCCATACTAAATTCTTATATT back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig987:6848..15921+
>mRNA_E_fasciculatus_S2_contig987.17868.1 ID=mRNA_E_fasciculatus_S2_contig987.17868.1|Name=mRNA_E_fasciculatus_S2_contig987.17868.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=990bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig987:6848..15921+ (Ectocarpus fasciculatus EfasUO2) back to top