mRNA_E_fasciculatus_S2_contig9864.17865.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE) HSP 1 Score: 533 bits (1372), Expect = 8.470e-176 Identity = 253/262 (96.56%), Postives = 259/262 (98.85%), Query Frame = 1 Query: 1 FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQDMMTG 786 FKVV+DSKGGEPYDSVEYSR+FF+LFQGAIYLHQARQYLVTRLDLGAHVAHT+PVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVV TVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVG TARRRVEEEGLDLEGG+HAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHR VLSKALELVEGCPCP+GCLACIHDHGCTGYNAIIDKRAAVVILESLIQDMMTG Sbjct: 1112 FKVVDDSKGGEPYDSVEYSRSFFSLFQGAIYLHQARQYLVTRLDLGAHVAHTIPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVCTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGETARRRVEEEGLDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPEGCLACIHDHGCTGYNAIIDKRAAVVILESLIQDMMTG 1373
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: DEAD/DEAH (box helicase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG5_ECTSI) HSP 1 Score: 488 bits (1255), Expect = 1.290e-163 Identity = 229/240 (95.42%), Postives = 235/240 (97.92%), Query Frame = 1 Query: 4 KVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNA 723 +VV+DSKGGEPYDSVEYSR+FF+LFQGAIYLHQARQYLVTRLDLGAHVAHT PVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVV TVYGFVKKQMGTGR LERGECSLPPLQYATRAFWLDVG TARRRVEEEGLDLEGG+HAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFD+RPGGVGVSDAMFGCHR VLSKALELVEGCPCPDGCLACIHDHGCTGYNA Sbjct: 671 RVVDDSKGGEPYDSVEYSRSFFSLFQGAIYLHQARQYLVTRLDLGAHVAHTTPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVCTVYGFVKKQMGTGRVLERGECSLPPLQYATRAFWLDVGETARRRVEEEGLDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDRRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPDGCLACIHDHGCTGYNA 910
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AHT8_9STRA) HSP 1 Score: 234 bits (597), Expect = 2.300e-71 Identity = 123/279 (44.09%), Postives = 167/279 (59.86%), Query Frame = 1 Query: 28 GEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSED-----KHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLD------------------------------LEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGC-HRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVIL 756 G DS+ YSRAFF LF+GAIYLHQ RQ+LVT+LDL + A PV+VNY+T++RN+ +VNV K LE S +TG V+VV+ V+G+ K TG+ L+ G SLPPL+Y TRA W+DV +R+V E + + VHA+ H L+A+ PLF+LCD D+D EH + RP+P R++V+DKRPGGVG+++A++ C AVLSKA +LV C C GC CIHD C+G N + K A++IL Sbjct: 72 GVSIDSIGYSRAFFELFEGAIYLHQGRQFLVTKLDLQQNQASVRPVRVNYFTSSRNHTDVNVIKVLESSLSGWSGCSEMNTGSVSVVTRVWGWRKHWQATGKILDMGHFSLPPLEYETRAVWIDVPEALQRKVMELCVSSSPTCPKSRDDISPQKCDQDVPPKIPPSQAVRSAVHALNHVLVAIAPLFILCDKDDIDTEHVYVYQQRPRPARLIVYDKRPGGVGIAEALYCCGSHAVLSKAYDLVTSCSCAYGCPGCIHDPRCSGQNESLFKEGAILIL 350
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF1_9STRA) HSP 1 Score: 226 bits (575), Expect = 3.030e-65 Identity = 116/265 (43.77%), Postives = 161/265 (60.75%), Query Frame = 1 Query: 1 FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEV-------SEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHAR---PHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESL 765 FKV +++ + D+VEYSRAFF L+ GAIYLHQARQYLVT LDL HVA PV+V Y+T ARN +V T R+E S H G V V TVY + K+ M + + E EC LPPL+Y +RA+W D+ ++ + E G D + +HA HA++++ PL LLCD +D++ H + +RP P+RIL+FDK+ GG G + A+F + VL +A L+E C C +GC +CIH H C +N +DK V +L L Sbjct: 413 FKVQDETDNLKVIDTVEYSRAFFELYTGAIYLHQARQYLVTHLDLKTHVAKVRPVRVPYHTMARNYTDVITTNRIESLVAGGAGSNAGLVHLGAVIVKRTVYSWQKRYMNSDKCFESHECRLPPLEYRSRAWWADIPLDLKQELVEHGHDFQECIHAAAHAIVSITPLELLCDPSDIETLHGYISVTNSTRPSPRRILIFDKQAGGNGTASAIFRHTKEVLRRARALMEACACENGCPSCIHHHMCYEFNEGMDKVGGVRLLRGL 677
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSL9_9STRA) HSP 1 Score: 226 bits (576), Expect = 3.220e-64 Identity = 114/249 (45.78%), Postives = 164/249 (65.86%), Query Frame = 1 Query: 40 DSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKV-NYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPC--PDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQDM 777 D+V Y+RAF+ LF+GAIYLHQAR +LVT+LDL A A ++ Y TA+RN+ +V+ + LE TG V+VVS V+G+ K T + LE E SLPPL++ +R W+DV ++A ++ LD GVHA HALL V PLF++ DAAD+ EH P RP+P R++++D RPGG+G +DA+F A L +A L+ CPC GC AC+H H C+GYNA +D+RAA +I+++++Q++ Sbjct: 756 DTVPYARAFYELFEGAIYLHQARPHLVTKLDLQARYASVKRLRTCGYITASRNHTDVDPVRVLEARGP--LKTGVVHVVSKVWGYRKVCRQTFKVLELKEFSLPPLEFDSRGTWVDVPSSAIEKMASLNLDARSGVHAANHALLIVAPLFVVADAADISTEHVYPRQHRPRPLRLILYDARPGGLGAADALFRRFHAALGQARRLLSECPCRFSSGCPACLHVHTCSGYNANLDRRAARIIVDAVLQEL 1002
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIE2_9STRA) HSP 1 Score: 211 bits (538), Expect = 1.430e-61 Identity = 102/257 (39.69%), Postives = 151/257 (58.75%), Query Frame = 1 Query: 40 DSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKH---------------AHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESL 765 D++ YSRAFF ++ GAIY+HQ+ Y+V++LDL AH VNY+T+ R+ ++ V KR E S H AH G V VV +VYGF K + E E SLPPL++ T A W+D+ R ++EEEGLD +GG+HA H + +VP ++CD+ +D EH + RP+P R+L++D PGGVG+ +A+F +L ++ L++ C C GC+ CI D C +N ++DK AA IL+ + Sbjct: 208 DTIPYSRAFFEIYPGAIYMHQSVTYIVSKLDLVNFTAHAHQTSVNYFTSPRDITDIEVLKRFE-SYSGHLINNESLKTTPLSLSAHLGQVKVVCSVYGFRKMWFKNNKVFEMHEFSLPPLEFETVALWIDLPPDIRDKIEEEGLDWKGGMHAASHVIARLVPTMVICDSKSIDTEHINSYSQRPRPPRLLIYDTTPGGVGIVEAIFHQLEELLKRSKNLIDSCKCTVGCIRCILDLKCKDHNMVLDKAAAAKILDMI 463
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ71_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.130e-60 Identity = 107/258 (41.47%), Postives = 160/258 (62.02%), Query Frame = 1 Query: 10 VNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVK-VNYYTAARNNVEVNVTKRLEVSE-DKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPC--PDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQ 771 V+ S D + YSRAF+ L+QGAIY+HQA+ +L+T+LD+ ++A P+K YYT+A+N+ + + L++ TG V V S V+G+ K TG+ L E SLPPL++ TR WLD+ A + + LDL G+HA HA+L +VPLF++CD DV+ EH RP+P RI++FD RPGG+GV+ A+F AV+S+AL L+ CPC GC +C+ CT +N +D RAA++I ++++ Sbjct: 613 VHSSINNVKLDEIPYSRAFYELYQGAIYMHQAKPFLITKLDIKKYIAIAQPLKHCAYYTSAQNHTDADPIDILDIWPLGNICRTGLVRVHSHVWGYRKICKHTGKFLSSHEFSLPPLEFITRGIWLDLPQEAIHEISQANLDLHHGIHACTHAILNIVPLFVVCDNTDVNAEHVYISQKRPRPARIIIFDTRPGGIGVAHAIFRRIYAVISEALRLITECPCHAQSGCPSCLFSASCTAHNLALDSRAAIIIFRAILK 870
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: DUF1998 (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7X3_9ARCH) HSP 1 Score: 197 bits (501), Expect = 5.580e-58 Identity = 98/260 (37.69%), Postives = 157/260 (60.38%), Query Frame = 1 Query: 1 FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSED---KHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRA-VLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLI 768 F VV + G E D + YSRAF+ LF+ AIY+H+ +QY+V +LD+ ++A V V YYT+AR+ VNV K L++ D + G V +V TVYG+ K + + E GEC LPPL+Y T+AFW+ + T+ + ++E+ G ++ VH+ HA++A++P L CD D+ EH ++ P RIL++DK GG+G++ ++ H +L A +++ C C +GC C++DH C +N K+ A+ +L+ LI Sbjct: 17 FAVVVEGTG-EVLDGIGYSRAFYELFEQAIYMHRGKQYMVVKLDMVNYIARVKLVNVKYYTSARDRTAVNVIKVLQLDGDDGDSMFNYGIVQIVQTVYGYSKHSLYSHFVFEHGECQLPPLEYETQAFWIYIPTSIKYKLEDLGHNVTVAVHSANHAIVALLPSILACDPGDICTEHID-SNAHPSYNRILIYDKPMGGIGLAKNLYLQHGVEILWAARDMLTKCECANGCPVCVYDHRCQKHNGDCSKQGAIALLQFLI 274
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EQ68_CAFRO) HSP 1 Score: 202 bits (513), Expect = 4.110e-57 Identity = 95/254 (37.40%), Postives = 143/254 (56.30%), Query Frame = 1 Query: 7 VVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNVTKRLEVSEDKHAHTGCVNVVSTVYGFVKKQMGTGRTLERGECSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLI 768 VV+ D +EYS A + ++GAIY++Q Y + +LDLG VA YYT R+ +VNV R D H G + + V+G+ K +G+ L+ + +PP ++ T A W DV + ++ G+D GG HA HAL+A +P F+LCD +D+ + A P R +P R++V+D R GG+GV+ A F R + +AL ++E CPC GC +C HD C GYN +IDK AA++IL ++ Sbjct: 345 VVDAGDRNRLIDDIEYSSALWEAYEGAIYMNQGVTYKIVKLDLGRGVASARVTSEQYYTDTRDFTDVNVLSRTRTGADGRTHFGRIQCIRRVFGYRKIWKKSGKLLDMCDVDMPPHEFVTHAMWADVPLAVKLYLDAHGMDFIGGCHAASHALVAALPQFVLCDRSDLGMDCANPLAERARPLRVMVYDNRMGGIGVAAAAFQRARRMFRQALAILESCPCVPGCPSCCHDPACRGYNYVIDKPAAIIILRGVL 598
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Match: Uncharacterized (protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EC89_VITBC) HSP 1 Score: 199 bits (506), Expect = 1.590e-54 Identity = 103/255 (40.39%), Postives = 148/255 (58.04%), Query Frame = 1 Query: 25 GGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAHTVPVKVNYYTAARNNVEVNV--TKRLEVSEDK---HAHTGCVNVVSTVYGFVKKQMGTGRTLERGE-CSLPPLQYATRAFWLDVGTTARRRVEEEGLDLEGGVHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRAVLSKALELVEGCPCPDGCLACIHDHGCTGYNAIIDKRAAVVILESLIQ 771 G E D +EY AFF + GA+YL++ ++YLV+ LDL VA P KV YYT R++ +V+V T + + S D + G + V V+G+ K + + + LPP+ Y T FW D+ R ++++ GLD+ GG+H HALLAVVPLF+LCD D+ CE P R +P R++VFD PGGVG+S F R + AL+LV C C GC AC+ C YNA+I K AA+V+L ++++ Sbjct: 1312 GQEVIDEIEYHEAFFMVHPGAVYLNRGKEYLVSHLDLHHLVARVQPAKVPYYTRTRDHTDVDVLTTNQQDDSIDGIEVSTYRGRLQVCLKVWGYRKFWRSSSQPFDSTVGLGLPPIAYQTDGFWFDIERPLRDKLDKRGLDIRGGIHGAEHALLAVVPLFVLCDRTDISCECPNPWDERLRPLRLVVFDSTPGGVGISMRAFQQARGIARAALQLVNDCTCDQGCPACVCHPNCGEYNAVISKPAALVVLRAMVR 1566 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9864.17865.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9864.17865.1 >prot_E_fasciculatus_S2_contig9864.17865.1 ID=prot_E_fasciculatus_S2_contig9864.17865.1|Name=mRNA_E_fasciculatus_S2_contig9864.17865.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=262bp FKVVNDSKGGEPYDSVEYSRAFFTLFQGAIYLHQARQYLVTRLDLGAHVAback to top mRNA from alignment at E_fasciculatus_S2_contig9864:253..4730+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9864.17865.1 ID=mRNA_E_fasciculatus_S2_contig9864.17865.1|Name=mRNA_E_fasciculatus_S2_contig9864.17865.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4478bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9864:253..4730+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9864:253..4730+ >mRNA_E_fasciculatus_S2_contig9864.17865.1 ID=mRNA_E_fasciculatus_S2_contig9864.17865.1|Name=mRNA_E_fasciculatus_S2_contig9864.17865.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=786bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9864:253..4730+ (Ectocarpus fasciculatus EfasUO2)back to top |