mRNA_E_fasciculatus_S2_contig9862.17863.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9862.17863.1
Unique NamemRNA_E_fasciculatus_S2_contig9862.17863.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9862.17863.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L331_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-10
Identity = 58/160 (36.25%), Postives = 84/160 (52.50%), Query Frame = -3 
Query:  103 LATTGDAASPPELLSLAIKAAEGVGLTTEEVAQRQRRAVLQAVVK*LWRCTNHGGLLMAGDYLVLPTTPSAIPANSAVSTPTATXSTSAPAAGDNAGSVPGDAEGKRKLDDVISVLDDMSERSSLAEALGQAGGVTSEPATKRPLTFVSIPSKVS--LCV 576
            L   GDAA+PPE+  + + AA   G++ E+   R +RA++QA+V  LWRCT+HGGL M+     LP    A PA S      A+   + P A       P  A  KR LD++    +     S+ + +   AG    EP+ K+ L +VS+ +KVS  LCV
Sbjct:  158 LTQAGDAATPPEIFKVGL-AARAAGVSDEDNDARVKRALVQALVSYLWRCTDHGGLKMSTGGAYLP----ADPATSGPPAAAASAKEAPPIAH------PDIAGTKRLLDEISRGRNGWDAASASSPSEAGAG----EPSLKQSLIYVSVSAKVSPLLCV 302
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BLAST of mRNA_E_fasciculatus_S2_contig9862.17863.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQI1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.770e-7
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = -3 
Query:  388 LATTGDAASPPELLSLAIKAAEGVGLTTEEVAQRQRRAVLQAVVK*LWRCTNHGGLLM--AGDYL 576
            L   GDAA+PPE+  + + AA   G++ E+   R +RA++QA+V  LWRCT+HGGL M  AG YL
Sbjct:   66 LTQAGDAATPPEIFKVGL-AARAAGVSDEDNDARVKRALVQALVSYLWRCTDHGGLKMSTAGAYL 129
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9862.17863.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.570e-1036.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.770e-749.23protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9862contigE_fasciculatus_S2_contig9862:1689..2266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size578
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842629.3657744-UTR-E_fasciculatus_S2_contig9862:1688..17521696842629.3657744-UTR-E_fasciculatus_S2_contig9862:1688..1752Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9862 1689..1752 +
1696842629.398048-UTR-E_fasciculatus_S2_contig9862:2082..22661696842629.398048-UTR-E_fasciculatus_S2_contig9862:2082..2266Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9862 2083..2266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842629.38883-CDS-E_fasciculatus_S2_contig9862:1752..20821696842629.38883-CDS-E_fasciculatus_S2_contig9862:1752..2082Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9862 1753..2082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9862.17863.1prot_E_fasciculatus_S2_contig9862.17863.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9862 1753..2082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9862.17863.1

>prot_E_fasciculatus_S2_contig9862.17863.1 ID=prot_E_fasciculatus_S2_contig9862.17863.1|Name=mRNA_E_fasciculatus_S2_contig9862.17863.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=110bp
MDRPVPPVEISKDTQRLTLDGMLTKVKGRFVAGSLVTPPACPRASARLLR
SDMSSRTLMTSSSLRLPSASPGTLPALSPAAGADVEGVAVGVDTAELAGM
ADGVVGRTR*
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mRNA from alignment at E_fasciculatus_S2_contig9862:1689..2266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9862.17863.1 ID=mRNA_E_fasciculatus_S2_contig9862.17863.1|Name=mRNA_E_fasciculatus_S2_contig9862.17863.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=578bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9862:1689..2266+ (Ectocarpus fasciculatus EfasUO2)
AACTACAGGCAGCAGGAGCCGTGGACAGGAGGAGGGACATGTTGTAGACA
TATAGCCTACCGCAATGGATCGCCCGGTTCCTCCTGTGGAAATTTCAAAA
GACACGCAAAGGCTCACCTTGGATGGTATGCTGACGAAGGTTAAAGGGCG
TTTCGTTGCCGGCTCGCTAGTCACTCCGCCCGCCTGCCCCAGGGCCTCCG
CCAGGCTGCTGCGCTCAGACATGTCGTCCAGGACGCTGATGACGTCGTCT
AGCTTGCGCTTGCCTTCCGCGTCGCCGGGGACGCTCCCCGCGTTGTCTCC
GGCGGCGGGTGCAGATGTGGAGGGCGTAGCGGTGGGGGTGGACACGGCAG
AGTTAGCGGGGATGGCAGACGGCGTGGTGGGAAGAACCAGGTAGTCCCCG
GCCATCAAGAGGCCTCCGTGGTTGGTGCACCGCCACAGTTATTTCACGAC
GGCTTGCAGGACGGCGCGGCGCTGGCGCTGTGCAACCTCCTCCGTCGTAA
GGCCGACGCCTTCGGCGGCCTTGATGGCAAGGGACAGAAGCTCTGGAGGG
CTAGCAGCGTCTCCTGTGGTGGCAAGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9862:1689..2266+

>mRNA_E_fasciculatus_S2_contig9862.17863.1 ID=mRNA_E_fasciculatus_S2_contig9862.17863.1|Name=mRNA_E_fasciculatus_S2_contig9862.17863.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=330bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9862:1689..2266+ (Ectocarpus fasciculatus EfasUO2)
ATGGATCGCCCGGTTCCTCCTGTGGAAATTTCAAAAGACACGCAAAGGCT
CACCTTGGATGGTATGCTGACGAAGGTTAAAGGGCGTTTCGTTGCCGGCT
CGCTAGTCACTCCGCCCGCCTGCCCCAGGGCCTCCGCCAGGCTGCTGCGC
TCAGACATGTCGTCCAGGACGCTGATGACGTCGTCTAGCTTGCGCTTGCC
TTCCGCGTCGCCGGGGACGCTCCCCGCGTTGTCTCCGGCGGCGGGTGCAG
ATGTGGAGGGCGTAGCGGTGGGGGTGGACACGGCAGAGTTAGCGGGGATG
GCAGACGGCGTGGTGGGAAGAACCAGGTAG
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