mRNA_E_fasciculatus_S2_contig985.17857.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig985.17857.1
Unique NamemRNA_E_fasciculatus_S2_contig985.17857.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig985.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 2.840e-50
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3 
Query:  159 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGFEFGSSVTDRK 422
            MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPP TRVGG+EFGSS+TD K
Sbjct:    1 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 88
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig985.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.780e-25
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 3 
Query:  240 LRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGFEFGSSVTDRK 422
            L  APWEYVLGAG+GAY+GNKIPQWEATLISDINEMRADRNMPP TRVGG+EFGSS+TD K
Sbjct:  587 LSPAPWEYVLGAGVGAYIGNKIPQWEATLISDINEMRADRNMPPATRVGGYEFGSSITDSK 647
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig985.17857.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V622_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.220e-15
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 3 
Query:  192 FGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGFEFGS 404
            +G+  K   N +MKV LRR PWEY++   +GAYVG K+P+W+  LI +INEM  +R +PP+   G F  GS
Sbjct:   17 WGVALKAMTNSVMKVPLRREPWEYLMFGALGAYVGYKMPEWQQNLIDNINEMHEERGLPPLDVDGQFSLGS 87
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig985.17857.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF43_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.250e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3 
Query:  132 GREQRNGAK--MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPVTRVGGF 392
            GREQ+   +  MG+TAM VGG  G       N   KV L R+PW +V    +G Y G K    EA L++DINE+RAD+ +PP+    G+
Sbjct:   17 GREQQTKLRTTMGLTAMLVGGVSGTSMHLLANAARKVPLSRSPWFHVAYFFVGMYAGQKYVTVEAKLLNDINELRADKGLPPMVGTPGY 105
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig985.17857.1 vs.
Match: Uncharacterized (protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC63_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 4.500e-9
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:  159 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPV 374
            MG+     GG+ G  A+   N + KV + R PW ++    +G Y G K P+WE TL++DIN MR+++ + P+
Sbjct:    1 MGLFTTLFGGSLGFAAQAYSNSIRKVPISRQPWNHLGMFILGCYAGAKYPEWEETLVNDINAMRSEKGLSPM 72
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig985.17857.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Q8_THAOC)

HSP 1 Score: 58.5 bits (140), Expect = 3.890e-6
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 3 
Query:  159 MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIPQWEATLISDINEMRADRNMPPV 374
            MG+TA  VG   G       N + KV L R PW +V    +G YVG +  + E  L+ DINE+RAD+ MPP+
Sbjct:  136 MGLTAFFVGAFSGTGMHMMSNAIQKVPLSRRPWMHVGCFFLGGYVGQRWVRLEKELVLDINEIRADKGMPPM 207
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig985.17857.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized2.840e-5095.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.780e-2586.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical7.220e-1547.89protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical2.250e-1142.70protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Uncharacterized4.500e-937.50protein n=2 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Uncharacterized3.890e-643.06protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig985contigE_fasciculatus_S2_contig985:12766..16253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1459
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003750.1
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.655935-UTR-E_fasciculatus_S2_contig985:12765..129231696842628.655935-UTR-E_fasciculatus_S2_contig985:12765..12923Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig985 12766..12923 +
1696842628.6900485-UTR-E_fasciculatus_S2_contig985:15219..162531696842628.6900485-UTR-E_fasciculatus_S2_contig985:15219..16253Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig985 15220..16253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.666276-CDS-E_fasciculatus_S2_contig985:12923..130141696842628.666276-CDS-E_fasciculatus_S2_contig985:12923..13014Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 12924..13014 +
1696842628.6765375-CDS-E_fasciculatus_S2_contig985:15043..152191696842628.6765375-CDS-E_fasciculatus_S2_contig985:15043..15219Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 15044..15219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig985.17857.1prot_E_fasciculatus_S2_contig985.17857.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig985 12924..15219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig985.17857.1

>prot_E_fasciculatus_S2_contig985.17857.1 ID=prot_E_fasciculatus_S2_contig985.17857.1|Name=mRNA_E_fasciculatus_S2_contig985.17857.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=89bp
MGITAMTVGGAFGIVAKGTVNRLMKVSLRRAPWEYVLGAGIGAYVGNKIP
QWEATLISDINEMRADRNMPPVTRVGGFEFGSSVTDRK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig985:12766..16253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig985.17857.1 ID=mRNA_E_fasciculatus_S2_contig985.17857.1|Name=mRNA_E_fasciculatus_S2_contig985.17857.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3488bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:12766..16253+ (Ectocarpus fasciculatus EfasUO2)
AAGCAACGCTGCCTGGACTGCACTGGGAGTGGGAACAGACGTCGACACAA
GAGCAGCTACTTGGAGCAGGAGCTGCAAGAGGGAGTTGATATCTGGTGAA
AGGTTGGGGTGGATCTGCGTCGTGCGAGTGCGGCCGTGAGCAGAGAAACG
GTGCAAAAATGGGGATCACTGCCATGACGGTCGGCGGGGCGTTCGGGATA
GTGGCGAAGGGCACCGTCAACAGGCTGATGAAGGTCAGCCTGCGCAGAGG
TGAGCAAAAGCAACATAGAGCGAAAGCATGAAAGCATATAGACTATGCCT
TCCCGTACCAAACAGGATTCCCACCCTTATGCAACGCGAGCAAATAGTCT
TGCCAAGCAACACCAGGTGCTGGCACAAGCAAGCCCGACGCAAGCCCGAC
GCAGCTACTGCTGTCCTATTGTGTACCAGCGTGCTGCCGTGAAGAGTTCG
ACAGCGGCGGTGGCGTGCGGGCTTCCCGCACCATGCGACAGCAAGCTGTA
GTCGCAGCCGCTGGGGCGGCCAGAAGAACGCCTAGTCGACATGCTGCCAA
CTTCCTGAGACAAAATTCGCACAGGGATTCGGTTGGTAGTACTGCTGCAG
TGCGAGGACAGCTTCTCTGCATGCGAGTTTGATGACATGAGCTTCCTCTC
TTCGACCGCCATTTGCTCGTTACGGGCACAGCAGTCTACATAGTTCGGGA
CCCTTGACCGTCGCACTGCTGCTGTTTTCGTTGTGTTCTACGCAGACCTC
GTTTGCAGTAAGTAGAGTAATTTGTTCCTGATGCAGGGAAAATTACAATC
GTGCAGTCCCGTGGATGTGTCTTGCATTTTGGCACCATGAAGGAATGATT
ACAAATATGACTGTGACGAACCCATTCCGGCCCGACAAGGATTAATCTGG
ACTTCGCAGTCATGAGAGCAGCGATTATTACTGCTGTAAGGTTGAGGGCA
CGAGCTGCTGTGGAGAAGGGCTGCAGCCTATTGCCTATGTTTCTGTAGAT
GAATGGTTTGGCATGTCGTACGGGACGACCTACATCTATTTCCTAGTGTT
GACGTTCGCGGACGGGAGGCAGATGATGATGCTCTCCTTGTGCGATCATC
TCCAAAATCTCATGTGCACACGGCAACATGAGTTGTGCAGCGAAGAACCT
GAAACCGTCAGCGCTCTGCTTCCGCGACCTACATATATTATTCTTGCTCT
CTTGTTGTATGCGCCGACTCGTCTCCAGTACAATGACAGAAGGAATATCT
AGGCAGTTGCTTGCGAGGCGGAAACTGCTGTGCTACTTATGTACTGTACA
TGTCGAAAGTACAGCACAGATTGGGCGTGCTCTGCACCAGCACCCGCTGG
TCCTTCGCAAGCGCGCCCACGAACGCATCGCTGCTGTTTCTGTTGGTGGT
GTGGCTGGTGACGGCCGTTTTTCCGCACTGCAAAACTGCCGTTGCGTGGC
TGTCTGTCCTGCCGTCGCACACAGAACCAAAAGAGAAACATACGGCGGTG
TGAGTGAAGCATGCGTTGTTGGTGTTATGCATACGAGCGGTTGGTGTTTC
GGCTTGGCATGGAGTGAATTCTGCTCTGCTTTAACTGTGGTGAAGCGTCC
GTCTATCCAAAACCATGACATTGGTTGAAATATGCGTACGGCGTATAGGA
TGGCGGCGAAATAAGTTACCCGGGGATTCTCCAATCCCTAGATTCAGGTT
TTGGTGTAGATCGCGAGCACACCATGATAACGAGTTTTGTTTTTCAGTGT
TGGAATGTTCGCGGCACGTTCGAAGGTGTCTGGTATATTTCCCCGCGCTC
CCGAACATGATTGCGATTGAGTTGATCATTGGACTTGCTTCTTCCCGTCA
ATAACTCATTTGGCCGCCTCTCCTTTCTCGTATGGTGCGGTAGAAGTAGC
ACAACACTTTTATGGGCGCAAGTACCGCTGCACGCCTTGCGATTGATGTG
CCAACCCTCTTGGACAGCAAGCATGGCAAACAACTCGCCAGCACGTTGCA
GTGATCTCTTTTCCTCTTCTCTCTCGAGCAAGTATCACTCGGCGAAAGAA
GAGCAACTTCTTGACGAACCCAACCCTGTACTACGCGACGCTGACTCCTG
TCATCTCGCTTGCTTCGACCGTTTCGCCAGCAGGCCGGTGCTTCCTGCTG
TGAGCCCCCCCACCATCACCCACTTCCTCGCGAACAGATTATTTCGGCGA
CTAACCGGTGTACCACCTCTTTCTTTCCTACCCCCCGTCCCGCCTTTTTG
CCAAATCTCACGCGTGGCCACTTTTTAGCGCCTTGGGAGTACGTGCTGGG
CGCGGGAATCGGTGCGTACGTCGGGAACAAGATCCCACAGTGGGAAGCGA
CGCTGATCTCGGACATCAACGAGATGCGGGCAGACCGCAACATGCCCCCC
GTGACACGCGTAGGCGGGTTCGAGTTCGGATCAAGCGTCACGGACAGGAA
ATAAAGCTCTCATCATCGTTGCTGTGCTGCGTCGTGTTTTTTTTTTTGGG
GGGGGGGAGGTTGCGGTAATCCGCACCATGTTTTAGTGTGGTTCTAATGG
CGTCTTCGAAAGGGCTGGTTCGTGTGCGGGTTTAGGAAATCGCGGCTTTT
CTTGTGCTGGCAAGTGAAGCGAGCGGGCATGTCCCCCGGGGTACGGGTCG
TGAGGGAGTCGGGGCGCGCAGTTGATTGCATATTGGCGTTGTGTTGTTGT
GGGAGGTTTGTCGATTCTCCCAGAGCAGCAGCACAACGCGCCTATGGCAG
TGTTGTCTGGGTAAGATAGATTATTGTGGAAGGAAGCGAAGCAGTTATTT
AGTGCTGCGGCTGTTGTTTGCGCAACGATGGACATTTCGGCTGGACTAGG
GTCGGTTTCAAGATCTTGTTGGAGGCCTGGCATGTAACATGCATCGAGGT
GCCGCCGCCGCCGCTCTCTTAGTTGTCTCTAGGCGTGTGGGGGGCGGAGA
GGGGTTGTGGTAGGGTCTAAGCGTCTTTCTCACCATCGCTAGGGTGGGAG
ATCGAACAGCAGAGTCATGTGTGGCGTCCGAGGTGTATGAGGCGGTGGCC
TGCATGCAGGTCTGTCTCGGTGTCTCTTTTTCGAAGACTTTTCATCTTGC
TTCTACAAACCAGACTTGTTGGACACCGGAGGGTCCTTTTCCTTTCAAAA
GGGTATGAACACGCCGCTGCTATTAATAGGAGATTTGTACGCTACAAAGA
AAGTTGATCGCGTGCGCAGCGGATCCTGCTCTTGGCGAAGGGAAGCTCCG
CTAAACTGGGCCCCATCTTGCTACTGTGCTTCGCAACGCATGTTATCCTG
TGCCCCACTCGCCTCTACTGTACACCTTGCGGTGTGTATTATATAACCAG
TTGCCTGCCGATCCCTTGGGCGTCCCAAGCCCCTCTCCCCCCCTTTCCCC
TTCATTGTATTGTACGTACAATATATGTAGTGCGTTGTTCCTTCAAAACG
GTATCCGTCATTTGTGTGCATTTCGGCTCGCTTCCCTC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig985:12766..16253+

>mRNA_E_fasciculatus_S2_contig985.17857.1 ID=mRNA_E_fasciculatus_S2_contig985.17857.1|Name=mRNA_E_fasciculatus_S2_contig985.17857.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:12766..16253+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGATCACTGCCATGACGGTCGGCGGGGCGTTCGGGATAGTGGCGAA
GGGCACCGTCAACAGGCTGATGAAGGTCAGCCTGCGCAGAGCGCCTTGGG
AGTACGTGCTGGGCGCGGGAATCGGTGCGTACGTCGGGAACAAGATCCCA
CAGTGGGAAGCGACGCTGATCTCGGACATCAACGAGATGCGGGCAGACCG
CAACATGCCCCCCGTGACACGCGTAGGCGGGTTCGAGTTCGGATCAAGCG
TCACGGACAGGAAATAA
back to top