mRNA_E_fasciculatus_S2_contig985.17855.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig985.17855.1
Unique NamemRNA_E_fasciculatus_S2_contig985.17855.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3H372_9CHLR)

HSP 1 Score: 249 bits (635), Expect = 3.520e-78
Identity = 133/223 (59.64%), Postives = 159/223 (71.30%), Query Frame = 2
Query:  143 QARYRRPSSSGITPTRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLLL 811
            QAR   P        R+++GHGSGSFGHVA AK+ T  GV  A QWRGF +VS AA RLNRLVT ALL AGVPA+SLQP AS VC  GR+ ++A  PI+AAL +G++PV+HGDVAFD   GGT+ STEE+   L   L+P WLLLAGETEGV    G  +P I PE+L  +E +LGGSRGTDVTGGMA+KVRDM++LV   P  RIRIFSGL+P  + R L  
Sbjct:   36 QARQANPD------LRLVLGHGSGSFGHVAGAKYGTRQGVRTAQQWRGFAEVSAAALRLNRLVTEALLAAGVPAVSLQPCASVVCEDGRITAIAAHPIQAALTSGLLPVIHGDVAFDTVRGGTIVSTEEVMMALVETLRPSWLLLAGETEGVLDLAGQVIPRIMPETLPQVEAALGGSRGTDVTGGMAAKVRDMLALVTEQPAMRIRIFSGLTPDLLPRVLAF 252          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZCB3_9CHLR)

HSP 1 Score: 235 bits (599), Expect = 2.270e-72
Identity = 126/225 (56.00%), Postives = 161/225 (71.56%), Query Frame = 2
Query:  143 QARYRRPSSSGITPTRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLLLAA 817
            QAR   P+       R+++G GSGSFGHVAAAKH T  GV+ A  WRGF +VSDAA+RLNR+V + LL  GVPA+SL P+AS  C  GR+ ++A  P++AAL AG+VPVV+GDVAFD   GGT+ STEE+   L  E++P WLLLAGET GV+  +   +  IS  + + IE +LGGSRGTDVTGGMASKV+ M++LV++ P   IRIFSGL PG + +TLL  A
Sbjct:   63 QARRENPA------LRLVLGQGSGSFGHVAAAKHGTRHGVTDAAGWRGFAEVSDAAARLNRMVVSELLLVGVPAVSLSPSASVGCVDGRIQTIAVQPVQAALAAGLVPVVYGDVAFDSVRGGTIVSTEEVMMALVAEIRPSWLLLAGETTGVYDLEEQVISRISRANYAEIEAALGGSRGTDVTGGMASKVQSMLALVDAFPQLAIRIFSGLEPGNLAQTLLNPA 281          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=Anaerolineae bacterium SG8_19 TaxID=1703386 RepID=A0A0S8AVD4_9CHLR)

HSP 1 Score: 234 bits (596), Expect = 2.760e-72
Identity = 126/225 (56.00%), Postives = 157/225 (69.78%), Query Frame = 2
Query:  134 NELQARYRRPSSSGITPTRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLL 808
            N L +  R   SS     ++++GHGSGSFGHVAA K+ T  G+    QW+GF +VS AA+RLN  V  +LL   VPA+SLQP+ASA CR GR+V+M T  +KAA+EAG+VP+V+GDVAFD  LGGT+ STEEI +FLA +L+P WLLLAGETEGV   DG  +P I+  ++  I+  L GSRGTDVTGGMASKV  M+ LVE  P   + IFSGL  G I   LL
Sbjct:   31 NRLVSEIREALSS-KPELQLVLGHGSGSFGHVAANKYGTRQGIHTQDQWKGFAEVSSAAARLNAQVRESLLVKNVPAVSLQPSASAECRKGRIVNMGTTQVKAAIEAGLVPIVYGDVAFDSVLGGTIISTEEILSFLAADLRPTWLLLAGETEGVLSDDGRIIPLITKSNIGQIQNQLSGSRGTDVTGGMASKVNQMLELVEKDPNLSVLIFSGLKGGNISGRLL 254          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3F9Z2_9CHLR)

HSP 1 Score: 233 bits (594), Expect = 5.030e-72
Identity = 120/206 (58.25%), Postives = 154/206 (74.76%), Query Frame = 2
Query:  188 RVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTL 805
            ++++GHGSGSFGHVAAAK+ T  GVS   +W GF +VS AA+RLNR+V  AL +AGVPA++LQP+AS VC  GR+  +AT PI+ AL+AG++PVVHGDVAFD   GGT+ STEE+   +A  L+P WLLLAGET GV   +G  +P+I+ ESL  I  +LGGSRGTDVTGGMASKV  M+ L++      IRIFSGL+ G ++ TL
Sbjct:   46 KLLMGHGSGSFGHVAAAKYGTRQGVSSPSEWAGFSEVSSAAARLNRIVVDALQEAGVPALTLQPSASVVCENGRIAQIATTPIQHALDAGLLPVVHGDVAFDTVRGGTIISTEEVMMAVAETLQPSWLLLAGETAGVLDQNGTIIPKITRESLPEIASALGGSRGTDVTGGMASKVNSMLQLIDEHSQLNIRIFSGLNEGQLRTTL 251          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=Candidatus Promineofilum breve TaxID=1806508 RepID=A0A160T015_9CHLR)

HSP 1 Score: 233 bits (593), Expect = 7.120e-72
Identity = 124/207 (59.90%), Postives = 153/207 (73.91%), Query Frame = 2
Query:  188 RVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLL 808
            R+++GHGSGSFGHVA A+H T  GV G  QW GF +V+DAA+RLNR V AALL AGVPA+ L P+ASA+   G +  +A API+AAL AG+ PVV GDVAFD   GGT+ STEE+  +LA  L+P W LLAGETEGV  G+G  +P I+  +L S   +LGGSRGTDVTGGMA+KV  M++LVE+ PG  IRIFSGL PG + R L+
Sbjct:   46 RLVLGHGSGSFGHVAGARHGTRAGVVGPAQWAGFAEVADAAARLNRHVIAALLAAGVPAVGLPPSASALVSDGYIRELAVAPIQAALAAGVTPVVFGDVAFDAARGGTIISTEEVMDYLAARLRPAWFLLAGETEGVLDGEGNLIPLITASNLPSYLPALGGSRGTDVTGGMAAKVAAMVALVEANPGLAIRIFSGLIPGLLTRLLV 252          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Aspartate/glutamate/uridylate (kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ6_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 8.900e-72
Identity = 138/238 (57.98%), Postives = 143/238 (60.08%), Query Frame = 2
Query:  134 NELQARYRRPSSSGITPTRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLLLAAGRDGQEPTQG 847
            +E     R   S     TRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNR                                                                                WLLLAGETEGVFGGDGACVPEIS ESL SIEGSLGGSRGTDVTGGMASKVRDMISLVESLPG+RIRIFSGL+PGG+KRTLLLAAGR+GQEPTQG
Sbjct:   11 DETCREIREAISEWDDTTRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNR--------------------------------------------------------------------------------WLLLAGETEGVFGGDGACVPEISLESLPSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGARIRIFSGLTPGGVKRTLLLAAGREGQEPTQG 168          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0VP81_9ZZZZ)

HSP 1 Score: 228 bits (580), Expect = 1.130e-69
Identity = 122/224 (54.46%), Postives = 156/224 (69.64%), Query Frame = 2
Query:  146 ARYRRPSSSGITPTRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLLLAA 817
            A  RR + S     R+++GHGSGSFGHVAAAKH T  GV+    WRGF +V DAA+RLNRL+  ALL AG+PA+SL P+ASAVC+ GR+  +    + AAL+AG++PVV+GDVAFD   GGT+ STEE+   +   L+P WLLLAGET GV+      +P IS  + + +   LGGSRGTDVTGGMASKV+ M+SL+E  P   IRIFSGL    +++TLL  A
Sbjct:   47 AEARRKNGS----LRLLLGHGSGSFGHVAAAKHGTRQGVATPAGWRGFAEVGDAAARLNRLLMTALLAAGLPAVSLPPSASAVCKNGRIQQIGVENVAAALDAGLLPVVYGDVAFDSVRGGTIVSTEEVMMAMVGRLRPSWLLLAGETAGVYDRQQQVIPTISQTNYAEVATVLGGSRGTDVTGGMASKVQGMLSLLEQFPHLSIRIFSGLESNNVRQTLLNPA 266          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1ZMT5_9CHLR)

HSP 1 Score: 226 bits (577), Expect = 1.770e-69
Identity = 115/205 (56.10%), Postives = 150/205 (73.17%), Query Frame = 2
Query:  191 VIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTL 805
            +++GHG GSFGHVAAA++ T  GV  A QWRGF +VS A +RLN  +    L+AGVPA+ LQP+ASA+CR G+LV + T  +  AL+AG+VPVVHGDVAFD+  GGT+ STEE+  FL   ++P WLLLAGETEGV   +G  +P I P++ + I   LGGSRGTDVTGGMA+KV+ M++L   LPG ++RIFSGL  G + + L
Sbjct:   45 LLIGHGGGSFGHVAAARYQTRQGVRTAAQWRGFAEVSAAMNRLNTELINTFLQAGVPAIRLQPSASAMCRDGQLVQLDTTAVLTALQAGLVPVVHGDVAFDEVRGGTIISTEEVMDFLVARIRPFWLLLAGETEGVLDDEGRVIPHIHPDNFAQIAPLLGGSRGTDVTGGMAAKVQAMVALAGRLPGLQVRIFSGLESGVVAQVL 249          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2G6GE47_9CHLR)

HSP 1 Score: 223 bits (569), Expect = 2.750e-68
Identity = 123/230 (53.48%), Postives = 154/230 (66.96%), Query Frame = 2
Query:  119 VGRF*NELQARYRRPSSSGITPTRVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLL 808
            +GR   E+ A  R   +      R++VGHG GSFGHVAAAK  T  GV  A QW  F +V  A +RLNRLV  ALL AGVPA+SLQP+A  +C  GR+  + TAP+ AAL AG+VPV++GDVAFD E+GGT+ STEE+   LA  L+P WLLLAGE  GV  G G  VP+I+  +   I+ +LGGSRGTDVTGGM SKV+ M++LVE      IRI +GL  G ++  LL
Sbjct:   27 LGRVVKEIAAARRENPA-----LRLVVGHGGGSFGHVAAAKSHTRQGVRTAEQWHDFAEVHAAMARLNRLVVEALLAAGVPALSLQPSAGVLCENGRIKQIETAPMLAALAAGLVPVIYGDVAFDSEIGGTIVSTEEVVMALADALQPTWLLLAGEVPGVLDGQGEVVPKITAVTFDDIKPALGGSRGTDVTGGMTSKVQSMLALVEKQAALSIRILTGLESGVVQGALL 251          
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Match: Isopentenyl (phosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L9INU9_9CHLR)

HSP 1 Score: 215 bits (548), Expect = 3.840e-65
Identity = 110/210 (52.38%), Postives = 153/210 (72.86%), Query Frame = 2
Query:  188 RVIVGHGSGSFGHVAAAKHSTIDGVSGAVQWRGFCDVSDAASRLNRLVTAALLKAGVPAMSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTVASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGSLGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLLLAA 817
            R+++GHGSGSFGH  A ++ T++GV    +WRGF  V+  A+ LN+LV  ALL AGVP M +QP+ASAV R G +V MAT P++A L+ G+VP+V+GDVA D+  GGT+ STE +F +LAR +    ++L GE +GV+   G  +P I+P++L  +E +LGGS GTDVTGGMA+KVRDM++LV++ P   IRI SGL PG ++ TLL +A
Sbjct:   44 RLLIGHGSGSFGHFVAERYGTVNGVDSPDEWRGFAHVATVAAELNQLVAQALLDAGVPVMRMQPSASAVSRAGVIVRMATEPLQALLDHGVVPLVYGDVALDEVRGGTIISTETVFFYLARHIPADEIMLLGEVDGVYDQAGQVIPSITPQALPQVERALGGSAGTDVTGGMATKVRDMVALVQAEPRLTIRICSGLVPGLLQATLLGSA 253          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig985.17855.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Isopentenyl3.520e-7859.64phosphate kinase n=1 Tax=Chloroflexi bacterium Tax... [more]
Isopentenyl2.270e-7256.00phosphate kinase n=1 Tax=Anaerolineaceae bacterium... [more]
Isopentenyl2.760e-7256.00phosphate kinase n=1 Tax=Anaerolineae bacterium SG... [more]
Isopentenyl5.030e-7258.25phosphate kinase n=1 Tax=Chloroflexi bacterium Tax... [more]
Isopentenyl7.120e-7259.90phosphate kinase n=1 Tax=Candidatus Promineofilum ... [more]
Aspartate/glutamate/uridylate8.900e-7257.98kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Isopentenyl1.130e-6954.46phosphate kinase n=1 Tax=hydrothermal vent metagen... [more]
Isopentenyl1.770e-6956.10phosphate kinase n=1 Tax=Chloroflexi bacterium Tax... [more]
Isopentenyl2.750e-6853.48phosphate kinase n=2 Tax=Chloroflexi bacterium Tax... [more]
Isopentenyl3.840e-6552.38phosphate kinase n=1 Tax=Chloroflexi bacterium Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig985contigE_fasciculatus_S2_contig985:5495..8806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score114.4
Seed ortholog evalue6.6e-23
Seed eggNOG ortholog926569.ANT_15950
Model size1003
KEGG rclassRC00002,RC00008,RC00043,RC00062
KEGG koko:K00931,ko:K03430,ko:K06981
KEGG ReactionR00239,R04152,R10093
KEGG Pathwayko00330,ko00332,ko00440,ko00900,ko01100,ko01110,ko01120,ko01130,ko01230,map00330,map00332,map00440,map00900,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00015
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.PFAM aspartate glutamate uridylate kinase
EggNOG OGs2G6TH@200795,COG1608@1,COG1608@2
Ec32 ortholog descriptionaspartate/glutamate/uridylate kinase
Ec32 orthologEc-27_003730.1
EC2.6.1.37,2.7.2.11,2.7.4.26
Cds size636
COG Functional cat.S
Best tax levelChloroflexi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig985.17855.1prot_E_fasciculatus_S2_contig985.17855.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig985 5498..7516 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.5143843-UTR-E_fasciculatus_S2_contig985:5494..54971696842628.5143843-UTR-E_fasciculatus_S2_contig985:5494..5497Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig985 5495..5497 -
1696842628.6023624-UTR-E_fasciculatus_S2_contig985:7516..75561696842628.6023624-UTR-E_fasciculatus_S2_contig985:7516..7556Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig985 7517..7556 -
1696842628.6141677-UTR-E_fasciculatus_S2_contig985:7832..80101696842628.6141677-UTR-E_fasciculatus_S2_contig985:7832..8010Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig985 7833..8010 -
1696842628.6245327-UTR-E_fasciculatus_S2_contig985:8660..88061696842628.6245327-UTR-E_fasciculatus_S2_contig985:8660..8806Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig985 8661..8806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842628.5453074-CDS-E_fasciculatus_S2_contig985:5497..57851696842628.5453074-CDS-E_fasciculatus_S2_contig985:5497..5785Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 5498..5785 -
1696842628.557655-CDS-E_fasciculatus_S2_contig985:6246..63941696842628.557655-CDS-E_fasciculatus_S2_contig985:6246..6394Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 6247..6394 -
1696842628.5759518-CDS-E_fasciculatus_S2_contig985:6862..69871696842628.5759518-CDS-E_fasciculatus_S2_contig985:6862..6987Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 6863..6987 -
1696842628.5888097-CDS-E_fasciculatus_S2_contig985:7441..75161696842628.5888097-CDS-E_fasciculatus_S2_contig985:7441..7516Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig985 7442..7516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig985.17855.1

>prot_E_fasciculatus_S2_contig985.17855.1 ID=prot_E_fasciculatus_S2_contig985.17855.1|Name=mRNA_E_fasciculatus_S2_contig985.17855.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=212bp
MSLQPAASAVCRGGRLVSMATAPIKAALEAGIVPVVHGDVAFDQELGGTV
ASTEEIFAFLARELKPRWLLLAGETEGVFGGDGACVPEISPESLSSIEGS
LGGSRGTDVTGGMASKVRDMISLVESLPGSRIRIFSGLSPGGIKRTLLLA
AGRDGQEPTQGDNGSRSKGSGGPTTGGLGTVIVASATTAADVAPAVSTEV
GGEAGGGGGIS*
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mRNA from alignment at E_fasciculatus_S2_contig985:5495..8806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig985.17855.1 ID=mRNA_E_fasciculatus_S2_contig985.17855.1|Name=mRNA_E_fasciculatus_S2_contig985.17855.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3312bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:5495..8806- (Ectocarpus fasciculatus EfasUO2)
GGAGCATATTCGAATTCAAACAGCGCGGGGAGGATGGAAGAGAATGCTTC AGACCGACTGGTTTTTATAAAACTCGGTGGAAGCCTCATCTCCGACAAAA CAAAGCCCGAGACCCTGCGTGGGGAGGTTCTGAAACGAATTGCAAGGTGT GGTCATACACATGTCCTCCGATATCTGACGCGTCGTCTATAGTCTAGACT AGCGCAGTAGAGCCTGGATAGATTACGGCAGCAGCATCAGGGCGCCGCAG AAAAGGGCGTTGCATTCTCAAAAGACTTTGACCCGCTAGCGAGCCGACTG ATTCTCTCTCCGTGGAGACTGACTGTCATCAGGCAGCGGGGGGATACATT AGTCTGCTGTAGTTATCCGCCGTCTTGAGTTTTTTCGAGGGTTGTTGACA TGTGCAGATGTTGTAGACACATGTTGCCTATGGGGAACCCTTCTTGGCAA GCACCACCTTTCTACTCGCGTTACCAAGGTGCAATGCTGCAGGAAGACTC ACAATGAGCCTCGCCTTGAGCGTGTGCGCACGTGTCTCCTCAATGAAAAG TTGCACGACAGCAGTGGCTCGGGTCTCTCAAGCGTGACTCCTGTCTCCCA AGTGAAGGGTTATAGTAGAGCGAAGGGTTATAGTAGGAGAGTTGACGTGT TGGCAACCAGCTCGATGCGATGCAGAGCCCCCACCAGTTGTCATTTATCG TCTAGCATAGCGTCAGAAGCCCACCGCCAACCTCGTCGTGGCCCTTGACG AACGAACTCCACCCCACCCTTCGGATCCAACGAATGATACCTGCAGCGAG ATACAGGAGGCCATCTTCGAGTGGGATAACACCGACCAGGGTTATCGTGG GGCACGGTAGCGGGTCGTTCGGGCACGTTGCCGCCGCGAAGCACAGCACT ATCGACGGCGTATCGGGGGCCGTCCAGTGGAGGGGTTTCTGTGACGTCAG CGATGCGGCGTCCCGCCTCAACAGGTACTACGCACACAGCGTATGGCCGG ATGAGTCCTTGTTCGGACAACGATTAACTTGTTGGTGCACAAATACATAT CTCTCCTACTCGAAACTATGTAGTCAATACGCATCCCACGTGGGCCTGCC TACACGTCTTCGTGGACATTAGGTGCTCAATACCAGAGCCAGGTCTGAGA TATTCGGCGGTAGGCGCAACAGCAGCAGCAGCATTTCGAGCAAACGCGTC GTCGTCAAAAGCAACTGCCCTATCGTCACGTATTGCTTGCGCAAGCGCAG GCTCGTAACCGCGGCCTTGCTGAAGGCAGGGGTCCCGGCGATGAGCTTGC AGCCGGCGGCGTCCGCGGTTTGTCGGGGGGGCAGGCTGGTTTCAATGGCG ACGGCACCAATAAAGGTTCGGCACTTATTGAGTCTTTTTTTAGAGTTCTC GGTGGAAGCGACTCTTCTGCAAGACACGTGTTGGGCGAAAGCATCGCTCG CTCTTGGGCGATTGTGTTGTAGCTCTCACGGCAGCAGCAGTGGTAGGTTT TGCTGAACATGCATGATTGCGAACGCGTGCATATTGTGAGGTGCTTGCAC ATACGCACGCATCTTTCGTGAGGTTCTGGGTCCGTCAGCCCGCCCTCCTG CCGCAACCAACGCTTGGAACCGGGGCGTGCTTGAACTTGTTTGAAAATGA ATACTCCTTAGTAGATCGTTAAAACGCTCTTCGACCTTGTGAGGTTTAGG GTACGCTGTTCGCTTGCTTGCGTCGTCAAGTCTTGACTACGACCGGTGAT ATCATCTCTACTGAAGAAGCGATGCTTGCCTGACTCCTCCATGGCACACT TCCGGGCTGCTGGAATCAGGCTGCTTTGGAGGCGGGAATTGTGCCGGTTG TTCACGGCGACGTTGCGTTTGACCAAGAGCTCGGGGGCACCGTGGCATCG ACAGAGGAGATCTTTGCTTTCCTCGCGCGGGAACTGAAGCCACGGTAAGA AGAAAGAGAGAGCACTGAAGCTGAAGCCGCAAAGATGAAGAGAAAAAGGG GAGCCGGTAGGGGGCAAAGCAAGCAAGAGGGGGGGTTGGGGGGGAGGACG AGAGGAGCACAAAGGTCGAGCGAAAGTGAGGAGGCAAGATAGTAAGATGA GAGAGGGGGGGGAGACAGAGGGAGACAGAGAAAGGGACAGACAGACAGAC AGACAGACAGACAGAAGAGCTTGTTGAATATGTGTGGCAATGCTGCAGCT TGAACGCAGCCTCCTGAGCCGAGTATCATTCGCTGCTTCGTTCCCGTAAG ATCTCCACGCAGACTCCTTTTTGGCCCCCACAGCATAATCCCCCCCCCCA CGGAGCCAATATGAGCATGGGCTTTACCGAACACCCAGGCAGCCATGTGG CGAAACTAAACCAGCCGCCACCGCGATATCAAGTCGTGTGCGCACCCCCC ATCGTCCACCAGGTGGTTGTTGCTTGCGGGAGAAACGGAAGGCGTTTTCG GCGGGGACGGGGCTTGCGTTCCTGAGATCTCGCCGGAAAGCCTTTCATCC ATCGAGGGGTCCTTGGGGGGCTCAAGAGGAACGGACGTGACGGGCGGGAT GGCCTCCAAGGTACAGGCAGCAGTAGTGGCAGTTACGGGTCATGGATATT TCCCGCACACGCTGGGGTGCGAGCGGTGATACTTCCATCATATTTGGAGG TACCCATTCATGTGGTGGTGCGTTACAGAGTGCAGGCCCGCTCGTGTAAG AAGCACTTCATGTGAGCACAACGATTGAGCACAGACTGGCGCTCAGCAGT CATAGAGGATGGTTACTGGTGGCTGAGCCCAATTTCGTTTCGCCTTTTGT TTTACCCCTTGAGCACTATGGGCCTCCAGGTCTTGTGAGGATGCTTCTTA TCAGCGGGTCGGCGGTGTACCGTGGTTGTTTGGCGTTGTCCGACGGTATG ACGTCATGATAGAGATGCTGGACTCGCTCTAACCACCGGATTCAGGTGTG ATACCCAGCTGTTGCGTGACTAGTCTGCGTTGCGTGAGTTAATGCAAAGA CATCGCCGCCGCGTCGACCAGGTGCGGGACATGATCTCGCTCGTAGAAAG CCTGCCTGGATCAAGGATCAGAATCTTCTCCGGCCTTAGCCCGGGCGGCA TAAAGCGCACATTGCTGCTGGCGGCCGGGAGGGACGGGCAAGAACCAACG CAAGGCGATAACGGGAGTAGAAGCAAAGGCAGCGGTGGGCCGACGACAGG GGGCCTCGGGACAGTAATCGTAGCGTCTGCCACCACTGCCGCCGACGTTG CACCGGCGGTATCCACAGAAGTTGGTGGCGAAGCGGGCGGGGGTGGGGGA ATCTCGTAGAGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig985:5495..8806-

>mRNA_E_fasciculatus_S2_contig985.17855.1 ID=mRNA_E_fasciculatus_S2_contig985.17855.1|Name=mRNA_E_fasciculatus_S2_contig985.17855.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=636bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:5495..8806- (Ectocarpus fasciculatus EfasUO2)
ATGAGCTTGCAGCCGGCGGCGTCCGCGGTTTGTCGGGGGGGCAGGCTGGT
TTCAATGGCGACGGCACCAATAAAGGCTGCTTTGGAGGCGGGAATTGTGC
CGGTTGTTCACGGCGACGTTGCGTTTGACCAAGAGCTCGGGGGCACCGTG
GCATCGACAGAGGAGATCTTTGCTTTCCTCGCGCGGGAACTGAAGCCACG
GTGGTTGTTGCTTGCGGGAGAAACGGAAGGCGTTTTCGGCGGGGACGGGG
CTTGCGTTCCTGAGATCTCGCCGGAAAGCCTTTCATCCATCGAGGGGTCC
TTGGGGGGCTCAAGAGGAACGGACGTGACGGGCGGGATGGCCTCCAAGGT
GCGGGACATGATCTCGCTCGTAGAAAGCCTGCCTGGATCAAGGATCAGAA
TCTTCTCCGGCCTTAGCCCGGGCGGCATAAAGCGCACATTGCTGCTGGCG
GCCGGGAGGGACGGGCAAGAACCAACGCAAGGCGATAACGGGAGTAGAAG
CAAAGGCAGCGGTGGGCCGACGACAGGGGGCCTCGGGACAGTAATCGTAG
CGTCTGCCACCACTGCCGCCGACGTTGCACCGGCGGTATCCACAGAAGTT
GGTGGCGAAGCGGGCGGGGGTGGGGGAATCTCGTAG
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