Homology
BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK1_9PHAE)
HSP 1 Score: 385 bits (990), Expect = 1.080e-129
Identity = 219/237 (92.41%), Postives = 223/237 (94.09%), Query Frame = 1
Query: 1 SCRDGFLWRTRSYLRAWDRGIAVVVRVSSXXXXXXXXXXXXXXXXXXXLAAAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE 711
SC DGFLWRTRSYLRAWDRGIAVVV S XXXXXXXXXXXXXXXXX AAEPSGRLCEGV+LLETALGVAEG LPP QFQQFWTALAS +DLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSL RRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGG VEEAVRG GWDGWREEGGALSPEGTQMRDMLENVGVRR+GPAEASILLDKRLKGDRLAVLGYLSAAAG+
Sbjct: 242 SCLDGFLWRTRSYLRAWDRGIAVVVHASXXXXXXXXXXXXXXXXXXSF--AAEPSGRLCEGVQLLETALGVAEGCLPPGQFQQFWTALASGLDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEKSQLRSLSSGLDAHGGSVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAAGK 476
BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI)
HSP 1 Score: 379 bits (972), Expect = 7.200e-121
Identity = 224/263 (85.17%), Postives = 228/263 (86.69%), Query Frame = 1
Query: 1 SCRDGFLWRTRSYLRAWDRGIAVVVRVSSXXXXXXXXXXXXXXXXXXXLAAAEPSGRLCEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEK--------------------------SQLRSLSSGLDAHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRDMLENVGVRRLGPAEASILLDKRLKGDRLAVLGYLSAAAGE 711
SCRDGFLWRTRSYLRAWDRGIAVVVR +XXXXXXXXXXXXXXXXXXX AEPSGRLCEGVELLETALGVAEG LPP QFQQFWTALASE+DLTLVKQIVARRVEM+QDEGLQLLADLKVLMGPFDSL RRRPERHFPALAEAAVLLSLEK SQLRSLSSGLDAHGGGVEEAVRG GWDGWREEGGALSPEGTQMRDMLENVGVRR+GPAEASILLDKRLKGDRLAVLGYLSAAAGE
Sbjct: 795 SCRDGFLWRTRSYLRAWDRGIAVVVR--AXXXXXXXXXXXXXXXXXXXXXXAEPSGRLCEGVELLETALGVAEGCLPPGQFQQFWTALASELDLTLVKQIVARRVEMSQDEGLQLLADLKVLMGPFDSLARRRPERHFPALAEAAVLLSLEKDGRTHARKGMNTTKRTLHIEGSLFAQSQLRSLSSGLDAHGGGVEEAVRGGGWDGWREEGGALSPEGTQMRDMLENVGVRRMGPAEASILLDKRLKGDRLAVLGYLSAAAGE 1055
BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Match: RAD50-interacting (protein 1 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86F44)
HSP 1 Score: 56.6 bits (135), Expect = 1.220e-5
Identity = 47/167 (28.14%), Postives = 72/167 (43.11%), Query Frame = 1
Query: 175 CEGVELLETALGVAEGSLPPAQFQQFWTALASEVDLTLVKQIVARRVEMTQDEGLQLLADLKVLMGPFDSLTRRRPERHFPALAEAAVLLSLEKSQLRSLSSGLD---AHGGGVEEAVRGVGWDGWREEGGALSPEGTQMRD---MLENVGVRRLGPAEASILLDKR 657
C E+L L + +L Q W L S+++ L ++++ + LQL D+ + P S +PE HF + E LL++ K L LD G EE EEG A +GT +R +L +GV +L P+EA ++LD R
Sbjct: 674 CPMFEVLSEHLHWLKDTLSIHLLSQAWQILCSDLNKFLYQKLILVN-NFNEGGALQLQFDMTRNLFPLFSQFTEKPENHFKEIKEVCFLLTISKGSALLLREALDFPNRQGSSSEED----------EEGTAKQKDGTSLRGPARVLAEMGVHKLTPSEAKVILDLR 829
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig985.17854.1 vs.
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.08e-129 / Id = 92.41 Expect = 7.20e-121 / Id = 85.17 Expect = 1.22e-5 / Id = 28.14 Sequence Uncharacterized Uncharacterized RAD50-interacting
Match Name E-value Identity Description
Uncharacterized 1.080e-129 92.41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more] Uncharacterized 7.200e-121 85.17 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more] RAD50-interacting 1.220e-5 28.14 protein 1 n=1 Tax=Ischnura elegans TaxID=197161 Re... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 0 Seed ortholog score 379.4 Seed ortholog evalue 1.2e-102 Seed eggNOG ortholog 2880.D8LBJ7 Model size 715 KEGG ko ko:K20474 Hectar predicted targeting category other localisation Exons 5 EggNOG free text desc. regulation of signal transduction involved in mitotic G2 DNA damage checkpoint EggNOG OGs KOG2218@1,KOG2218@2759 Cds size 711 COG Functional cat. KLT Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04131
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1696842628.4078805-CDS-E_fasciculatus_S2_contig985:308..542 1696842628.4078805-CDS-E_fasciculatus_S2_contig985:308..542 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 309..542 + 1696842628.4211802-CDS-E_fasciculatus_S2_contig985:1472..1571 1696842628.4211802-CDS-E_fasciculatus_S2_contig985:1472..1571 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 1473..1571 + 1696842628.4300745-CDS-E_fasciculatus_S2_contig985:2122..2245 1696842628.4300745-CDS-E_fasciculatus_S2_contig985:2122..2245 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 2123..2245 + 1696842628.4503677-CDS-E_fasciculatus_S2_contig985:3800..3926 1696842628.4503677-CDS-E_fasciculatus_S2_contig985:3800..3926 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 3801..3926 + 1696842628.4625597-CDS-E_fasciculatus_S2_contig985:4422..4551 1696842628.4625597-CDS-E_fasciculatus_S2_contig985:4422..4551 Ectocarpus fasciculatus EfasUO2 CDS E_fasciculatus_S2_contig985 4423..4551 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig985.17854.1
>prot_E_fasciculatus_S2_contig985.17854.1 ID=prot_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp
SCRDGFLWRTRSYLRAWDRGIAVVVRVSSSAAATASSALPGGPSSSSSLA back to top mRNA from alignment at E_fasciculatus_S2_contig985:309..4553+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig985.17854.1 ID=mRNA_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4245bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:309..4553+ (Ectocarpus fasciculatus EfasUO2)TCCTGCCGCGATGGTTTCCTGTGGCGCACGAGGTCGTACCTGCGCGCGTG
GGACAGGGGTATCGCCGTCGTCGTGCGCGTCTCCTCCTCGGCGGCGGCGA
CGGCTTCTTCGGCCCTGCCCGGTGGTCCGTCGTCATCGTCGTCGTTAGCA
GCAGCCGAACCCTCGGGGCGTCTTTGCGAGGGGGTGGAGCTGCTCGAGAC
GGCCTTGGGAGTGGCTGAAGGGAGTCTCCCCCCG GTGAGTCAATCAGCGA
AACGGTCATGGCCTACATTTTGCCCATCCCGGCCTATCGCCGACTAGGCG
GCTGAGAGAGCTTTTTCTGGACGAAGTTGTAGCAGTGGTAAGTGGCTTCG
TTAGGTGAGGGGAAGGTCGGTCAGGCCACAGGGCAGTCTCATCCAACGAG
TAGCCTTTTGCGCCTGGTACAATGCGAGGTGTTGGAGGTATCGCCCGGAA
AGGCAGGACATGACGAAAAGAAAAAGTCGTCTATACCGAACGGCAGTTCT
GTTCGTTGGGCCTTGCCTGTCTGTCTTTCTGTCTATGTGGAATTGTCGTT
TTTGTAGCGATCTTCTTCGCTGCGATCACTTGGGTGAACGTGTCTCGACG
AGATTGATCTTTCCAACACCACCCTTTGCTCTTTGCCCTTTGCGGCATTG
ACAACATTGACAACATTGACAACATTGACAACATTGACAACATTGACAAC
ATTGACAACATTGACTACCTCTTGGTTGTGGAGCTATCGAGCCGTGACGC
GCGAGTCTCGGAGGGTTTGCGGTCACCGGCACAAACACGGCGGTAGCAAT
GCGTGATGCGACTTGTCTTTGCTTTGGCGGTCGAGATATCGTCGAGGCGA
CGAGTTGTAGAGCGACGCCGGACACGAGAGGTCCAAAGGCCAGGGAGTGC
AACAGACTCAATAAATGGGATTTGGTCTCTGCATGGGCGAATGAGAAAAC
TCCCATCGCCTGTCCAGCGAAGTGTCCGAAAGATGCCAAGGGCGAACGTA
CGACAACGAATACACGACTCCCGTATATGTTATGAGGGTGCCAGGGCCGT
TTGGTACATAGTAGGATAATTGATGGTATTTTTCTCTTCCTCATGTATTC
ACGTCCCCGCCTTCCTCCTCCTCCTCTTCTTGTTGCTCTTCCTCTTCTTT
TTTCACGGAAACAGGCCCAGTTCCAGCAGTTCTGGACGGCACTGGCGAGC
GAGGTGGACCTGACGCTCGTAAAGCAGATCGTCGCCCGCAGGGTGGAGAT
GACCCAGGACGAG GTAGGATATCACAGTAGCCGCAGTGTTCTCTGTACCG
CCACGGCCAAGGGAAGCGCGGGTTTGCTGTCATCTGCTTGAGTTGAAGGA
GAGGGCGTGCGCGACGGCGGCACACTCACCGCCCGTTCCTTGCTGCTCGT
GGCATGCCCGCATCGTGTATCACTCCTCGCTGGGCAGTCTTGGCGTCTGT
GTGTATCACTTTTATCACTTTGCATGCACCACCCGTCCACAGCTTCTCGG
TGAAGACGATGATGATAATGAGGGGGATGATGTTGAGGTACGCGACGGTG
GTACACACATACACATGTGCCGACGACGGCGTAGTGACTCCCTCCCGCAG
GACTGTTAATGTTGGTGGTGGTGACGCCGATCGCGCCGATGACACCTACG
AGAAGATGTGTTAATTTTTTATTTTGTCTTCACTTCAATTCAAAATCAGC
GCTCACAGCACACTTGTGCCGTTTTCTCCAACCCGTGGCCACATCACACA
GAAGGTAAGGGACGATGGTCTAACAATATACAATGGTTGATTTCGCGTCG
ACGGCGGCGTGCAGGGGCTACAGCTGTTGGCGGACCTGAAGGTGCTGATG
GGGCCCTTCGACTCCCTCACGCGGCGCCGGCCGGAGAGACACTTCCCGGC
CTTAGCCGAGGCGGCGGTGCTGCTGTCGCTGGAAAAG GTACGGATGATGG
TGGATTTGCGATTGTTTTTTCTCAACCAGGTATGGACGCCAGGATGGTCA
GCGTTTTCCACCGTATCGATCGATGCACACCCACGCAAGGGCATGGATCC
GAAAGAATAGGGACGCTAGCGAACTACAAGTAGTACAAACATTCTTGTAG
GGTCTTTCTTTACTTGGGGTGATTTCCCACTAACGCGACCAGTGGTGTGT
GTTTGGTGTGTGGGAAACGAAGGCTAATGTTAATGTTCGCACGAAGGCAT
TGCTCACACCTACCCACGACCTTACAGTAGTTTGACCGGGTTCGCTCGGG
CATGCTTGGCACTTCCTCGCCACGTACCGACGAAGACAGACTGACCCTGC
TAGCCTCCAGTGGTACTACTGTAGTAGGCTGATAGAATACCACGTTACGT
CATGCTACTTTTATTACTCTAACTCTACGCGACAGTTGAGGTTCCAACGA
TTTGACTCCACGATGGTTAGTTGAGACCTCAAAGATCAATTTCCTTCTCG
AAGGAGCGCTGGTGTTCTGAAACAGCCTGACCATCACCTTCTTAGAGCGT
GAGCGTTTTGAAACAACCGGACCATGGCCAGGATAAAGAACGCTCCCATG
AAGGGGTTCCAGACAACATCCTGCTATGTTGACAAATTTTGAAAACAAAC
GCAACAGCGCCAGAAAATGAATGCACAAGAGACACACAAGACCAGTCGGA
AGGCATCGCAAAAAAACAAATCCAAAGTTACAGGGCGGCAGTAGAGGCTG
CTCAAACCATGCCTTTCGGGCGTCTATCTCCACACGCCTCCTTTGAAACC
AAGATAAAATTCACGCCATTCTCAATTCAAGTCTAAAGAGCCAAAACGGA
AGGCGCTCAAACAAAGCCGGTGTTGCTAAAAACCTGGTCCGTTGTACTAT
TATAATTTCACTAGAGGACACCCTATAGCAGCGGGAGGGGGGTGTTGGCA
CGCTCAGATCTTCTTCTGTGGTGGTGATATCGAGGGTCGTAGTGGTGGCC
CACACTCTCCGCACATCTCCGCAAATTAGACCGTCACCCAATGTCTTGTA
CTGCTCGTGCTCGCCGCCACTGAACCCAATCTCCTGAACTGCGGGTTTAC
AGGAGTAGCTGGCGCCACTAGCTCCTGTTGACGACCCGTAGTTGAGGGGG
TTGCGGTCCGTGGTGGTGAGCACGACTGTGACAAATGTTGGGTGTCGCTT
GGTTCCGGCGCAGATTCGGACTGTTCTCAGAGGCTTCTGCGACCTTCGAT
TTTTCCGCCCCAGTAGCAACCCTGGACGTGCCAGCACGCACGACGCCTCT
TGATGGCATCCTCTACTGTTTGTCTAGCACAACGCACCAGGTTCCTCCGG
CGGGAAGGTTGTTTTCTTTCTTTGTATGGGTATAAAGTATAAGAGAAAAG
CCAGCGTGAAAATTCCTTGTCTGGGTCCCCTGAAGTCGATAGAAGACAAA
AACAAAACACGACCGAGGCCCTCACCCCACGACGAAACCTCTCCCCCTGT
TTTTGGAAACGCGTCTTTTTCTTCTTTTTCGTCATGGTCCAGTCTCAGCT
GCGGTCCCTGTCTTCGGGCCTGGATGCCCATGGTGGGGGTGTGGAGGAGG
CAGTGAGGGGGGTCGGTTGGGACGGCTGGCGCGAAGAGGGAGGCGCTCTT
TCGCCGGAAGGCACACAG GTTCGGGCGGGGGCGTGTTGTAGGGGGCGTAA
AAAAGCGCCGGCAGGCGGACAAGGAAGGGGACAGACGGGCATAATGGCAT
AACAGACAGGCAGACGCAAAGAGTCGGCACGATTTCGGCCACTGCAGTGC
CCGCCTGCGTTCCTTAGTTTCCATCCTCCTAGATCCCAGCAGTCACTCAC
GGCATGCGTTTATACCCACAGCAGCAATCGAACACTCCACCATCCCGTGG
GGGCATGCTAACGTCCACCCCGCACCCTCTACGGGACCCCATCTCTCTCT
CCGTTTGACTCCTCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCGCCACACGGGCGCCCGGGTGGTGGCGNNNNNNNNNNAAG
TTTCGGGGGGATGGGATTTCAAACTTTTGCTCTTCCGCTCCCCCCCCCCG
GGCCCCCCCCCCCCCCCCCCTTTGCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACGAGGCAGATGCGTGACATGCTCGAGAACGTGGGCGTTCGACGG
CTGGGGCCAGCGGAGGCCTCCATCCTCCTGGATAAGCGGCTCAAGGGAGA
CCGCCTTGCGGTGCTGGGGTACCTCTCCGCTGCCGCCGGCGAG back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig985:309..4553+
>mRNA_E_fasciculatus_S2_contig985.17854.1 ID=mRNA_E_fasciculatus_S2_contig985.17854.1|Name=mRNA_E_fasciculatus_S2_contig985.17854.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig985:309..4553+ (Ectocarpus fasciculatus EfasUO2) back to top