mRNA_E_fasciculatus_S2_contig984.17846.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig984.17846.1
Unique NamemRNA_E_fasciculatus_S2_contig984.17846.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig984.17846.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K4_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 7.410e-51
Identity = 126/138 (91.30%), Postives = 126/138 (91.30%), Query Frame = 2 
Query:  224 MVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDV-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPPAQRVEYRVVGRVARKTIFKTRPKPLIKKLGSGG-----STARSCM 619
            MVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDV D    XXXXXXXXXXXXXXXXXXXXXXXX  PPAQRVEYRVVGRVARKTIFKTRPKPLIKKLGSGG     STARSCM
Sbjct:    1 MVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVNDENCGXXXXXXXXXXXXXXXXXXXXXXXXXXPPAQRVEYRVVGRVARKTIFKTRPKPLIKKLGSGGGRAGGSTARSCM 138
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BLAST of mRNA_E_fasciculatus_S2_contig984.17846.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDZ8_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 1.330e-6
Identity = 42/122 (34.43%), Postives = 54/122 (44.26%), Query Frame = 2 
Query:  212 PLWSMVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPPAQRVEYRVVGRVARKTIFKTRPKPLI 577
            P WS++ELQGELIS+   S   LG +  + G   L+I NH LEGKAA   KP+ ++RK     D                                     Y VVG   +K IF TRPKP++
Sbjct:   15 PEWSIIELQGELISETKAS-LGLGHLEYKKGVPTLLIGNHLLEGKAAKLAKPMAIMRK-----DGG---------------------------------AAYTVVGIARKKLIFNTRPKPVL 97
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BLAST of mRNA_E_fasciculatus_S2_contig984.17846.1 vs.
Match: Chromosome (transmission fidelity protein 8-like isoform X2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDE7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.100e-6
Identity = 40/120 (33.33%), Postives = 52/120 (43.33%), Query Frame = 2 
Query:  218 WSMVELQGELISKDPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPPAQRVEYRVVGRVARKTIFKTRPKPLI 577
            WS+VELQGELIS+   S   LG +  + G   L+I NH LEGK     KP+ ++RK                                  S+       Y VVG   +K IF TRPKP++
Sbjct:   17 WSIVELQGELISETKAS-LDLGQLEYKKGVPTLLIGNHLLEGKITKLVKPMAIMRK--------------------------------EGSKDDGPGTAYTVVGIARKKLIFNTRPKPVL 103
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BLAST of mRNA_E_fasciculatus_S2_contig984.17846.1 vs.
Match: Serine (threonine-kinase CTR1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VDS3_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 3.860e-5
Identity = 43/135 (31.85%), Postives = 61/135 (45.19%), Query Frame = 2 
Query:  197 QGVCVPLWSMVELQGELISKDPLSGQP---LGSMT-SENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPPAQRVEYRVVGRVARKTIFKTRPKPLIKKLG 589
            +G   P W+M+E+QGEL  KD  + +    +G+++ S +G  +L I  H+LEGK     KP  VL +                                  S   A  VEY+V+G V  K +FK RP+PLI K G
Sbjct:  440 EGDAPPSWAMLEMQGELERKDGGTLEEAFDVGTLSLSSSGVVLLTIGYHQLEGKRMELKKPFAVLDRAASS---------------------------GGGSGEEAAAVEYKVIGVVREKILFKARPRPLISKPG 547
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig984.17846.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized7.410e-5191.30protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.330e-634.43protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A06... [more]
Chromosome2.100e-633.33transmission fidelity protein 8-like isoform X2 n=... [more]
Serine3.860e-531.85threonine-kinase CTR1-like n=1 Tax=Micractinium co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig984contigE_fasciculatus_S2_contig984:9969..12253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1212
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionChromosome transmission fidelity protein 8
Ec32 orthologEc-11_002560.1
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.581048-UTR-E_fasciculatus_S2_contig984:9968..100741696842627.581048-UTR-E_fasciculatus_S2_contig984:9968..10074Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig984 9969..10074 +
1696842627.6105132-UTR-E_fasciculatus_S2_contig984:11663..122531696842627.6105132-UTR-E_fasciculatus_S2_contig984:11663..12253Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig984 11664..12253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.591748-CDS-E_fasciculatus_S2_contig984:10074..102691696842627.591748-CDS-E_fasciculatus_S2_contig984:10074..10269Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 10075..10269 +
1696842627.6009262-CDS-E_fasciculatus_S2_contig984:11342..116631696842627.6009262-CDS-E_fasciculatus_S2_contig984:11342..11663Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 11343..11663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig984.17846.1prot_E_fasciculatus_S2_contig984.17846.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig984 10075..11663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig984.17846.1

>prot_E_fasciculatus_S2_contig984.17846.1 ID=prot_E_fasciculatus_S2_contig984.17846.1|Name=mRNA_E_fasciculatus_S2_contig984.17846.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=172bp
MIIPVSIDKAAQAAAAQETGDGSSKEGNQHQGVCVPLWSMVELQGELISK
DPLSGQPLGSMTSENGKAMLVISNHKLEGKAASEPKPLLVLRKVVVDVDD
ENSGGGGDSGATREGGGDREGKGGGGASRPPAQRVEYRVVGRVARKTIFK
TRPKPLIKKLGSGGSTARSCM*
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mRNA from alignment at E_fasciculatus_S2_contig984:9969..12253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig984.17846.1 ID=mRNA_E_fasciculatus_S2_contig984.17846.1|Name=mRNA_E_fasciculatus_S2_contig984.17846.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig984:9969..12253+ (Ectocarpus fasciculatus EfasUO2)
GGCAGAGCCAGCGACGCAGCAGGCGGTGCGGAGGAGCAAGCTGCAAGACA
GAAAGGGCCCTGTCCTGAATAAGTACATCTCGCTTTTGACGAGAGAGGAC
GGGAAAATGATCATACCCGTGAGTATCGACAAGGCGGCGCAGGCAGCTGC
TGCGCAGGAAACAGGAGACGGCAGCAGCAAGGAAGGTAACCAGCACCAGG
GGGTGTGCGTGCCTCTGTGGTCGATGGTCGAGCTGCAGGGCGAGCTGATC
AGCAAGGACCCCCTCTCCGGGCAGCCGTTGGGGAGTATGACCTCCGAGAA
CGTGAGTGCCCGTTTTTCAGTGTAGCGGGTTCCGATGCATCTGGTCTACA
TAACGATGTGATGGACCAGTCGGGGAGGTGCCCTCCCTCATTCACAGGTG
GATTTAAATTTTCAAATATTGACTCAATTTGAGTAGACTAGACTATACAT
GTAATTCGACTATGCGGACGTGTACGACAAGCATGCAGTCACACCAGCAT
CGGCTTCTATGCATACCTGGGGGCGCCCAGAGGTAGGCACACCAAGGCAC
ACAGGTTCATGACCAGACACACGCAGAACGTGGTCACAGGTGTGTGTGTG
GCATTACAGTCTTGCTCGGGTGGGGAGAACTTGGGAGCATCGGTGGCATG
CAGGTGGTACCGTTGAAACCTCAGTTCGGAGGGCTCCGCTTTCACCGCCA
TCGCTGTGACCGTCATATAGTCTAGAGACCGAATTGTTGGTGTGTGTTAC
TTGTTGTTGTTGTTGTTGTTCATGTTACAGCAGTTGCTGTTTTCTTCACA
CGAAAAGCTGCTGTTGTTGTTGTTGTCATTGTTGTTGTTGTTCATCTTTC
AGCAGTTGTTGTTTTCTTCACACGAGAAGCGGTTTGTTGTTGTTGTCATT
GTGGTTCCGGACTCTGCTCTGTACGTCGTAACATCCGTGCCGGTCCCAAC
CGACGCCGACGCCTTTCGGCACGCACCATTCGTTTCAAGGGTTCACACTA
TTTTTTCTAATTGTATCTCGCCTAAGCCCTCAGTGGTCTTCTAGGTATTC
TCGTGGTTTTCCTCGTAAACCTATGATACATTCATGTGTAAATTGTATAC
GTAGGTGCACGGTTGGAGTGCGATTATCCCTGAGGCGAAAAAGAAACTTG
GATTTTGCGGTGGGAAACAATTTACACTGCAAAATCGTGACTCTATTTCG
ACTCTCACGATCGACGAGGGACACGGACGATTGCACTCTCCCTGGGCGAC
TAGCGGAAACCCGTGACCTGTCCCGACACTGCTCTAAATATGCGAGGTTA
TGCGGCAGCACACTAATCCCGGTCCCTCTCCCCCCCCGCAATAACAAACA
AACAAAACGCTTCGATATTTCTAGGGAAAAGCCATGCTGGTGATCAGCAA
CCACAAGCTAGAGGGGAAGGCCGCCTCAGAGCCCAAGCCCCTGCTCGTGC
TGAGGAAGGTCGTGGTCGACGTAGACGACGAAAACAGCGGCGGTGGCGGC
GACAGTGGCGCAACACGGGAGGGCGGGGGCGACCGCGAGGGGAAAGGAGG
GGGCGGGGCAAGTCGGCCACCGGCGCAAAGGGTGGAGTACCGAGTGGTCG
GGAGGGTTGCGCGGAAGACGATATTCAAGACGAGACCGAAGCCGCTCATC
AAGAAGCTCGGCAGCGGCGGTTCCACGGCGCGGAGTTGTATGTAAATACT
TGTAGTCCGCCTGTTTTTATTTCGTGAGAATACAGCTTTGTGTTTTTATT
CACGACGGTTTTGCTTCGAATGGTGCTTCCCCGCTTGTATCTCAACGAAT
CGTGTCGAGTGTTTTTGTTTTTGCTTGTTGTCGTTTAGATGGATTGGTTG
GTTGATCAGTGATGAGGTCCAGTTGTTTGATGGCGGGTGTCGATGGAAAT
GTTGGATCTCGTTTAACTTCTTGGGGTTTGGATTATTTGCACAATACATT
TAGGGCTGCTGCCGTTACTAGGGAAGCTGAAGCTGCGAGGATTGCCTGCC
ATGTTTTATTTCCATCTGCTCAGAATTTTGTAGCCGGTTTGGCGGGGAAA
GGGCACCCAAAGAAAAACGCACGAGCAGCTGTTGCTGTGGCGACGGCTGA
AGTGTGCCTAGAAGGTATTGTCATTCGATGGGGAGTTGGGAGGATGTTTG
GATATGCTCCATACCCCCGGCTGTAATGCCAAAAAACTAATCGCGTTCAT
TGACCCCTTGAAACTGTTAAAATCCGCCAAGCTCTTGGAAAATTGGCGAT
AATATCTAAGCGTTTGGTGGCTGCATGGAAGATGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig984:9969..12253+

>mRNA_E_fasciculatus_S2_contig984.17846.1 ID=mRNA_E_fasciculatus_S2_contig984.17846.1|Name=mRNA_E_fasciculatus_S2_contig984.17846.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=516bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig984:9969..12253+ (Ectocarpus fasciculatus EfasUO2)
ATGATCATACCCGTGAGTATCGACAAGGCGGCGCAGGCAGCTGCTGCGCA
GGAAACAGGAGACGGCAGCAGCAAGGAAGGTAACCAGCACCAGGGGGTGT
GCGTGCCTCTGTGGTCGATGGTCGAGCTGCAGGGCGAGCTGATCAGCAAG
GACCCCCTCTCCGGGCAGCCGTTGGGGAGTATGACCTCCGAGAACGGAAA
AGCCATGCTGGTGATCAGCAACCACAAGCTAGAGGGGAAGGCCGCCTCAG
AGCCCAAGCCCCTGCTCGTGCTGAGGAAGGTCGTGGTCGACGTAGACGAC
GAAAACAGCGGCGGTGGCGGCGACAGTGGCGCAACACGGGAGGGCGGGGG
CGACCGCGAGGGGAAAGGAGGGGGCGGGGCAAGTCGGCCACCGGCGCAAA
GGGTGGAGTACCGAGTGGTCGGGAGGGTTGCGCGGAAGACGATATTCAAG
ACGAGACCGAAGCCGCTCATCAAGAAGCTCGGCAGCGGCGGTTCCACGGC
GCGGAGTTGTATGTAA
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