mRNA_E_fasciculatus_S2_contig9836.17844.1 (mRNA) Ectocarpus fasciculatus EfasUO2
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9836.17844.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY7_ECTSI) HSP 1 Score: 279 bits (713), Expect = 9.450e-91 Identity = 158/180 (87.78%), Postives = 160/180 (88.89%), Query Frame = 1 Query: 220 GEDDQERGFVEKRVDELEQQEAAALAAALAAASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGK-QQCRSLEDAFQAAEGESARGGDAERSAEPPEVGLIIPAWAPPSPVFEAEVEAEAGATAATXXXXPPPVSTDDDLPDIPITVADTPMGSVG 756
GE DQERGFVEKRVDELEQQEAAAL ASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGK QQCRSLEDAFQAAEGESARGGDAERSAEPPEVGL+IPAWAPPSPVFE E E EAGATAA P P+STD DLPDIPITVADTP SVG
Sbjct: 103 GEGDQERGFVEKRVDELEQQEAAALXXXXXXASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGKLQQCRSLEDAFQAAEGESARGGDAERSAEPPEVGLVIPAWAPPSPVFEREEEVEAGATAAXSAAAPHPLSTDGDLPDIPITVADTPTESVG 282
BLAST of mRNA_E_fasciculatus_S2_contig9836.17844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E6_9PHAE) HSP 1 Score: 238 bits (606), Expect = 4.420e-68 Identity = 152/196 (77.55%), Postives = 158/196 (80.61%), Query Frame = 1 Query: 229 DQERG-----------FVEKRVDELEQQEAAALAAALAAASTLPSFSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERDSEWHTAGAAAGKQQCRSLEDAFQAAEGESARGGDAERSAE----PPEVGLIIPAWAPPSPVFEAEVEAEAGATAATXXXXPP----PVSTDDDLPDIPITVADTPMGSVGS 759
DQERG FVEK VDELEQQEAAALAAALAAASTLPS+SLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASER SEWHTAGAAAGK CRSLEDAF AAEGESARGGDA+RSAE PPE+GLIIPAWAPP PVFE E EAEAG XXXX P+S+D DLPDIPITVADT S+GS
Sbjct: 420 DQERGCAEGWAGGLKKFVEKGVDELEQQEAAALAAALAAASTLPSYSLPPRRYTAGVISPRLGSPTYLASKGFGSFSGMSASERGSEWHTAGAAAGK--CRSLEDAFHAAEGESARGGDAQRSAERSTEPPEMGLIIPAWAPPGPVFEREGEAEAGXXXXXXXXXXXXXXTPLSSDGDLPDIPITVADTSTESLGS 613 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9836.17844.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9836.17844.1 >prot_E_fasciculatus_S2_contig9836.17844.1 ID=prot_E_fasciculatus_S2_contig9836.17844.1|Name=mRNA_E_fasciculatus_S2_contig9836.17844.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=260bp GEEDASLSGSSKGEKEDDRTTSVEMETEKTGGRLERKGEDEGEMERQRQLback to top mRNA from alignment at E_fasciculatus_S2_contig9836:3362..5297- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9836.17844.1 ID=mRNA_E_fasciculatus_S2_contig9836.17844.1|Name=mRNA_E_fasciculatus_S2_contig9836.17844.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1936bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9836:3362..5297- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9836:3362..5297- >mRNA_E_fasciculatus_S2_contig9836.17844.1 ID=mRNA_E_fasciculatus_S2_contig9836.17844.1|Name=mRNA_E_fasciculatus_S2_contig9836.17844.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=780bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9836:3362..5297- (Ectocarpus fasciculatus EfasUO2)back to top |